Wall clock time and date at job start Tue Mar 31 2020 08:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47523 * 2 1 4 4 C 1.53005 * 109.47269 * 120.00009 * 2 1 3 5 5 C 1.53001 * 109.46912 * 297.03761 * 4 2 1 6 6 N 1.46494 * 109.47104 * 181.39318 * 5 4 2 7 7 C 1.34776 * 120.00182 * 180.02562 * 6 5 4 8 8 O 1.21588 * 120.00003 * 359.97438 * 7 6 5 9 9 C 1.47642 * 120.00186 * 179.72532 * 7 6 5 10 10 C 1.40015 * 119.89373 * 359.97438 * 9 7 6 11 11 C 1.36321 * 120.10410 * 179.75893 * 10 9 7 12 12 C 1.40885 * 119.89166 * 0.53993 * 11 10 9 13 13 C 1.41105 * 120.10439 * 179.69448 * 12 11 10 14 14 H 1.08004 * 120.00061 * 207.70483 * 13 12 11 15 15 C 1.40230 * 120.00076 * 27.70483 * 13 12 11 16 16 N 1.30645 * 119.99810 * 13.75098 * 15 13 12 17 17 Si 1.86798 * 119.99966 * 193.75036 * 15 13 12 18 18 H 1.48498 * 109.47018 * 90.00226 * 17 15 13 19 19 H 1.48505 * 109.46944 * 209.99928 * 17 15 13 20 20 H 1.48501 * 109.47418 * 329.99855 * 17 15 13 21 21 C 1.40891 * 119.79558 * 359.71601 * 12 11 10 22 22 C 1.36324 * 119.89112 * 359.97438 * 21 12 11 23 23 N 1.46900 * 109.47074 * 239.99941 * 2 1 3 24 24 C 1.46897 * 111.00135 * 60.59460 * 23 2 1 25 25 C 1.46909 * 111.00074 * 184.55134 * 23 2 1 26 26 H 1.08996 * 109.47070 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47261 * 300.00347 * 1 2 3 28 28 H 1.08996 * 109.47295 * 60.00160 * 1 2 3 29 29 H 1.09000 * 109.47074 * 177.04059 * 4 2 1 30 30 H 1.08994 * 109.46877 * 57.03915 * 4 2 1 31 31 H 1.09002 * 109.46795 * 61.39124 * 5 4 2 32 32 H 1.08999 * 109.47595 * 301.39479 * 5 4 2 33 33 H 0.97003 * 120.00196 * 0.02562 * 6 5 4 34 34 H 1.07991 * 119.94651 * 0.02562 * 10 9 7 35 35 H 1.07995 * 120.05472 * 180.23927 * 11 10 9 36 36 H 0.97000 * 120.00253 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.05773 * 179.97438 * 21 12 11 38 38 H 1.07994 * 119.94410 * 180.02562 * 22 21 12 39 39 H 1.08999 * 109.47149 * 60.00099 * 24 23 2 40 40 H 1.08998 * 109.47379 * 179.97438 * 24 23 2 41 41 H 1.08990 * 109.47178 * 300.00181 * 24 23 2 42 42 H 1.09004 * 109.46876 * 66.79131 * 25 23 2 43 43 H 1.08997 * 109.47115 * 186.79016 * 25 23 2 44 44 H 1.09004 * 109.46837 * 306.79300 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5918 0.0418 2.4974 6 7 2.1081 -0.6303 3.6923 7 6 1.8371 -0.1330 4.9153 8 8 1.1644 0.8736 5.0269 9 6 2.3524 -0.8138 6.1198 10 6 3.1220 -1.9761 5.9890 11 6 3.6040 -2.6054 7.0981 12 6 3.3172 -2.0907 8.3778 13 6 3.8085 -2.7421 9.5290 14 1 3.2739 -2.6625 10.4641 15 6 4.9909 -3.4927 9.4591 16 7 5.7776 -3.3772 8.4225 17 14 5.4411 -4.6578 10.8481 18 1 4.8667 -5.9995 10.5745 19 1 6.9191 -4.7628 10.9466 20 1 4.8955 -4.1372 12.1274 21 6 2.5379 -0.9238 8.5045 22 6 2.0654 -0.2979 7.3894 23 7 2.0196 -0.6925 -1.1994 24 6 1.5602 -0.0183 -2.4210 25 6 3.4841 -0.8071 -1.1802 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1287 -0.7674 1.2231 30 1 1.6340 -1.7324 1.2762 31 1 0.5027 0.0666 2.5364 32 1 1.9772 1.0606 2.4584 33 1 2.6451 -1.4332 3.6033 34 1 3.3376 -2.3723 5.0078 35 1 4.2008 -3.4997 6.9961 36 1 6.5957 -3.8961 8.3743 37 1 2.3150 -0.5259 9.4835 38 1 1.4683 0.5968 7.4856 39 1 1.9325 1.0061 -2.4325 40 1 1.9373 -0.5512 -3.2939 41 1 0.4706 -0.0091 -2.4431 42 1 3.7860 -1.4710 -0.3701 43 1 3.8292 -1.2137 -2.1308 44 1 3.9236 0.1783 -1.0254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597993333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:54 Heat of formation + Delta-G solvation = -26.846075 kcal Electronic energy + Delta-G solvation = -22257.127339 eV Core-core repulsion = 18980.525907 eV Total energy + Delta-G solvation = -3276.601432 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.26670 -38.48664 -37.09529 -34.81601 -33.83575 -32.27475 -30.27561 -29.45453 -29.11224 -27.27070 -25.79451 -24.78680 -22.88043 -21.66329 -20.87629 -20.25053 -19.39841 -17.51742 -16.89378 -16.28120 -15.65974 -15.50224 -15.05400 -14.94242 -14.76259 -14.01554 -13.93401 -13.72684 -13.22085 -13.08694 -12.76847 -12.68123 -12.54014 -12.15293 -12.01142 -11.94909 -11.84771 -11.72758 -11.40991 -11.30728 -11.27823 -11.03451 -10.93731 -10.75964 -10.60766 -10.01126 -9.54110 -9.39951 -8.96858 -8.62158 -8.55113 -7.71823 -7.50633 -6.99201 -4.60477 2.22973 2.93072 2.96393 2.99212 3.03041 3.55000 3.75629 3.88897 3.89929 4.58712 4.69948 4.73234 4.88426 5.05049 5.12831 5.23167 5.27225 5.30913 5.43862 5.53290 5.56337 5.57997 5.64029 5.73914 5.77666 5.93911 5.97887 6.04704 6.17694 6.23455 6.31833 6.76886 6.77576 6.79979 6.84689 6.95143 7.06539 7.13646 7.44747 7.65011 7.79032 7.86565 8.08275 8.24792 8.41146 8.64279 8.75474 9.08202 9.93084 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.002753 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.298016 B =10166.996797 C =11051.936428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.085 3.915 3 H 0.043 0.957 4 C -0.128 4.128 5 C 0.125 3.875 6 N -0.742 5.742 7 C 0.571 3.429 8 O -0.576 6.576 9 C -0.280 4.280 10 C -0.064 4.064 11 C -0.174 4.174 12 C 0.129 3.871 13 C -0.445 4.445 14 H 0.084 0.916 15 C 0.073 3.927 16 N -0.778 5.778 17 Si 0.915 3.085 18 H -0.265 1.265 19 H -0.275 1.275 20 H -0.260 1.260 21 C -0.236 4.236 22 C -0.024 4.024 23 N -0.543 5.543 24 C 0.021 3.979 25 C 0.019 3.981 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.397 0.603 34 H 0.089 0.911 35 H 0.121 0.879 36 H 0.286 0.714 37 H 0.098 0.902 38 H 0.101 0.899 39 H 0.024 0.976 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.065 0.935 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.604 0.879 -15.471 15.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.024 4.024 3 H 0.061 0.939 4 C -0.166 4.166 5 C 0.000 4.000 6 N -0.395 5.395 7 C 0.366 3.634 8 O -0.458 6.458 9 C -0.285 4.285 10 C -0.084 4.084 11 C -0.193 4.193 12 C 0.126 3.874 13 C -0.473 4.473 14 H 0.102 0.898 15 C -0.148 4.148 16 N -0.402 5.402 17 Si 0.739 3.261 18 H -0.190 1.190 19 H -0.200 1.200 20 H -0.183 1.183 21 C -0.256 4.256 22 C -0.043 4.043 23 N -0.267 5.267 24 C -0.127 4.127 25 C -0.129 4.129 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.232 0.768 34 H 0.107 0.893 35 H 0.139 0.861 36 H 0.097 0.903 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.042 0.958 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -3.040 1.047 -15.506 15.836 hybrid contribution 1.063 -0.074 0.398 1.137 sum -1.977 0.973 -15.108 15.268 Atomic orbital electron populations 1.21970 0.93999 1.02871 1.01961 1.21571 0.96022 0.95405 0.89381 0.93884 1.21893 1.01529 1.00464 0.92690 1.21186 0.99103 0.96049 0.83672 1.45892 1.56774 1.31313 1.05523 1.18591 0.78540 0.83272 0.83042 1.90630 1.41438 1.26638 1.87132 1.18935 1.14696 1.03033 0.91825 1.20490 0.96270 0.94453 0.97141 1.20995 1.04603 1.01920 0.91770 1.17805 0.87678 0.88768 0.93189 1.19833 1.05912 1.24522 0.97043 0.89778 1.26079 0.95682 0.95820 0.97170 1.69723 1.09558 1.32521 1.28415 0.86183 0.78188 0.80474 0.81244 1.18999 1.20047 1.18341 1.20761 1.09229 0.98927 0.96648 1.20376 0.95387 0.97050 0.91536 1.62032 1.10814 1.51831 1.02070 1.22431 1.01472 0.96501 0.92267 1.22456 0.87233 1.00428 1.02751 0.91579 0.91465 0.92635 0.91087 0.90316 0.91736 0.92384 0.76768 0.89287 0.86131 0.90330 0.88337 0.88082 0.95782 0.91497 0.90976 0.90765 0.91568 0.95538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 8.69 37.15 0.32 -1.07 16 2 C 0.08 0.84 2.15 -67.71 -0.15 0.70 16 3 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -1.38 4.54 -26.73 -0.12 -1.51 16 5 C 0.12 1.74 5.35 -4.04 -0.02 1.72 16 6 N -0.74 -12.46 5.50 -61.32 -0.34 -12.80 16 7 C 0.57 12.27 7.76 -12.42 -0.10 12.17 16 8 O -0.58 -13.89 16.32 5.29 0.09 -13.80 16 9 C -0.28 -6.44 5.89 -104.73 -0.62 -7.06 16 10 C -0.06 -1.43 9.47 -39.61 -0.38 -1.80 16 11 C -0.17 -4.25 8.61 -39.27 -0.34 -4.59 16 12 C 0.13 3.29 5.55 -106.80 -0.59 2.70 16 13 C -0.44 -11.10 9.05 -37.75 -0.34 -11.44 16 14 H 0.08 2.01 7.89 -52.48 -0.41 1.59 16 15 C 0.07 1.70 5.20 -17.31 -0.09 1.61 16 16 N -0.78 -18.73 10.92 55.56 0.61 -18.12 16 17 Si 0.92 17.39 29.58 -169.99 -5.03 12.36 16 18 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 19 H -0.28 -5.13 7.11 56.52 0.40 -4.73 16 20 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 21 C -0.24 -5.74 9.73 -39.27 -0.38 -6.13 16 22 C -0.02 -0.58 9.52 -39.61 -0.38 -0.95 16 23 N -0.54 -5.14 4.89 -243.17 -1.19 -6.33 16 24 C 0.02 0.17 9.21 60.06 0.55 0.72 16 25 C 0.02 0.17 8.92 60.07 0.54 0.70 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.65 6.53 -51.93 -0.34 0.31 16 28 H 0.05 0.45 6.42 -51.93 -0.33 0.12 16 29 H 0.07 0.75 6.32 -51.93 -0.33 0.42 16 30 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 0.93 6.57 -51.93 -0.34 0.59 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.40 5.95 6.47 -40.82 -0.26 5.69 16 34 H 0.09 1.66 6.37 -52.49 -0.33 1.33 16 35 H 0.12 2.99 6.23 -52.49 -0.33 2.66 16 36 H 0.29 6.19 8.29 -40.82 -0.34 5.85 16 37 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 38 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 39 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 41 H 0.07 0.53 6.32 -51.93 -0.33 0.20 16 42 H 0.07 0.64 6.58 -51.93 -0.34 0.30 16 43 H 0.07 0.49 8.00 -51.93 -0.42 0.08 16 44 H 0.03 0.23 8.11 -51.93 -0.42 -0.20 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -28.53 352.75 -9.31 -37.84 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.68 Total: 9.77 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: -2.09 Total: -14.23 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: -0.92 Total: -37.25 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 14 Polarization: 17.39 SS G_CDS: -5.03 Total: 12.36 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -28.53 -9.31 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597993333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.994 kcal (2) G-P(sol) polarization free energy of solvation -28.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds