Wall clock time and date at job start Tue Mar 31 2020 08:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46726 * 2 1 4 4 C 1.53005 * 109.47009 * 240.00411 * 2 1 3 5 5 C 1.50700 * 109.46992 * 65.00227 * 4 2 1 6 6 H 1.07993 * 120.00436 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99407 * 179.97438 * 5 4 2 8 8 N 1.31518 * 119.99568 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 120.00150 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47024 * 90.00463 * 9 7 5 11 11 H 1.48507 * 109.46812 * 210.00099 * 9 7 5 12 12 H 1.48495 * 109.47223 * 330.00252 * 9 7 5 13 13 C 1.52993 * 109.46872 * 120.00239 * 2 1 3 14 14 N 1.46498 * 109.47456 * 294.99988 * 13 2 1 15 15 C 1.39047 * 120.00045 * 180.02562 * 14 13 2 16 16 C 1.39223 * 119.92993 * 180.02562 * 15 14 13 17 17 C 1.37609 * 120.06901 * 180.02562 * 16 15 14 18 18 C 1.39797 * 119.93086 * 359.97146 * 17 16 15 19 19 C 1.47518 * 120.06900 * 179.97438 * 18 17 16 20 20 O 1.21602 * 119.99735 * 24.50592 * 19 18 17 21 21 N 1.34764 * 120.00207 * 204.22666 * 19 18 17 22 22 C 1.46508 * 120.00215 * 178.07426 * 21 19 18 23 23 C 1.46500 * 120.00100 * 358.07187 * 21 19 18 24 24 C 1.39797 * 119.86123 * 0.25541 * 18 17 16 25 25 C 1.37609 * 119.93121 * 359.51553 * 24 18 17 26 26 H 1.09001 * 109.47459 * 299.99967 * 1 2 3 27 27 H 1.09002 * 109.47327 * 59.99898 * 1 2 3 28 28 H 1.08996 * 109.47355 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46698 * 185.00264 * 4 2 1 30 30 H 1.09001 * 109.46848 * 304.99608 * 4 2 1 31 31 H 0.96996 * 119.99598 * 180.02562 * 8 7 5 32 32 H 1.08999 * 109.47460 * 174.99788 * 13 2 1 33 33 H 1.08998 * 109.47175 * 55.00427 * 13 2 1 34 34 H 0.97002 * 119.99828 * 0.02562 * 14 13 2 35 35 H 1.08003 * 119.96228 * 359.97081 * 16 15 14 36 36 H 1.08006 * 120.03150 * 179.97438 * 17 16 15 37 37 H 1.08996 * 109.47278 * 90.00136 * 22 21 19 38 38 H 1.09002 * 109.46890 * 210.00162 * 22 21 19 39 39 H 1.09000 * 109.46787 * 329.99915 * 22 21 19 40 40 H 1.09005 * 109.46998 * 27.49538 * 23 21 19 41 41 H 1.09003 * 109.47496 * 147.49281 * 23 21 19 42 42 H 1.08996 * 109.47428 * 267.49001 * 23 21 19 43 43 H 1.08000 * 120.03235 * 179.74800 * 24 18 17 44 44 H 1.07998 * 119.96567 * 180.21221 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6413 0.0573 -2.4766 6 1 1.0800 0.9743 -2.3757 7 6 1.9933 -0.4015 -3.7283 8 7 1.6450 0.2776 -4.7994 9 14 2.9648 -1.9874 -3.9028 10 1 2.0265 -3.1324 -4.0197 11 1 3.8135 -1.9166 -5.1194 12 1 3.8268 -2.1738 -2.7081 13 6 2.0399 -0.7213 1.2492 14 7 1.6524 0.0352 2.4424 15 6 2.0072 -0.4275 3.7046 16 6 1.6377 0.2923 4.8376 17 6 1.9879 -0.1628 6.0882 18 6 2.7149 -1.3495 6.2203 19 6 3.0924 -1.8398 7.5594 20 8 2.4409 -1.5124 8.5327 21 7 4.1557 -2.6551 7.7035 22 6 4.5560 -3.1081 9.0381 23 6 4.9114 -3.0884 6.5257 24 6 3.0885 -2.0675 5.0805 25 6 2.7313 -1.6097 3.8329 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 3.1263 -0.7994 -1.2056 30 1 1.6054 -1.7198 -1.2952 31 1 1.8922 -0.0453 -5.6800 32 1 3.1262 -0.7996 1.2056 33 1 1.6053 -1.7198 1.2950 34 1 1.1482 0.8590 2.3518 35 1 1.0764 1.2093 4.7348 36 1 1.7012 0.3964 6.9667 37 1 4.0406 -4.0387 9.2756 38 1 5.6331 -3.2741 9.0575 39 1 4.2921 -2.3485 9.7739 40 1 4.8236 -2.3370 5.7409 41 1 5.9607 -3.2136 6.7930 42 1 4.5124 -4.0371 6.1667 43 1 3.6537 -2.9825 5.1792 44 1 3.0167 -2.1657 2.9522 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589820836.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:00:48 Heat of formation + Delta-G solvation = -13.530857 kcal Electronic energy + Delta-G solvation = -22297.971713 eV Core-core repulsion = 19021.947673 eV Total energy + Delta-G solvation = -3276.024041 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.42239 -39.86919 -37.99262 -36.73180 -35.53394 -34.06177 -32.17725 -30.90403 -29.40001 -28.68451 -27.58939 -26.72679 -24.58488 -23.63785 -22.66683 -20.95596 -20.66925 -18.98344 -18.34773 -18.17367 -17.24561 -16.83662 -16.55774 -16.12669 -15.99094 -15.53125 -15.15879 -14.82675 -14.74607 -14.58487 -14.43666 -14.15692 -13.98315 -13.60447 -13.54876 -13.42494 -13.24474 -13.09577 -12.83166 -12.66768 -12.46866 -12.20047 -11.73955 -11.66103 -11.54506 -11.34625 -11.10249 -11.02814 -10.79047 -10.72415 -9.91287 -9.68364 -8.36069 -8.24600 -6.27583 0.16514 0.52154 1.39540 1.41117 1.52195 1.87603 2.10531 2.39706 2.48302 2.96670 3.11325 3.66759 3.87909 4.00837 4.03898 4.16273 4.26686 4.32657 4.43243 4.46958 4.50843 4.58846 4.66824 4.72605 4.75634 4.83881 4.89954 4.90987 4.92453 5.05236 5.08023 5.22845 5.30740 5.37636 5.37978 5.44890 5.50162 5.57595 5.65932 5.71052 5.84162 6.30468 6.34125 6.38748 6.77525 6.80835 7.15745 7.36274 8.91950 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028482 B = 0.002722 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.832374 B =10284.384134 C =11125.027925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.081 4.081 3 H 0.059 0.941 4 C -0.006 4.006 5 C -0.519 4.519 6 H 0.034 0.966 7 C -0.001 4.001 8 N -0.955 5.955 9 Si 0.948 3.052 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.239 1.239 13 C 0.133 3.867 14 N -0.728 5.728 15 C 0.243 3.757 16 C -0.215 4.215 17 C -0.021 4.021 18 C -0.227 4.227 19 C 0.557 3.443 20 O -0.595 6.595 21 N -0.618 5.618 22 C 0.082 3.918 23 C 0.048 3.952 24 C -0.050 4.050 25 C -0.219 4.219 26 H 0.061 0.939 27 H 0.035 0.965 28 H 0.051 0.949 29 H 0.024 0.976 30 H 0.022 0.978 31 H 0.264 0.736 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.405 0.595 35 H 0.137 0.863 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.056 0.944 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.081 0.919 43 H 0.177 0.823 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.757 -8.446 23.673 26.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.100 4.100 3 H 0.078 0.922 4 C -0.043 4.043 5 C -0.557 4.557 6 H 0.053 0.947 7 C -0.197 4.197 8 N -0.597 5.597 9 Si 0.772 3.228 10 H -0.195 1.195 11 H -0.217 1.217 12 H -0.162 1.162 13 C 0.009 3.991 14 N -0.354 5.354 15 C 0.135 3.865 16 C -0.238 4.238 17 C -0.041 4.041 18 C -0.233 4.233 19 C 0.349 3.651 20 O -0.478 6.478 21 N -0.350 5.350 22 C -0.060 4.060 23 C -0.093 4.093 24 C -0.068 4.068 25 C -0.242 4.242 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.241 0.759 35 H 0.155 0.845 36 H 0.141 0.859 37 H 0.078 0.922 38 H 0.119 0.881 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.194 0.806 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.529 -8.417 23.816 26.358 hybrid contribution -0.192 0.223 -0.788 0.842 sum 7.337 -8.193 23.027 25.519 Atomic orbital electron populations 1.21673 0.95103 1.01409 1.00556 1.21075 0.96256 0.99328 0.93359 0.92250 1.19527 0.96468 0.95827 0.92518 1.21441 1.34330 1.08721 0.91237 0.94736 1.26037 0.97082 1.01047 0.95574 1.70080 1.49101 1.41719 0.98754 0.85689 0.79340 0.79349 0.78456 1.19451 1.21693 1.16233 1.21467 0.99570 0.95187 0.82884 1.44860 1.60069 1.27953 1.02490 1.18292 0.90588 0.92330 0.85338 1.20646 1.09003 1.03372 0.90740 1.20927 0.92355 0.93758 0.97075 1.19519 1.10478 1.00828 0.92443 1.18602 0.79981 0.77757 0.88759 1.90715 1.54054 1.60757 1.42250 1.47745 1.29533 1.48081 1.09654 1.21783 1.01824 0.99718 0.82682 1.22895 0.97333 1.01181 0.87935 1.22261 0.94419 0.99915 0.90236 1.20884 1.06370 0.98121 0.98818 0.91963 0.94566 0.93027 0.95775 0.95924 0.92768 0.91477 0.91324 0.75856 0.84492 0.85920 0.92224 0.88080 0.92509 0.88547 0.88796 0.90051 0.80642 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 8.88 71.98 0.64 -3.58 16 2 C -0.08 -2.69 2.37 -10.79 -0.03 -2.72 16 3 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 4 C -0.01 -0.23 3.52 29.85 0.10 -0.13 16 5 C -0.52 -28.15 8.96 25.60 0.23 -27.92 16 6 H 0.03 2.08 7.30 -2.91 -0.02 2.06 16 7 C 0.00 -0.08 5.47 84.66 0.46 0.39 16 8 N -0.96 -58.79 13.96 21.45 0.30 -58.49 16 9 Si 0.95 42.24 27.47 68.60 1.88 44.12 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 11 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 12 H -0.24 -9.55 6.54 99.48 0.65 -8.90 16 13 C 0.13 3.35 4.29 86.38 0.37 3.72 16 14 N -0.73 -16.31 5.44 -339.44 -1.84 -18.15 16 15 C 0.24 5.38 6.65 38.47 0.26 5.64 16 16 C -0.21 -4.69 9.87 22.36 0.22 -4.47 16 17 C -0.02 -0.51 9.58 22.50 0.22 -0.29 16 18 C -0.23 -5.24 5.62 -20.08 -0.11 -5.35 16 19 C 0.56 14.01 7.51 86.69 0.65 14.66 16 20 O -0.59 -19.60 16.19 -4.04 -0.07 -19.66 16 21 N -0.62 -10.71 3.27 -875.71 -2.87 -13.57 16 22 C 0.08 1.12 10.46 127.77 1.34 2.45 16 23 C 0.05 0.44 8.75 127.77 1.12 1.56 16 24 C -0.05 -0.90 7.54 22.50 0.17 -0.74 16 25 C -0.22 -4.37 9.28 22.36 0.21 -4.16 16 26 H 0.06 1.63 7.18 -2.39 -0.02 1.62 16 27 H 0.04 1.40 6.95 -2.39 -0.02 1.38 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 30 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 31 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 32 H 0.07 1.63 7.93 -2.39 -0.02 1.61 16 33 H 0.07 1.65 7.93 -2.39 -0.02 1.63 16 34 H 0.41 8.48 7.66 -92.71 -0.71 7.77 16 35 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.12 2.95 7.84 -2.91 -0.02 2.93 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.10 0.71 7.92 -2.39 -0.02 0.69 16 39 H 0.06 1.01 7.45 -2.39 -0.02 0.99 16 40 H 0.10 1.00 4.65 -2.38 -0.01 0.99 16 41 H 0.09 0.44 7.93 -2.39 -0.02 0.42 16 42 H 0.08 0.49 7.35 -2.39 -0.02 0.48 16 43 H 0.18 2.07 4.03 -2.91 -0.01 2.06 16 44 H 0.14 2.45 6.70 -2.91 -0.02 2.44 16 Total: -1.00 -71.98 350.19 3.49 -68.49 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.24 Total: 18.20 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.84 Total: -20.93 kcal Atomic # 7 Polarization: -85.80 SS G_CDS: -4.41 Total: -90.22 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.07 Total: -19.66 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.88 Total: 44.12 kcal Total: -71.98 3.49 -68.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820836.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.960 kcal (2) G-P(sol) polarization free energy of solvation -71.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds