Wall clock time and date at job start Tue Mar 31 2020 07:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46975 * 2 1 4 4 C 1.52995 * 109.47120 * 239.99917 * 2 1 3 5 5 C 1.53001 * 109.47169 * 174.99921 * 4 2 1 6 6 C 1.53002 * 109.46932 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46932 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47062 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46976 * 120.00251 * 2 1 3 10 10 C 1.34779 * 119.99957 * 275.27358 * 9 2 1 11 11 O 1.21554 * 119.99609 * 359.72401 * 10 9 2 12 12 C 1.47883 * 120.00368 * 179.72800 * 10 9 2 13 13 C 1.39924 * 120.02065 * 359.72607 * 12 10 9 14 14 C 1.38329 * 120.35512 * 179.71875 * 13 12 10 15 15 C 1.37753 * 120.41246 * 0.55821 * 14 13 12 16 16 C 1.40752 * 120.03875 * 359.71871 * 15 14 13 17 17 C 1.41439 * 120.17871 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99545 * 24.44035 * 17 16 15 19 19 C 1.39939 * 120.00394 * 204.44133 * 17 16 15 20 20 N 1.30826 * 119.99591 * 17.87943 * 19 17 16 21 21 Si 1.86795 * 120.00089 * 197.88145 * 19 17 16 22 22 H 1.48500 * 109.47248 * 59.99913 * 21 19 17 23 23 H 1.48501 * 109.47038 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46996 * 299.99565 * 21 19 17 25 25 C 1.38991 * 120.02586 * 179.97438 * 12 10 9 26 26 H 1.08998 * 109.46967 * 59.99977 * 1 2 3 27 27 H 1.09001 * 109.46669 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46993 * 299.99734 * 1 2 3 29 29 H 1.08999 * 109.47661 * 295.00186 * 4 2 1 30 30 H 1.09009 * 109.46961 * 54.99802 * 4 2 1 31 31 H 1.08997 * 109.46879 * 300.00128 * 5 4 2 32 32 H 1.09001 * 109.47222 * 60.00379 * 5 4 2 33 33 H 1.08997 * 109.47321 * 299.99708 * 6 5 4 34 34 H 1.08996 * 109.47643 * 60.00332 * 6 5 4 35 35 H 1.09004 * 109.47462 * 300.00279 * 7 6 5 36 36 H 1.09001 * 109.47222 * 60.00231 * 7 6 5 37 37 H 1.00899 * 111.00239 * 56.05135 * 8 7 6 38 38 H 1.00910 * 110.99626 * 180.02562 * 8 7 6 39 39 H 0.96994 * 120.00219 * 95.00129 * 9 2 1 40 40 H 1.07997 * 119.82038 * 359.97289 * 13 12 10 41 41 H 1.08003 * 119.79464 * 180.25484 * 14 13 12 42 42 H 1.08008 * 119.98260 * 179.74177 * 15 14 13 43 43 H 0.97004 * 119.99686 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.20595 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5633 7 6 5.5996 -1.2255 -2.6281 8 7 6.0892 -1.9180 -3.8275 9 7 2.0184 -0.6907 1.1961 10 6 2.1418 -0.0197 2.3585 11 8 1.8528 1.1597 2.4131 12 6 2.6290 -0.7183 3.5675 13 6 2.9565 -2.0773 3.5065 14 6 3.4184 -2.7362 4.6317 15 6 3.5504 -2.0654 5.8276 16 6 3.2204 -0.6996 5.9096 17 6 3.3553 -0.0078 7.1358 18 1 4.0490 -0.3639 7.8832 19 6 2.5901 1.1380 7.3808 20 7 1.5225 1.3771 6.6636 21 14 3.0932 2.3258 8.7318 22 1 4.4506 2.8554 8.4451 23 1 2.1245 3.4499 8.7886 24 1 3.1040 1.6161 10.0362 25 6 2.7570 -0.0267 4.7663 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9995 -1.0728 -0.4260 33 1 3.7865 -2.3843 -2.5200 34 1 3.6402 -0.8742 -3.4508 35 1 5.8876 -0.1751 -2.6715 36 1 6.0346 -1.6851 -1.7406 37 1 5.6511 -1.5531 -4.6599 38 1 7.0946 -1.8609 -3.8929 39 1 2.2491 -1.6318 1.1526 40 1 2.8520 -2.6137 2.5750 41 1 3.6724 -3.7843 4.5734 42 1 3.9077 -2.5877 6.7029 43 1 0.9923 2.1716 6.8331 44 1 2.5020 1.0214 4.8188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593907027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:59 Heat of formation + Delta-G solvation = -49.501984 kcal Electronic energy + Delta-G solvation = -22599.128215 eV Core-core repulsion = 19321.544350 eV Total energy + Delta-G solvation = -3277.583866 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.34 seconds Orbital eigenvalues (eV) -39.39640 -37.39699 -36.65860 -35.32626 -33.74737 -32.57191 -30.99362 -29.54652 -29.30357 -27.40569 -25.30785 -23.58590 -22.56539 -21.22233 -21.03258 -20.42298 -19.55176 -17.72265 -16.43166 -16.08271 -15.86647 -15.40681 -15.07465 -14.74860 -14.62845 -14.23362 -13.86976 -13.53038 -13.33489 -13.06937 -12.89287 -12.70005 -12.47915 -12.23397 -12.01892 -11.66582 -11.57409 -11.39918 -11.14938 -11.07463 -10.95179 -10.72848 -10.71956 -10.56288 -10.48688 -10.00474 -9.68158 -9.19954 -9.01100 -8.96359 -8.60469 -7.61333 -7.50743 -6.79260 -4.40483 2.23929 2.83319 3.07767 3.09468 3.17446 3.74526 3.89618 3.93238 4.18756 4.64831 4.67791 4.79087 4.87841 5.13262 5.21736 5.30471 5.42855 5.59760 5.62153 5.63865 5.69782 5.74125 5.75602 5.87858 5.90034 6.06282 6.12060 6.24182 6.28248 6.29818 6.39931 6.73592 6.80652 6.95910 7.00828 7.05239 7.10234 7.22666 7.39739 7.71996 7.78309 7.94382 8.13559 8.21921 8.51854 8.81235 8.84860 9.01061 10.15411 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.003380 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.453270 B = 8281.589244 C = 8780.193808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.142 3.858 3 H 0.084 0.916 4 C -0.123 4.123 5 C -0.121 4.121 6 C -0.116 4.116 7 C 0.058 3.942 8 N -0.854 5.854 9 N -0.731 5.731 10 C 0.564 3.436 11 O -0.548 6.548 12 C -0.128 4.128 13 C -0.218 4.218 14 C -0.098 4.098 15 C -0.213 4.213 16 C 0.099 3.901 17 C -0.461 4.461 18 H 0.081 0.919 19 C 0.073 3.927 20 N -0.783 5.783 21 Si 0.910 3.090 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.265 1.265 25 C -0.093 4.093 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.026 0.974 36 H 0.073 0.927 37 H 0.338 0.662 38 H 0.341 0.659 39 H 0.397 0.603 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.095 0.905 43 H 0.285 0.715 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.582 -3.328 -15.574 16.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.037 3.963 3 H 0.102 0.898 4 C -0.161 4.161 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.073 4.073 8 N -0.383 5.383 9 N -0.384 5.384 10 C 0.355 3.645 11 O -0.426 6.426 12 C -0.131 4.131 13 C -0.238 4.238 14 C -0.116 4.116 15 C -0.233 4.233 16 C 0.096 3.904 17 C -0.490 4.490 18 H 0.099 0.901 19 C -0.146 4.146 20 N -0.407 5.407 21 Si 0.735 3.265 22 H -0.187 1.187 23 H -0.202 1.202 24 H -0.190 1.190 25 C -0.113 4.113 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.150 0.850 38 H 0.153 0.847 39 H 0.233 0.767 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.113 0.887 43 H 0.096 0.904 44 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.843 -2.947 -15.228 15.620 hybrid contribution 0.523 0.954 0.282 1.123 sum 2.366 -1.993 -14.947 15.263 Atomic orbital electron populations 1.22185 0.95791 1.01889 1.02305 1.20855 0.93689 0.97564 0.84208 0.89808 1.21867 0.95745 1.01123 0.97375 1.21570 0.95379 1.00884 0.98044 1.21575 0.94370 1.01452 0.98013 1.21852 0.95952 0.95864 0.93639 1.58734 1.11136 1.63075 1.05349 1.46041 1.68997 1.14040 1.09352 1.18835 0.76209 0.86306 0.83160 1.90686 1.50485 1.16196 1.85212 1.19501 1.06078 0.94369 0.93199 1.20337 1.11964 0.93913 0.97551 1.20433 1.00179 0.97553 0.93457 1.21096 1.11050 0.94573 0.96544 1.17599 0.89385 0.90634 0.92771 1.19557 1.20345 1.07936 1.01131 0.90138 1.25963 0.93386 0.97951 0.97287 1.69787 1.10354 1.24923 1.35673 0.86328 0.79682 0.79581 0.80947 1.18724 1.20235 1.18972 1.21634 0.99638 1.00449 0.89572 0.92231 0.92682 0.91825 0.91426 0.90806 0.91970 0.91215 0.91171 0.92417 0.95600 0.90816 0.85008 0.84737 0.76727 0.89272 0.88954 0.88670 0.90401 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.14 9.48 37.16 0.35 -1.79 16 2 C 0.14 1.94 2.57 -67.93 -0.17 1.76 16 3 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 4 C -0.12 -1.24 4.75 -26.73 -0.13 -1.36 16 5 C -0.12 -1.23 5.10 -26.73 -0.14 -1.37 16 6 C -0.12 -1.03 5.47 -26.73 -0.15 -1.17 16 7 C 0.06 0.51 6.79 -3.82 -0.03 0.49 16 8 N -0.85 -6.80 9.62 -10.37 -0.10 -6.90 16 9 N -0.73 -11.88 4.48 -54.74 -0.25 -12.12 16 10 C 0.56 12.27 7.74 -12.31 -0.10 12.17 16 11 O -0.55 -13.68 16.00 5.32 0.09 -13.59 16 12 C -0.13 -3.03 5.87 -105.04 -0.62 -3.65 16 13 C -0.22 -4.57 9.55 -38.92 -0.37 -4.94 16 14 C -0.10 -2.10 10.01 -39.73 -0.40 -2.49 16 15 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 16 C 0.10 2.62 5.57 -106.87 -0.60 2.03 16 17 C -0.46 -12.17 9.05 -37.73 -0.34 -12.51 16 18 H 0.08 2.01 7.91 -52.48 -0.42 1.60 16 19 C 0.07 1.86 5.14 -17.34 -0.09 1.78 16 20 N -0.78 -20.88 10.96 55.55 0.61 -20.27 16 21 Si 0.91 18.88 29.60 -169.99 -5.03 13.85 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 C -0.09 -2.49 8.24 -38.44 -0.32 -2.80 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.81 7.75 -51.93 -0.40 0.40 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.03 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.34 2.22 8.99 -39.29 -0.35 1.86 16 38 H 0.34 2.22 9.08 -39.29 -0.36 1.87 16 39 H 0.40 5.69 6.62 -40.82 -0.27 5.42 16 40 H 0.09 1.55 6.38 -52.49 -0.33 1.21 16 41 H 0.09 1.68 8.06 -52.48 -0.42 1.25 16 42 H 0.10 2.11 8.06 -52.48 -0.42 1.69 16 43 H 0.28 7.00 8.30 -40.82 -0.34 6.66 16 44 H 0.13 3.86 5.74 -52.49 -0.30 3.56 16 LS Contribution 362.97 15.07 5.47 5.47 Total: -1.00 -29.83 362.97 -9.71 -39.54 By element: Atomic # 1 Polarization: 20.38 SS G_CDS: -7.04 Total: 13.34 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -3.46 Total: -19.32 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.26 Total: -39.29 kcal Atomic # 8 Polarization: -13.68 SS G_CDS: 0.09 Total: -13.59 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.83 -9.71 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593907027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.960 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.34 seconds