Wall clock time and date at job start Tue Mar 31 2020 07:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46975 * 2 1 4 4 C 1.52995 * 109.47120 * 239.99917 * 2 1 3 5 5 C 1.53001 * 109.47169 * 174.99921 * 4 2 1 6 6 C 1.53002 * 109.46932 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46932 * 179.97438 * 6 5 4 8 8 N 1.46901 * 109.47062 * 179.97438 * 7 6 5 9 9 N 1.46500 * 109.46976 * 120.00251 * 2 1 3 10 10 C 1.34779 * 119.99957 * 275.27358 * 9 2 1 11 11 O 1.21554 * 119.99609 * 359.72401 * 10 9 2 12 12 C 1.47883 * 120.00368 * 179.72800 * 10 9 2 13 13 C 1.39924 * 120.02065 * 359.72607 * 12 10 9 14 14 C 1.38329 * 120.35512 * 179.71875 * 13 12 10 15 15 C 1.37753 * 120.41246 * 0.55821 * 14 13 12 16 16 C 1.40752 * 120.03875 * 359.71871 * 15 14 13 17 17 C 1.41439 * 120.17871 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99545 * 24.44035 * 17 16 15 19 19 C 1.39939 * 120.00394 * 204.44133 * 17 16 15 20 20 N 1.30826 * 119.99591 * 17.87943 * 19 17 16 21 21 Si 1.86795 * 120.00089 * 197.88145 * 19 17 16 22 22 H 1.48500 * 109.47248 * 59.99913 * 21 19 17 23 23 H 1.48501 * 109.47038 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.46996 * 299.99565 * 21 19 17 25 25 C 1.38991 * 120.02586 * 179.97438 * 12 10 9 26 26 H 1.08998 * 109.46967 * 59.99977 * 1 2 3 27 27 H 1.09001 * 109.46669 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46993 * 299.99734 * 1 2 3 29 29 H 1.08999 * 109.47661 * 295.00186 * 4 2 1 30 30 H 1.09009 * 109.46961 * 54.99802 * 4 2 1 31 31 H 1.08997 * 109.46879 * 300.00128 * 5 4 2 32 32 H 1.09001 * 109.47222 * 60.00379 * 5 4 2 33 33 H 1.08997 * 109.47321 * 299.99708 * 6 5 4 34 34 H 1.08996 * 109.47643 * 60.00332 * 6 5 4 35 35 H 1.09004 * 109.47462 * 300.00279 * 7 6 5 36 36 H 1.09001 * 109.47222 * 60.00231 * 7 6 5 37 37 H 1.00899 * 111.00239 * 56.05135 * 8 7 6 38 38 H 1.00910 * 110.99626 * 180.02562 * 8 7 6 39 39 H 0.96994 * 120.00219 * 95.00129 * 9 2 1 40 40 H 1.07997 * 119.82038 * 359.97289 * 13 12 10 41 41 H 1.08003 * 119.79464 * 180.25484 * 14 13 12 42 42 H 1.08008 * 119.98260 * 179.74177 * 15 14 13 43 43 H 0.97004 * 119.99686 * 180.02562 * 20 19 17 44 44 H 1.07995 * 120.20595 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6133 -1.3137 6 6 4.0748 -1.3340 -2.5633 7 6 5.5996 -1.2255 -2.6281 8 7 6.0892 -1.9180 -3.8275 9 7 2.0184 -0.6907 1.1961 10 6 2.1418 -0.0197 2.3585 11 8 1.8528 1.1597 2.4131 12 6 2.6290 -0.7183 3.5675 13 6 2.9565 -2.0773 3.5065 14 6 3.4184 -2.7362 4.6317 15 6 3.5504 -2.0654 5.8276 16 6 3.2204 -0.6996 5.9096 17 6 3.3553 -0.0078 7.1358 18 1 4.0490 -0.3639 7.8832 19 6 2.5901 1.1380 7.3808 20 7 1.5225 1.3771 6.6636 21 14 3.0932 2.3258 8.7318 22 1 4.4506 2.8554 8.4451 23 1 2.1245 3.4499 8.7886 24 1 3.1040 1.6161 10.0362 25 6 2.7570 -0.0267 4.7663 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.7517 -1.7715 -1.2056 30 1 1.6053 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9995 -1.0728 -0.4260 33 1 3.7865 -2.3843 -2.5200 34 1 3.6402 -0.8742 -3.4508 35 1 5.8876 -0.1751 -2.6715 36 1 6.0346 -1.6851 -1.7406 37 1 5.6511 -1.5531 -4.6599 38 1 7.0946 -1.8609 -3.8929 39 1 2.2491 -1.6318 1.1526 40 1 2.8520 -2.6137 2.5750 41 1 3.6724 -3.7843 4.5734 42 1 3.9077 -2.5877 6.7029 43 1 0.9923 2.1716 6.8331 44 1 2.5020 1.0214 4.8188 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593907027.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:43:56 Heat of formation + Delta-G solvation = -68.861485 kcal Electronic energy + Delta-G solvation = -22599.967706 eV Core-core repulsion = 19321.544350 eV Total energy + Delta-G solvation = -3278.423357 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = -1.63 seconds Orbital eigenvalues (eV) -41.01004 -38.99887 -37.87594 -36.37161 -35.61090 -33.69565 -32.39013 -31.32405 -30.91586 -28.22875 -27.20872 -24.92385 -23.76436 -22.82823 -21.96453 -21.67637 -21.22399 -19.50911 -17.89127 -17.48057 -16.92909 -16.69501 -16.38974 -16.22612 -15.83923 -15.50176 -15.43325 -15.05284 -14.54166 -14.48569 -14.26388 -14.07217 -13.93879 -13.47525 -13.18311 -13.06126 -12.90372 -12.80398 -12.55250 -12.34899 -12.27858 -12.20570 -11.90870 -11.80941 -11.60502 -11.50204 -11.43917 -11.06908 -10.72310 -10.08245 -9.63003 -9.46386 -9.38048 -8.67040 -6.38521 0.39970 1.01476 1.35186 1.47123 1.49987 2.12537 2.18980 2.32072 2.79326 3.47776 3.70398 3.88770 3.98433 4.02535 4.10948 4.30305 4.33090 4.42940 4.48188 4.56374 4.59494 4.72135 4.79743 4.85082 4.89718 4.93622 4.95983 5.07829 5.10377 5.17676 5.21087 5.30464 5.32110 5.37328 5.48062 5.52019 5.64928 5.87449 5.93477 6.05452 6.21786 6.29106 6.53093 6.58952 6.73018 6.87550 6.94911 7.37572 8.29533 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018435 B = 0.003380 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.453270 B = 8281.589244 C = 8780.193808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.060 0.940 4 C -0.110 4.110 5 C -0.119 4.119 6 C -0.107 4.107 7 C 0.057 3.943 8 N -0.859 5.859 9 N -0.706 5.706 10 C 0.560 3.440 11 O -0.591 6.591 12 C -0.139 4.139 13 C -0.197 4.197 14 C -0.096 4.096 15 C -0.218 4.218 16 C 0.067 3.933 17 C -0.499 4.499 18 H 0.084 0.916 19 C 0.029 3.971 20 N -0.825 5.825 21 Si 0.983 3.017 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.252 1.252 25 C -0.132 4.132 26 H 0.087 0.913 27 H 0.071 0.929 28 H 0.024 0.976 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.347 0.653 38 H 0.348 0.652 39 H 0.410 0.590 40 H 0.136 0.864 41 H 0.138 0.862 42 H 0.108 0.892 43 H 0.286 0.714 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.928 -5.531 -17.645 18.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.078 0.922 4 C -0.148 4.148 5 C -0.157 4.157 6 C -0.145 4.145 7 C -0.074 4.074 8 N -0.390 5.390 9 N -0.359 5.359 10 C 0.350 3.650 11 O -0.473 6.473 12 C -0.143 4.143 13 C -0.216 4.216 14 C -0.114 4.114 15 C -0.238 4.238 16 C 0.064 3.936 17 C -0.528 4.528 18 H 0.102 0.898 19 C -0.186 4.186 20 N -0.451 5.451 21 Si 0.803 3.197 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.176 1.176 25 C -0.153 4.153 26 H 0.106 0.894 27 H 0.090 0.910 28 H 0.043 0.957 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.160 0.840 38 H 0.161 0.839 39 H 0.248 0.752 40 H 0.154 0.846 41 H 0.156 0.844 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.198 -5.207 -17.346 18.243 hybrid contribution 0.437 1.480 0.734 1.709 sum 2.635 -3.727 -16.612 17.227 Atomic orbital electron populations 1.22150 0.94989 1.02775 1.01817 1.21106 0.94303 0.96806 0.84510 0.92170 1.21815 0.95377 1.01789 0.95835 1.21533 0.95579 1.00365 0.98249 1.21474 0.94155 1.01234 0.97602 1.21808 0.96150 0.95766 0.93704 1.58721 1.11894 1.62967 1.05419 1.45872 1.67096 1.14404 1.08483 1.18716 0.76223 0.85833 0.84226 1.90663 1.52549 1.18087 1.85981 1.19835 1.05592 0.95778 0.93068 1.20843 1.08769 0.92584 0.99441 1.20924 0.98604 0.99598 0.92241 1.21407 1.10347 0.93705 0.98359 1.17951 0.90454 0.92198 0.92953 1.19845 1.21550 1.09686 1.01725 0.89795 1.26867 0.92823 0.99276 0.99637 1.69894 1.11726 1.25644 1.37837 0.85242 0.79128 0.77188 0.78136 1.18490 1.19681 1.17550 1.21438 1.02909 0.99418 0.91499 0.89422 0.91028 0.95666 0.89603 0.88407 0.92980 0.92726 0.91129 0.91136 0.95745 0.91977 0.84032 0.83933 0.75173 0.84620 0.84386 0.87406 0.90338 0.88457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.90 9.48 71.98 0.68 -3.22 16 2 C 0.14 3.53 2.57 44.99 0.12 3.65 16 3 H 0.06 1.88 7.58 -2.39 -0.02 1.86 16 4 C -0.11 -1.84 4.75 30.59 0.15 -1.70 16 5 C -0.12 -2.16 5.10 30.60 0.16 -2.00 16 6 C -0.11 -1.58 5.47 30.60 0.17 -1.42 16 7 C 0.06 0.90 6.79 86.30 0.59 1.49 16 8 N -0.86 -11.85 9.62 -186.71 -1.80 -13.65 16 9 N -0.71 -21.99 4.48 -445.37 -2.00 -23.99 16 10 C 0.56 24.81 7.74 86.80 0.67 25.48 16 11 O -0.59 -31.15 16.00 -3.89 -0.06 -31.21 16 12 C -0.14 -6.67 5.87 -20.13 -0.12 -6.79 16 13 C -0.20 -7.76 9.55 22.70 0.22 -7.54 16 14 C -0.10 -3.82 10.01 22.18 0.22 -3.60 16 15 C -0.22 -10.32 9.78 22.77 0.22 -10.10 16 16 C 0.07 3.68 5.57 -21.32 -0.12 3.56 16 17 C -0.50 -27.55 9.05 23.47 0.21 -27.34 16 18 H 0.08 4.36 7.91 -2.91 -0.02 4.33 16 19 C 0.03 1.53 5.14 85.25 0.44 1.97 16 20 N -0.83 -46.84 10.96 21.82 0.24 -46.60 16 21 Si 0.98 40.18 29.60 68.60 2.03 42.21 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 23 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 24 H -0.25 -9.64 7.11 99.48 0.71 -8.94 16 25 C -0.13 -7.45 8.24 23.01 0.19 -7.26 16 26 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.05 1.15 7.75 -2.39 -0.02 1.13 16 33 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.02 0.39 8.14 -2.38 -0.02 0.37 16 36 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.35 3.72 8.99 -89.69 -0.81 2.91 16 38 H 0.35 3.92 9.08 -89.69 -0.81 3.11 16 39 H 0.41 10.43 6.62 -92.71 -0.61 9.82 16 40 H 0.14 4.04 6.38 -2.91 -0.02 4.02 16 41 H 0.14 4.28 8.06 -2.91 -0.02 4.26 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 43 H 0.29 15.01 8.30 -92.71 -0.77 14.24 16 44 H 0.10 6.13 5.74 -2.91 -0.02 6.12 16 Total: -1.00 -70.49 362.97 0.98 -69.51 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -1.22 Total: 38.55 kcal Atomic # 6 Polarization: -38.61 SS G_CDS: 3.79 Total: -34.82 kcal Atomic # 7 Polarization: -80.69 SS G_CDS: -3.55 Total: -84.24 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.06 Total: -31.21 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.21 kcal Total: -70.49 0.98 -69.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593907027.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.647 kcal (2) G-P(sol) polarization free energy of solvation -70.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -1.63 seconds