Wall clock time and date at job start Tue Mar 31 2020 08:08:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47523 * 2 1 4 4 C 1.53005 * 109.47269 * 120.00009 * 2 1 3 5 5 C 1.53001 * 109.46912 * 297.03761 * 4 2 1 6 6 N 1.46494 * 109.47104 * 181.39318 * 5 4 2 7 7 C 1.34776 * 120.00182 * 180.02562 * 6 5 4 8 8 O 1.21588 * 120.00003 * 359.97438 * 7 6 5 9 9 C 1.47642 * 120.00186 * 179.72532 * 7 6 5 10 10 C 1.40015 * 119.89373 * 359.97438 * 9 7 6 11 11 C 1.36321 * 120.10410 * 179.75893 * 10 9 7 12 12 C 1.40885 * 119.89166 * 0.53993 * 11 10 9 13 13 C 1.41105 * 120.10439 * 179.69448 * 12 11 10 14 14 H 1.08004 * 120.00061 * 207.70483 * 13 12 11 15 15 C 1.40230 * 120.00076 * 27.70483 * 13 12 11 16 16 N 1.30645 * 119.99810 * 13.75098 * 15 13 12 17 17 Si 1.86798 * 119.99966 * 193.75036 * 15 13 12 18 18 H 1.48498 * 109.47018 * 90.00226 * 17 15 13 19 19 H 1.48505 * 109.46944 * 209.99928 * 17 15 13 20 20 H 1.48501 * 109.47418 * 329.99855 * 17 15 13 21 21 C 1.40891 * 119.79558 * 359.71601 * 12 11 10 22 22 C 1.36324 * 119.89112 * 359.97438 * 21 12 11 23 23 N 1.46900 * 109.47074 * 239.99941 * 2 1 3 24 24 C 1.46897 * 111.00135 * 60.59460 * 23 2 1 25 25 C 1.46909 * 111.00074 * 184.55134 * 23 2 1 26 26 H 1.08996 * 109.47070 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47261 * 300.00347 * 1 2 3 28 28 H 1.08996 * 109.47295 * 60.00160 * 1 2 3 29 29 H 1.09000 * 109.47074 * 177.04059 * 4 2 1 30 30 H 1.08994 * 109.46877 * 57.03915 * 4 2 1 31 31 H 1.09002 * 109.46795 * 61.39124 * 5 4 2 32 32 H 1.08999 * 109.47595 * 301.39479 * 5 4 2 33 33 H 0.97003 * 120.00196 * 0.02562 * 6 5 4 34 34 H 1.07991 * 119.94651 * 0.02562 * 10 9 7 35 35 H 1.07995 * 120.05472 * 180.23927 * 11 10 9 36 36 H 0.97000 * 120.00253 * 179.97438 * 16 15 13 37 37 H 1.07998 * 120.05773 * 179.97438 * 21 12 11 38 38 H 1.07994 * 119.94410 * 180.02562 * 22 21 12 39 39 H 1.08999 * 109.47149 * 60.00099 * 24 23 2 40 40 H 1.08998 * 109.47379 * 179.97438 * 24 23 2 41 41 H 1.08990 * 109.47178 * 300.00181 * 24 23 2 42 42 H 1.09004 * 109.46876 * 66.79131 * 25 23 2 43 43 H 1.08997 * 109.47115 * 186.79016 * 25 23 2 44 44 H 1.09004 * 109.46837 * 306.79300 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.5918 0.0418 2.4974 6 7 2.1081 -0.6303 3.6923 7 6 1.8371 -0.1330 4.9153 8 8 1.1644 0.8736 5.0269 9 6 2.3524 -0.8138 6.1198 10 6 3.1220 -1.9761 5.9890 11 6 3.6040 -2.6054 7.0981 12 6 3.3172 -2.0907 8.3778 13 6 3.8085 -2.7421 9.5290 14 1 3.2739 -2.6625 10.4641 15 6 4.9909 -3.4927 9.4591 16 7 5.7776 -3.3772 8.4225 17 14 5.4411 -4.6578 10.8481 18 1 4.8667 -5.9995 10.5745 19 1 6.9191 -4.7628 10.9466 20 1 4.8955 -4.1372 12.1274 21 6 2.5379 -0.9238 8.5045 22 6 2.0654 -0.2979 7.3894 23 7 2.0196 -0.6925 -1.1994 24 6 1.5602 -0.0183 -2.4210 25 6 3.4841 -0.8071 -1.1802 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 3.1287 -0.7674 1.2231 30 1 1.6340 -1.7324 1.2762 31 1 0.5027 0.0666 2.5364 32 1 1.9772 1.0606 2.4584 33 1 2.6451 -1.4332 3.6033 34 1 3.3376 -2.3723 5.0078 35 1 4.2008 -3.4997 6.9961 36 1 6.5957 -3.8961 8.3743 37 1 2.3150 -0.5259 9.4835 38 1 1.4683 0.5968 7.4856 39 1 1.9325 1.0061 -2.4325 40 1 1.9373 -0.5512 -3.2939 41 1 0.4706 -0.0091 -2.4431 42 1 3.7860 -1.4710 -0.3701 43 1 3.8292 -1.2137 -2.1308 44 1 3.9236 0.1783 -1.0254 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597993333.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:52 Heat of formation + Delta-G solvation = -44.026219 kcal Electronic energy + Delta-G solvation = -22257.872326 eV Core-core repulsion = 18980.525907 eV Total energy + Delta-G solvation = -3277.346419 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.86 seconds Orbital eigenvalues (eV) -40.82813 -39.45767 -38.81993 -36.12811 -35.64023 -33.39829 -31.92957 -31.30229 -30.03916 -28.33813 -27.29518 -25.64304 -24.09110 -23.21380 -22.66485 -21.46734 -20.67154 -19.35481 -18.44285 -17.46384 -17.11671 -16.65593 -16.34680 -15.82694 -15.77693 -15.68130 -15.27714 -15.02518 -14.98330 -14.42461 -14.15986 -13.88310 -13.64990 -13.49813 -13.23112 -13.21447 -12.85890 -12.78155 -12.72828 -12.65906 -12.54866 -12.36640 -12.13927 -11.87658 -11.74483 -11.56112 -11.35922 -11.15578 -10.71606 -10.05969 -9.57221 -9.37047 -9.29936 -8.75478 -6.48772 0.43221 1.14444 1.40031 1.43893 1.53913 2.13229 2.18852 2.34785 2.80204 2.98652 3.68386 3.87186 3.89904 4.01615 4.27434 4.31630 4.33105 4.36690 4.43591 4.44585 4.50884 4.59890 4.70098 4.74552 4.87686 4.92433 4.93008 4.99753 5.03928 5.05589 5.09625 5.15506 5.21096 5.30234 5.37328 5.55982 5.60894 5.81752 5.94310 5.99847 6.08780 6.11644 6.23627 6.54946 6.70722 6.78382 6.89033 7.43286 8.19756 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.025651 B = 0.002753 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.298016 B =10166.996797 C =11051.936428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.087 3.913 3 H 0.039 0.961 4 C -0.115 4.115 5 C 0.125 3.875 6 N -0.725 5.725 7 C 0.570 3.430 8 O -0.606 6.606 9 C -0.290 4.290 10 C -0.054 4.054 11 C -0.193 4.193 12 C 0.101 3.899 13 C -0.476 4.476 14 H 0.084 0.916 15 C 0.036 3.964 16 N -0.804 5.804 17 Si 0.989 3.011 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.259 1.259 21 C -0.250 4.250 22 C -0.035 4.035 23 N -0.552 5.552 24 C 0.020 3.980 25 C 0.018 3.982 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.077 0.923 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.408 0.592 34 H 0.125 0.875 35 H 0.115 0.885 36 H 0.296 0.704 37 H 0.104 0.896 38 H 0.103 0.897 39 H 0.024 0.976 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.068 -0.148 -16.726 16.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 H 0.057 0.943 4 C -0.153 4.153 5 C 0.001 3.999 6 N -0.377 5.377 7 C 0.363 3.637 8 O -0.491 6.491 9 C -0.294 4.294 10 C -0.073 4.073 11 C -0.212 4.212 12 C 0.098 3.902 13 C -0.503 4.503 14 H 0.102 0.898 15 C -0.182 4.182 16 N -0.428 5.428 17 Si 0.809 3.191 18 H -0.183 1.183 19 H -0.190 1.190 20 H -0.182 1.182 21 C -0.270 4.270 22 C -0.055 4.055 23 N -0.277 5.277 24 C -0.128 4.128 25 C -0.130 4.130 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.245 0.755 34 H 0.143 0.857 35 H 0.133 0.867 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.043 0.957 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.096 0.904 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.497 0.012 -16.811 16.996 hybrid contribution 0.882 0.300 0.678 1.152 sum -1.615 0.312 -16.133 16.217 Atomic orbital electron populations 1.21943 0.93598 1.02782 1.02235 1.21512 0.96339 0.95057 0.89293 0.94285 1.21783 1.01899 1.00120 0.91522 1.21331 0.98910 0.96010 0.83626 1.45764 1.55696 1.31215 1.04984 1.18416 0.78362 0.82887 0.83993 1.90612 1.42862 1.27915 1.87728 1.19218 1.14515 1.03311 0.92355 1.20746 0.94769 0.93597 0.98225 1.21033 1.05649 1.02308 0.92245 1.18162 0.88431 0.89415 0.94172 1.20091 1.07088 1.26090 0.97054 0.89768 1.26907 0.94887 0.96689 0.99738 1.69746 1.10073 1.33026 1.29984 0.85086 0.78209 0.78051 0.77759 1.18303 1.19012 1.18234 1.20899 1.09705 0.99102 0.97250 1.20529 0.95593 0.97248 0.92095 1.62046 1.11343 1.52016 1.02291 1.22486 1.01814 0.96574 0.91878 1.22496 0.86782 1.00363 1.03390 0.91798 0.92158 0.91455 0.90430 0.89975 0.91974 0.93011 0.75497 0.85709 0.86749 0.89312 0.87744 0.87899 0.95704 0.90448 0.90537 0.90950 0.90406 0.95718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.69 71.98 0.63 -1.89 16 2 C 0.09 1.57 2.15 44.91 0.10 1.66 16 3 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 4 C -0.12 -2.27 4.54 30.60 0.14 -2.13 16 5 C 0.13 3.32 5.35 86.38 0.46 3.78 16 6 N -0.72 -23.21 5.50 -466.17 -2.57 -25.77 16 7 C 0.57 24.12 7.76 86.73 0.67 24.80 16 8 O -0.61 -29.17 16.32 -3.99 -0.07 -29.24 16 9 C -0.29 -13.25 5.89 -19.93 -0.12 -13.37 16 10 C -0.05 -2.37 9.47 22.25 0.21 -2.16 16 11 C -0.19 -9.52 8.61 22.47 0.19 -9.33 16 12 C 0.10 5.28 5.55 -21.28 -0.12 5.16 16 13 C -0.48 -24.10 9.05 23.46 0.21 -23.88 16 14 H 0.08 4.10 7.89 -2.91 -0.02 4.08 16 15 C 0.04 1.67 5.20 85.35 0.44 2.11 16 16 N -0.80 -38.55 10.92 21.87 0.24 -38.31 16 17 Si 0.99 34.99 29.58 68.60 2.03 37.02 16 18 H -0.26 -8.84 7.11 99.48 0.71 -8.13 16 19 H -0.27 -8.92 7.11 99.48 0.71 -8.21 16 20 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 21 C -0.25 -12.48 9.73 22.47 0.22 -12.26 16 22 C -0.04 -1.71 9.52 22.25 0.21 -1.50 16 23 N -0.55 -9.29 4.89 -923.27 -4.51 -13.80 16 24 C 0.02 0.27 9.21 127.69 1.18 1.45 16 25 C 0.02 0.27 8.92 127.69 1.14 1.41 16 26 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.10 6.53 -2.38 -0.02 1.08 16 28 H 0.07 0.97 6.42 -2.39 -0.02 0.96 16 29 H 0.08 1.45 6.32 -2.39 -0.02 1.44 16 30 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.72 6.57 -2.39 -0.02 1.71 16 32 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.41 11.27 6.47 -92.71 -0.60 10.67 16 34 H 0.13 4.39 6.37 -2.92 -0.02 4.38 16 35 H 0.11 5.72 6.23 -2.91 -0.02 5.70 16 36 H 0.30 12.61 8.29 -92.71 -0.77 11.84 16 37 H 0.10 4.90 8.06 -2.91 -0.02 4.87 16 38 H 0.10 4.84 7.63 -2.91 -0.02 4.82 16 39 H 0.02 0.33 8.14 -2.39 -0.02 0.31 16 40 H 0.08 0.87 8.05 -2.39 -0.02 0.86 16 41 H 0.08 0.95 6.32 -2.39 -0.02 0.93 16 42 H 0.07 1.10 6.58 -2.38 -0.02 1.09 16 43 H 0.08 0.98 8.00 -2.39 -0.02 0.96 16 44 H 0.02 0.38 8.11 -2.39 -0.02 0.36 16 Total: -1.00 -61.13 352.75 1.09 -60.03 By element: Atomic # 1 Polarization: 35.83 SS G_CDS: 0.40 Total: 36.23 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 5.57 Total: -26.15 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -6.84 Total: -77.89 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.07 Total: -29.24 kcal Atomic # 14 Polarization: 34.99 SS G_CDS: 2.03 Total: 37.02 kcal Total: -61.13 1.09 -60.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597993333.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.007 kcal (2) G-P(sol) polarization free energy of solvation -61.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.86 seconds