Wall clock time and date at job start Tue Mar 31 2020 08:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46547 * 2 1 4 4 C 1.53000 * 109.46873 * 240.00266 * 2 1 3 5 5 C 1.53003 * 109.47137 * 64.53203 * 4 2 1 6 6 N 1.46496 * 109.47009 * 179.24540 * 5 4 2 7 7 C 1.34780 * 119.99888 * 179.97438 * 6 5 4 8 8 O 1.21575 * 120.00031 * 0.02562 * 7 6 5 9 9 C 1.47646 * 119.99824 * 180.02562 * 7 6 5 10 10 C 1.40016 * 119.89416 * 359.73150 * 9 7 6 11 11 C 1.36323 * 120.10353 * 179.71703 * 10 9 7 12 12 C 1.40888 * 119.88693 * 0.57625 * 11 10 9 13 13 C 1.41107 * 120.09857 * 179.67798 * 12 11 10 14 14 H 1.08004 * 120.00211 * 206.31660 * 13 12 11 15 15 C 1.40230 * 120.00154 * 26.31051 * 13 12 11 16 16 N 1.30638 * 120.00059 * 15.98343 * 15 13 12 17 17 Si 1.86800 * 119.99813 * 195.98005 * 15 13 12 18 18 H 1.48501 * 109.47213 * 90.00300 * 17 15 13 19 19 H 1.48506 * 109.47029 * 209.99854 * 17 15 13 20 20 H 1.48499 * 109.47423 * 330.00061 * 17 15 13 21 21 C 1.40884 * 119.80027 * 359.69604 * 12 11 10 22 22 C 1.36318 * 119.88812 * 0.02562 * 21 12 11 23 23 N 1.46897 * 109.46973 * 120.00329 * 2 1 3 24 24 C 1.46907 * 110.99843 * 184.51504 * 23 2 1 25 25 C 1.46899 * 111.00156 * 308.46492 * 23 2 1 26 26 H 1.08996 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47304 * 59.99478 * 1 2 3 28 28 H 1.09007 * 109.46864 * 299.99643 * 1 2 3 29 29 H 1.09001 * 109.46687 * 184.53062 * 4 2 1 30 30 H 1.09000 * 109.47111 * 304.53407 * 4 2 1 31 31 H 1.09001 * 109.47031 * 299.25088 * 5 4 2 32 32 H 1.08997 * 109.46893 * 59.24819 * 5 4 2 33 33 H 0.96997 * 119.99931 * 0.02562 * 6 5 4 34 34 H 1.07993 * 119.94576 * 359.97438 * 10 9 7 35 35 H 1.07992 * 120.05067 * 180.25095 * 11 10 9 36 36 H 0.97005 * 120.00536 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.05568 * 179.97438 * 21 12 11 38 38 H 1.08001 * 119.94766 * 179.97438 * 22 21 12 39 39 H 1.09005 * 109.47044 * 52.87230 * 24 23 2 40 40 H 1.08999 * 109.47243 * 172.87060 * 24 23 2 41 41 H 1.09003 * 109.46509 * 292.87566 * 24 23 2 42 42 H 1.09003 * 109.47427 * 60.00044 * 25 23 2 43 43 H 1.08995 * 109.47618 * 180.02562 * 25 23 2 44 44 H 1.09005 * 109.47095 * 300.00329 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6251 0.0629 -2.4959 6 7 2.1288 -0.6181 -3.6912 7 6 1.8825 -0.1053 -4.9130 8 8 1.2428 0.9226 -5.0232 9 6 2.3897 -0.7919 -6.1177 10 6 3.1311 -1.9726 -5.9879 11 6 3.5965 -2.6132 -7.0976 12 6 3.3408 -2.0787 -8.3758 13 6 3.8262 -2.7345 -9.5271 14 1 4.0193 -2.1714 -10.4283 15 6 4.0581 -4.1172 -9.5012 16 7 3.5453 -4.8477 -8.5472 17 14 5.1000 -4.9146 -10.8308 18 1 6.5236 -4.9191 -10.4080 19 1 4.6434 -6.3112 -11.0465 20 1 4.9614 -4.1477 -12.0948 21 6 2.5992 -0.8874 -8.5011 22 6 2.1331 -0.2570 -7.3859 23 7 2.0197 -0.6926 1.1994 24 6 3.4842 -0.6194 1.2885 25 6 1.3909 -0.1530 2.4124 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 3.1270 -0.7920 -1.2096 30 1 1.6118 -1.7227 -1.2909 31 1 0.5377 0.1224 -2.5426 32 1 2.0422 1.0688 -2.4479 33 1 2.6390 -1.4384 -3.6033 34 1 3.3310 -2.3786 -5.0074 35 1 4.1648 -3.5259 -6.9967 36 1 3.7060 -5.8042 -8.5289 37 1 2.4011 -0.4739 -9.4789 38 1 1.5648 0.6565 -7.4808 39 1 3.8015 0.4205 1.2096 40 1 3.8108 -1.0273 2.2451 41 1 3.9268 -1.1969 0.4770 42 1 0.3104 -0.2832 2.3503 43 1 1.7714 -0.6831 3.2855 44 1 1.6244 0.9080 2.5016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597993332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:46 Heat of formation + Delta-G solvation = -26.695199 kcal Electronic energy + Delta-G solvation = -22243.066878 eV Core-core repulsion = 18966.471989 eV Total energy + Delta-G solvation = -3276.594889 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.25209 -38.48654 -37.09247 -34.82144 -33.84686 -32.26387 -30.27737 -29.44984 -29.12664 -27.24142 -25.79783 -24.82808 -22.83400 -21.64899 -20.87012 -20.26014 -19.39816 -17.51768 -16.88478 -16.28903 -15.65826 -15.50822 -15.07295 -14.93244 -14.75940 -14.01906 -13.91817 -13.72268 -13.21749 -13.07690 -12.75756 -12.70267 -12.54050 -12.14531 -12.01277 -11.93317 -11.86051 -11.74134 -11.38448 -11.29926 -11.25521 -11.07201 -10.94702 -10.73422 -10.61802 -10.01994 -9.54518 -9.37436 -8.96054 -8.61935 -8.54165 -7.71435 -7.51945 -7.01026 -4.59913 2.23848 2.92761 2.96326 2.98929 3.03773 3.54482 3.75153 3.88930 3.91856 4.58252 4.68432 4.75136 4.87840 5.06873 5.12217 5.22898 5.26966 5.31140 5.42050 5.53832 5.56198 5.57815 5.63663 5.73168 5.77987 5.95282 5.98249 6.05449 6.17245 6.25115 6.32425 6.77220 6.77903 6.80039 6.84191 6.96036 7.07350 7.14022 7.44689 7.65811 7.79623 7.86717 8.08203 8.25980 8.40960 8.64102 8.75857 9.09349 9.91299 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025609 B = 0.002732 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.087729 B =10248.197549 C =11034.357354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.085 3.915 3 H 0.044 0.956 4 C -0.125 4.125 5 C 0.124 3.876 6 N -0.742 5.742 7 C 0.571 3.429 8 O -0.577 6.577 9 C -0.282 4.282 10 C -0.063 4.063 11 C -0.176 4.176 12 C 0.129 3.871 13 C -0.444 4.444 14 H 0.084 0.916 15 C 0.074 3.926 16 N -0.775 5.775 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.259 1.259 21 C -0.238 4.238 22 C -0.023 4.023 23 N -0.543 5.543 24 C 0.021 3.979 25 C 0.021 3.979 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.069 0.931 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.026 0.974 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 2.583 15.708 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.024 4.024 3 H 0.061 0.939 4 C -0.163 4.163 5 C 0.000 4.000 6 N -0.395 5.395 7 C 0.366 3.634 8 O -0.459 6.459 9 C -0.287 4.287 10 C -0.083 4.083 11 C -0.195 4.195 12 C 0.125 3.875 13 C -0.472 4.472 14 H 0.103 0.897 15 C -0.147 4.147 16 N -0.398 5.398 17 Si 0.738 3.262 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.257 4.257 22 C -0.043 4.043 23 N -0.268 5.268 24 C -0.128 4.128 25 C -0.127 4.127 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.075 0.925 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.138 0.862 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.119 0.881 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -0.757 2.569 15.693 15.920 hybrid contribution 0.921 -0.075 -0.327 0.981 sum 0.165 2.494 15.366 15.567 Atomic orbital electron populations 1.22037 0.94081 1.02921 1.02102 1.21571 0.95837 0.95359 0.89599 0.93853 1.21831 1.01597 1.00302 0.92537 1.21184 0.99280 0.95833 0.83730 1.45892 1.58712 1.29322 1.05578 1.18588 0.78176 0.83627 0.83040 1.90625 1.42607 1.25545 1.87108 1.18923 1.16025 1.01845 0.91882 1.20484 0.96763 0.93894 0.97119 1.20977 1.05140 1.01867 0.91532 1.17797 0.86472 0.90106 0.93085 1.19842 1.36120 0.92503 0.98747 0.89745 1.26087 0.93955 0.97785 0.96897 1.69732 1.32073 1.07843 1.30179 0.86198 0.80404 0.78480 0.81107 1.18977 1.20033 1.18317 1.20737 1.07228 1.01148 0.96594 1.20370 0.95497 0.96859 0.91525 1.62010 1.06240 1.56148 1.02354 1.22445 0.87645 0.99995 1.02678 1.22453 1.00610 0.97413 0.92272 0.91531 0.91411 0.92500 0.91197 0.90346 0.91800 0.92413 0.76761 0.89297 0.86203 0.90273 0.88362 0.88105 0.95572 0.91541 0.90890 0.90810 0.91550 0.95807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.41 37.16 0.31 -1.11 16 2 C 0.08 0.84 2.15 -67.71 -0.15 0.70 16 3 H 0.04 0.45 8.07 -51.93 -0.42 0.03 16 4 C -0.12 -1.36 4.80 -26.73 -0.13 -1.49 16 5 C 0.12 1.74 5.40 -4.04 -0.02 1.72 16 6 N -0.74 -12.52 5.50 -61.31 -0.34 -12.86 16 7 C 0.57 12.31 7.76 -12.42 -0.10 12.22 16 8 O -0.58 -13.93 16.32 5.30 0.09 -13.85 16 9 C -0.28 -6.51 5.89 -104.73 -0.62 -7.12 16 10 C -0.06 -1.41 9.47 -39.60 -0.38 -1.78 16 11 C -0.18 -4.32 8.62 -39.27 -0.34 -4.65 16 12 C 0.13 3.29 5.56 -106.81 -0.59 2.69 16 13 C -0.44 -11.08 9.05 -37.75 -0.34 -11.42 16 14 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 15 C 0.07 1.72 5.16 -17.31 -0.09 1.63 16 16 N -0.77 -18.62 10.95 55.56 0.61 -18.02 16 17 Si 0.91 17.34 29.59 -169.99 -5.03 12.31 16 18 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 19 H -0.28 -5.11 7.11 56.52 0.40 -4.71 16 20 H -0.26 -4.89 7.11 56.52 0.40 -4.49 16 21 C -0.24 -5.79 9.73 -39.27 -0.38 -6.17 16 22 C -0.02 -0.55 9.52 -39.61 -0.38 -0.93 16 23 N -0.54 -5.14 4.89 -243.17 -1.19 -6.33 16 24 C 0.02 0.17 9.20 60.07 0.55 0.73 16 25 C 0.02 0.16 8.96 60.06 0.54 0.70 16 26 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.66 6.57 -51.93 -0.34 0.32 16 28 H 0.06 0.46 6.32 -51.92 -0.33 0.13 16 29 H 0.07 0.74 6.46 -51.93 -0.34 0.40 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 0.93 6.59 -51.93 -0.34 0.59 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.40 5.99 6.47 -40.82 -0.26 5.73 16 34 H 0.09 1.67 6.37 -52.49 -0.33 1.33 16 35 H 0.12 2.97 6.21 -52.49 -0.33 2.65 16 36 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 37 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 39 H 0.03 0.22 8.06 -51.93 -0.42 -0.20 16 40 H 0.07 0.48 7.99 -51.93 -0.42 0.07 16 41 H 0.07 0.62 6.69 -51.93 -0.35 0.28 16 42 H 0.07 0.54 6.20 -51.93 -0.32 0.22 16 43 H 0.07 0.45 8.04 -51.93 -0.42 0.04 16 44 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -28.57 352.75 -9.32 -37.89 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -6.67 Total: 9.84 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: -2.10 Total: -14.30 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: -0.92 Total: -37.21 kcal Atomic # 8 Polarization: -13.93 SS G_CDS: 0.09 Total: -13.85 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.57 -9.32 -37.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597993332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.197 kcal (2) G-P(sol) polarization free energy of solvation -28.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds