Wall clock time and date at job start Tue Mar 31 2020 08:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.46547 * 2 1 4 4 C 1.53000 * 109.46873 * 240.00266 * 2 1 3 5 5 C 1.53003 * 109.47137 * 64.53203 * 4 2 1 6 6 N 1.46496 * 109.47009 * 179.24540 * 5 4 2 7 7 C 1.34780 * 119.99888 * 179.97438 * 6 5 4 8 8 O 1.21575 * 120.00031 * 0.02562 * 7 6 5 9 9 C 1.47646 * 119.99824 * 180.02562 * 7 6 5 10 10 C 1.40016 * 119.89416 * 359.73150 * 9 7 6 11 11 C 1.36323 * 120.10353 * 179.71703 * 10 9 7 12 12 C 1.40888 * 119.88693 * 0.57625 * 11 10 9 13 13 C 1.41107 * 120.09857 * 179.67798 * 12 11 10 14 14 H 1.08004 * 120.00211 * 206.31660 * 13 12 11 15 15 C 1.40230 * 120.00154 * 26.31051 * 13 12 11 16 16 N 1.30638 * 120.00059 * 15.98343 * 15 13 12 17 17 Si 1.86800 * 119.99813 * 195.98005 * 15 13 12 18 18 H 1.48501 * 109.47213 * 90.00300 * 17 15 13 19 19 H 1.48506 * 109.47029 * 209.99854 * 17 15 13 20 20 H 1.48499 * 109.47423 * 330.00061 * 17 15 13 21 21 C 1.40884 * 119.80027 * 359.69604 * 12 11 10 22 22 C 1.36318 * 119.88812 * 0.02562 * 21 12 11 23 23 N 1.46897 * 109.46973 * 120.00329 * 2 1 3 24 24 C 1.46907 * 110.99843 * 184.51504 * 23 2 1 25 25 C 1.46899 * 111.00156 * 308.46492 * 23 2 1 26 26 H 1.08996 * 109.47239 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47304 * 59.99478 * 1 2 3 28 28 H 1.09007 * 109.46864 * 299.99643 * 1 2 3 29 29 H 1.09001 * 109.46687 * 184.53062 * 4 2 1 30 30 H 1.09000 * 109.47111 * 304.53407 * 4 2 1 31 31 H 1.09001 * 109.47031 * 299.25088 * 5 4 2 32 32 H 1.08997 * 109.46893 * 59.24819 * 5 4 2 33 33 H 0.96997 * 119.99931 * 0.02562 * 6 5 4 34 34 H 1.07993 * 119.94576 * 359.97438 * 10 9 7 35 35 H 1.07992 * 120.05067 * 180.25095 * 11 10 9 36 36 H 0.97005 * 120.00536 * 180.02562 * 16 15 13 37 37 H 1.07996 * 120.05568 * 179.97438 * 21 12 11 38 38 H 1.08001 * 119.94766 * 179.97438 * 22 21 12 39 39 H 1.09005 * 109.47044 * 52.87230 * 24 23 2 40 40 H 1.08999 * 109.47243 * 172.87060 * 24 23 2 41 41 H 1.09003 * 109.46509 * 292.87566 * 24 23 2 42 42 H 1.09003 * 109.47427 * 60.00044 * 25 23 2 43 43 H 1.08995 * 109.47618 * 180.02562 * 25 23 2 44 44 H 1.09005 * 109.47095 * 300.00329 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6251 0.0629 -2.4959 6 7 2.1288 -0.6181 -3.6912 7 6 1.8825 -0.1053 -4.9130 8 8 1.2428 0.9226 -5.0232 9 6 2.3897 -0.7919 -6.1177 10 6 3.1311 -1.9726 -5.9879 11 6 3.5965 -2.6132 -7.0976 12 6 3.3408 -2.0787 -8.3758 13 6 3.8262 -2.7345 -9.5271 14 1 4.0193 -2.1714 -10.4283 15 6 4.0581 -4.1172 -9.5012 16 7 3.5453 -4.8477 -8.5472 17 14 5.1000 -4.9146 -10.8308 18 1 6.5236 -4.9191 -10.4080 19 1 4.6434 -6.3112 -11.0465 20 1 4.9614 -4.1477 -12.0948 21 6 2.5992 -0.8874 -8.5011 22 6 2.1331 -0.2570 -7.3859 23 7 2.0197 -0.6926 1.1994 24 6 3.4842 -0.6194 1.2885 25 6 1.3909 -0.1530 2.4124 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 0.5138 0.8901 29 1 3.1270 -0.7920 -1.2096 30 1 1.6118 -1.7227 -1.2909 31 1 0.5377 0.1224 -2.5426 32 1 2.0422 1.0688 -2.4479 33 1 2.6390 -1.4384 -3.6033 34 1 3.3310 -2.3786 -5.0074 35 1 4.1648 -3.5259 -6.9967 36 1 3.7060 -5.8042 -8.5289 37 1 2.4011 -0.4739 -9.4789 38 1 1.5648 0.6565 -7.4808 39 1 3.8015 0.4205 1.2096 40 1 3.8108 -1.0273 2.2451 41 1 3.9268 -1.1969 0.4770 42 1 0.3104 -0.2832 2.3503 43 1 1.7714 -0.6831 3.2855 44 1 1.6244 0.9080 2.5016 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597993332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:45 Heat of formation + Delta-G solvation = -43.907002 kcal Electronic energy + Delta-G solvation = -22243.813238 eV Core-core repulsion = 18966.471989 eV Total energy + Delta-G solvation = -3277.341249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.82067 -39.44954 -38.82111 -36.13818 -35.65250 -33.39296 -31.93065 -31.29940 -30.05406 -28.31749 -27.28372 -25.68855 -24.06406 -23.19392 -22.65810 -21.46545 -20.68085 -19.35739 -18.44070 -17.46035 -17.11810 -16.64995 -16.37043 -15.83618 -15.77341 -15.66471 -15.29258 -15.01770 -14.98617 -14.42417 -14.14264 -13.88833 -13.66648 -13.46227 -13.25311 -13.19602 -12.86333 -12.79290 -12.74955 -12.61563 -12.54394 -12.37056 -12.14714 -11.88107 -11.75314 -11.55396 -11.36085 -11.13895 -10.71217 -10.05732 -9.57119 -9.38638 -9.29332 -8.77272 -6.48289 0.43875 1.14879 1.39799 1.43981 1.53972 2.13175 2.18504 2.35197 2.79621 2.99146 3.68889 3.86585 3.92571 4.02283 4.27755 4.31866 4.33502 4.36345 4.42835 4.44812 4.51285 4.60694 4.69663 4.73563 4.86653 4.92652 4.93979 4.98983 5.03694 5.05265 5.10305 5.15827 5.22765 5.30366 5.35279 5.56286 5.60821 5.82238 5.94563 5.99807 6.09465 6.12063 6.23400 6.54634 6.71224 6.77953 6.89208 7.43864 8.18123 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025609 B = 0.002732 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.087729 B =10248.197549 C =11034.357354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.087 3.913 3 H 0.040 0.960 4 C -0.112 4.112 5 C 0.125 3.875 6 N -0.725 5.725 7 C 0.570 3.430 8 O -0.607 6.607 9 C -0.292 4.292 10 C -0.054 4.054 11 C -0.195 4.195 12 C 0.101 3.899 13 C -0.474 4.474 14 H 0.085 0.915 15 C 0.037 3.963 16 N -0.801 5.801 17 Si 0.988 3.012 18 H -0.259 1.259 19 H -0.265 1.265 20 H -0.258 1.258 21 C -0.252 4.252 22 C -0.034 4.034 23 N -0.553 5.553 24 C 0.019 3.981 25 C 0.020 3.980 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.053 0.947 33 H 0.408 0.592 34 H 0.125 0.875 35 H 0.114 0.886 36 H 0.297 0.703 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.025 0.975 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 1.625 16.975 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 H 0.058 0.942 4 C -0.150 4.150 5 C 0.001 3.999 6 N -0.377 5.377 7 C 0.364 3.636 8 O -0.492 6.492 9 C -0.296 4.296 10 C -0.073 4.073 11 C -0.215 4.215 12 C 0.098 3.902 13 C -0.502 4.502 14 H 0.103 0.897 15 C -0.182 4.182 16 N -0.424 5.424 17 Si 0.808 3.192 18 H -0.183 1.183 19 H -0.190 1.190 20 H -0.182 1.182 21 C -0.271 4.271 22 C -0.054 4.054 23 N -0.278 5.278 24 C -0.129 4.129 25 C -0.128 4.128 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.142 0.858 35 H 0.132 0.868 36 H 0.108 0.892 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.044 0.956 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -0.088 1.598 17.009 17.084 hybrid contribution 0.667 0.252 -0.617 0.943 sum 0.578 1.850 16.392 16.506 Atomic orbital electron populations 1.22012 0.93688 1.02819 1.02392 1.21507 0.96148 0.95039 0.89486 0.94161 1.21719 1.02037 0.99819 0.91449 1.21329 0.98976 0.95918 0.83661 1.45765 1.57561 1.29299 1.05052 1.18415 0.78015 0.83229 0.83987 1.90606 1.44044 1.26811 1.87705 1.19205 1.15866 1.02156 0.92410 1.20740 0.95257 0.93066 0.98199 1.21019 1.06237 1.02235 0.91988 1.18154 0.87165 0.90808 0.94066 1.20102 1.37522 0.93758 0.98804 0.89732 1.26916 0.94468 0.97594 0.99202 1.69752 1.32421 1.08687 1.31586 0.85095 0.78547 0.77608 0.77914 1.18297 1.18965 1.18203 1.20876 1.07692 1.01372 0.97187 1.20522 0.95678 0.97075 0.92088 1.62014 1.06870 1.56296 1.02624 1.22485 0.87113 1.00023 1.03290 1.22505 1.00808 0.97626 0.91881 0.91782 0.92163 0.91226 0.90471 0.90214 0.92177 0.92868 0.75510 0.85751 0.86789 0.89225 0.87772 0.87937 0.95627 0.90373 0.91121 0.90434 0.90527 0.95616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 8.41 71.98 0.61 -1.97 16 2 C 0.09 1.57 2.15 44.92 0.10 1.67 16 3 H 0.04 0.76 8.07 -2.39 -0.02 0.74 16 4 C -0.11 -2.24 4.80 30.60 0.15 -2.09 16 5 C 0.13 3.34 5.40 86.38 0.47 3.80 16 6 N -0.72 -23.38 5.50 -466.17 -2.57 -25.95 16 7 C 0.57 24.24 7.76 86.73 0.67 24.91 16 8 O -0.61 -29.30 16.32 -3.95 -0.06 -29.37 16 9 C -0.29 -13.41 5.89 -19.93 -0.12 -13.53 16 10 C -0.05 -2.35 9.47 22.25 0.21 -2.14 16 11 C -0.20 -9.66 8.62 22.47 0.19 -9.46 16 12 C 0.10 5.28 5.56 -21.28 -0.12 5.16 16 13 C -0.47 -24.03 9.05 23.46 0.21 -23.81 16 14 H 0.08 4.11 7.90 -2.91 -0.02 4.09 16 15 C 0.04 1.71 5.16 85.35 0.44 2.15 16 16 N -0.80 -38.33 10.95 21.87 0.24 -38.09 16 17 Si 0.99 34.87 29.59 68.60 2.03 36.90 16 18 H -0.26 -8.81 7.11 99.48 0.71 -8.11 16 19 H -0.27 -8.86 7.11 99.48 0.71 -8.16 16 20 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 21 C -0.25 -12.59 9.73 22.47 0.22 -12.37 16 22 C -0.03 -1.67 9.52 22.25 0.21 -1.46 16 23 N -0.55 -9.31 4.89 -923.25 -4.51 -13.82 16 24 C 0.02 0.28 9.20 127.69 1.17 1.45 16 25 C 0.02 0.26 8.96 127.69 1.14 1.40 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 1.11 6.57 -2.39 -0.02 1.09 16 28 H 0.07 0.99 6.32 -2.38 -0.02 0.98 16 29 H 0.08 1.45 6.46 -2.39 -0.02 1.44 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.69 6.59 -2.39 -0.02 1.68 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 11.38 6.47 -92.71 -0.60 10.78 16 34 H 0.12 4.41 6.37 -2.91 -0.02 4.39 16 35 H 0.11 5.70 6.21 -2.91 -0.02 5.68 16 36 H 0.30 12.61 8.29 -92.70 -0.77 11.84 16 37 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 39 H 0.03 0.38 8.06 -2.38 -0.02 0.36 16 40 H 0.08 0.96 7.99 -2.39 -0.02 0.94 16 41 H 0.07 1.07 6.69 -2.39 -0.02 1.05 16 42 H 0.08 0.97 6.20 -2.39 -0.01 0.95 16 43 H 0.08 0.86 8.04 -2.39 -0.02 0.85 16 44 H 0.03 0.33 8.14 -2.38 -0.02 0.31 16 Total: -1.00 -61.21 352.75 1.09 -60.13 By element: Atomic # 1 Polarization: 36.08 SS G_CDS: 0.40 Total: 36.48 kcal Atomic # 6 Polarization: -31.84 SS G_CDS: 5.56 Total: -26.28 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -6.84 Total: -77.86 kcal Atomic # 8 Polarization: -29.30 SS G_CDS: -0.06 Total: -29.37 kcal Atomic # 14 Polarization: 34.87 SS G_CDS: 2.03 Total: 36.90 kcal Total: -61.21 1.09 -60.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597993332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.218 kcal (2) G-P(sol) polarization free energy of solvation -61.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds