Wall clock time and date at job start Tue Mar 31 2020 08:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47087 * 2 1 4 4 C 1.52999 * 109.47249 * 240.00218 * 2 1 3 5 5 C 1.53005 * 109.47085 * 175.00041 * 4 2 1 6 6 N 1.46900 * 109.47049 * 179.97438 * 5 4 2 7 7 C 1.46897 * 111.00228 * 169.99642 * 6 5 4 8 8 C 1.46906 * 110.99978 * 293.95390 * 6 5 4 9 9 N 1.46494 * 109.47109 * 119.99702 * 2 1 3 10 10 C 1.34776 * 120.00009 * 274.99992 * 9 2 1 11 11 O 1.21609 * 120.00181 * 0.02562 * 10 9 2 12 12 C 1.47435 * 119.99851 * 180.02562 * 10 9 2 13 13 C 1.39235 * 120.28378 * 356.68142 * 12 10 9 14 14 C 1.38221 * 120.09235 * 180.27761 * 13 12 10 15 15 C 1.38826 * 120.67558 * 359.70483 * 14 13 12 16 16 C 1.37601 * 120.57272 * 359.97438 * 15 14 13 17 17 C 1.40712 * 119.87956 * 0.02809 * 16 15 14 18 18 C 1.40891 * 120.32826 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99945 * 145.79815 * 18 17 16 20 20 C 1.40273 * 119.99861 * 325.79750 * 18 17 16 21 21 N 1.30635 * 120.00253 * 340.73952 * 20 18 17 22 22 Si 1.86797 * 120.00163 * 160.74414 * 20 18 17 23 23 H 1.48501 * 109.47362 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47173 * 300.00153 * 22 20 18 25 25 H 1.48501 * 109.46947 * 59.99624 * 22 20 18 26 26 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47196 * 300.00092 * 1 2 3 28 28 H 1.09008 * 109.47312 * 59.99999 * 1 2 3 29 29 H 1.08998 * 109.46854 * 294.99713 * 4 2 1 30 30 H 1.08998 * 109.47345 * 54.99583 * 4 2 1 31 31 H 1.08998 * 109.47007 * 299.99579 * 5 4 2 32 32 H 1.08999 * 109.46883 * 59.99512 * 5 4 2 33 33 H 1.08999 * 109.46624 * 59.99691 * 7 6 5 34 34 H 1.08996 * 109.47349 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46973 * 300.00840 * 7 6 5 36 36 H 1.09006 * 109.46903 * 60.00157 * 8 6 5 37 37 H 1.08998 * 109.46864 * 179.97438 * 8 6 5 38 38 H 1.08993 * 109.46619 * 300.00333 * 8 6 5 39 39 H 0.96994 * 119.99831 * 95.00064 * 9 2 1 40 40 H 1.07998 * 119.95320 * 0.02562 * 13 12 10 41 41 H 1.07993 * 119.66410 * 179.72150 * 14 13 12 42 42 H 1.08002 * 119.71786 * 180.02562 * 15 14 13 43 43 H 1.07990 * 120.06274 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99603 * 354.84132 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 7 4.0546 -1.3062 -2.5128 7 6 5.4790 -1.0262 -2.7378 8 6 3.8101 -2.7519 -2.4221 9 7 2.0183 -0.6905 1.1962 10 6 2.1470 -0.0181 2.3571 11 8 1.8574 1.1617 2.4118 12 6 2.6390 -0.7130 3.5608 13 6 2.9068 -2.0788 3.5229 14 6 3.3624 -2.7274 4.6552 15 6 3.5644 -2.0295 5.8382 16 6 3.3148 -0.6779 5.9048 17 6 2.8503 0.0061 4.7663 18 6 2.5912 1.3898 4.8240 19 1 2.7754 2.0101 3.9594 20 6 2.0940 1.9615 6.0045 21 7 1.5217 1.2076 6.9048 22 14 2.2500 3.8011 6.2891 23 1 1.6503 4.1516 7.6016 24 1 3.6850 4.1831 6.2821 25 1 1.5383 4.5311 5.2093 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.7517 -1.7714 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9994 -1.0727 -0.4259 33 1 6.0562 -1.3656 -1.8777 34 1 5.8156 -1.5510 -3.6318 35 1 5.6219 0.0462 -2.8709 36 1 2.7397 -2.9340 -2.3258 37 1 4.1819 -3.2404 -3.3228 38 1 4.3269 -3.1537 -1.5506 39 1 2.2490 -1.6316 1.1526 40 1 2.7544 -2.6330 2.6085 41 1 3.5637 -3.7878 4.6193 42 1 3.9212 -2.5517 6.7137 43 1 3.4752 -0.1431 6.8292 44 1 1.3733 0.2659 6.7256 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601166798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:34 Heat of formation + Delta-G solvation = -27.204110 kcal Electronic energy + Delta-G solvation = -23395.081177 eV Core-core repulsion = 20118.464220 eV Total energy + Delta-G solvation = -3276.616957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.14 seconds Orbital eigenvalues (eV) -39.28804 -37.93978 -36.99159 -35.14095 -33.94400 -31.51259 -29.85412 -29.36358 -28.78683 -27.73983 -25.28661 -24.62293 -22.74701 -21.40383 -21.01159 -20.35480 -19.53323 -18.04561 -16.49924 -16.03699 -15.45513 -15.16698 -14.94895 -14.66660 -14.26443 -14.05544 -13.81848 -13.62454 -13.36661 -12.99868 -12.72302 -12.50132 -12.41396 -12.27446 -11.92376 -11.88304 -11.82653 -11.61655 -11.17889 -11.10923 -10.91226 -10.83819 -10.74952 -10.58009 -10.36610 -10.15165 -9.61083 -9.07617 -8.56279 -8.49375 -8.32519 -7.79837 -7.60927 -7.14505 -4.46405 2.24156 2.73037 3.20431 3.30838 3.40918 3.80145 3.94006 4.04187 4.07980 4.63953 4.80313 4.96612 5.08844 5.16150 5.23562 5.34305 5.45813 5.48397 5.55406 5.63820 5.70555 5.72951 5.75727 5.83702 5.84805 5.97225 5.99856 6.09931 6.13414 6.30465 6.48348 6.54850 6.70908 6.86837 6.87914 6.98612 7.18068 7.27876 7.48635 7.60831 7.71506 7.88660 8.09060 8.21092 8.39551 8.73169 8.85941 9.38725 10.04091 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.004432 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.119907 B = 6315.929483 C = 7054.766265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.146 3.854 3 H 0.084 0.916 4 C -0.120 4.120 5 C 0.053 3.947 6 N -0.549 5.549 7 C 0.024 3.976 8 C 0.020 3.980 9 N -0.744 5.744 10 C 0.564 3.436 11 O -0.537 6.537 12 C -0.265 4.265 13 C -0.044 4.044 14 C -0.260 4.260 15 C -0.076 4.076 16 C -0.201 4.201 17 C 0.121 3.879 18 C -0.466 4.466 19 H 0.105 0.895 20 C 0.031 3.969 21 N -0.794 5.794 22 Si 1.070 2.930 23 H -0.275 1.275 24 H -0.274 1.274 25 H -0.273 1.273 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.041 0.959 33 H 0.026 0.974 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.026 0.974 39 H 0.388 0.612 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.106 0.894 44 H 0.298 0.702 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 -5.085 -13.426 14.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.040 3.960 3 H 0.102 0.898 4 C -0.158 4.158 5 C -0.075 4.075 6 N -0.273 5.273 7 C -0.125 4.125 8 C -0.128 4.128 9 N -0.398 5.398 10 C 0.358 3.642 11 O -0.415 6.415 12 C -0.270 4.270 13 C -0.063 4.063 14 C -0.280 4.280 15 C -0.095 4.095 16 C -0.220 4.220 17 C 0.116 3.884 18 C -0.493 4.493 19 H 0.123 0.877 20 C -0.190 4.190 21 N -0.417 5.417 22 Si 0.893 3.107 23 H -0.199 1.199 24 H -0.200 1.200 25 H -0.198 1.198 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.044 0.956 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.222 0.778 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.124 0.876 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.869 -2.851 -12.648 13.099 hybrid contribution 0.860 -2.366 -0.419 2.552 sum 2.728 -5.217 -13.067 14.332 Atomic orbital electron populations 1.22157 0.95857 1.01606 1.02256 1.20733 0.93639 0.97584 0.84000 0.89800 1.21880 0.94899 1.01115 0.97904 1.22180 0.95555 0.99317 0.90425 1.62035 1.17231 1.09451 1.38571 1.22372 0.87700 1.02033 1.00372 1.22443 1.02027 0.87894 1.00477 1.46118 1.70517 1.13498 1.09681 1.18352 0.76935 0.86397 0.82490 1.90673 1.50700 1.15877 1.84266 1.19432 1.18514 0.92989 0.96102 1.20703 0.95938 0.93446 0.96176 1.20231 1.15317 0.98086 0.94354 1.20737 0.98063 0.94445 0.96237 1.21254 1.07191 0.94163 0.99420 1.17504 0.88216 0.92941 0.89722 1.21170 1.33708 0.93454 1.00937 0.87704 1.27264 0.92129 1.08466 0.91174 1.70392 1.25808 1.10707 1.34780 0.83563 0.77852 0.72074 0.77188 1.19944 1.19975 1.19777 0.92992 0.91772 0.92336 0.91683 0.90030 0.90672 0.94118 0.95572 0.91551 0.91355 0.91085 0.91669 0.95535 0.77763 0.89290 0.88993 0.88926 0.87567 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.26 9.48 37.16 0.35 -1.91 16 2 C 0.15 2.16 2.57 -67.94 -0.17 1.98 16 3 H 0.08 1.41 7.58 -51.92 -0.39 1.02 16 4 C -0.12 -1.38 4.68 -26.73 -0.13 -1.50 16 5 C 0.05 0.64 4.85 -3.82 -0.02 0.62 16 6 N -0.55 -6.03 5.02 -251.26 -1.26 -7.30 16 7 C 0.02 0.23 9.57 60.06 0.57 0.80 16 8 C 0.02 0.19 9.32 60.07 0.56 0.75 16 9 N -0.74 -12.84 4.48 -54.88 -0.25 -13.08 16 10 C 0.56 12.86 7.69 -12.52 -0.10 12.77 16 11 O -0.54 -13.99 13.22 5.27 0.07 -13.92 16 12 C -0.27 -6.42 5.92 -104.36 -0.62 -7.04 16 13 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 14 C -0.26 -5.46 10.03 -39.37 -0.39 -5.85 16 15 C -0.08 -1.68 10.01 -39.60 -0.40 -2.08 16 16 C -0.20 -5.02 7.87 -38.88 -0.31 -5.32 16 17 C 0.12 3.21 5.17 -106.54 -0.55 2.65 16 18 C -0.47 -12.79 7.65 -37.81 -0.29 -13.08 16 19 H 0.11 3.00 5.93 -52.49 -0.31 2.69 16 20 C 0.03 0.81 5.04 -17.30 -0.09 0.73 16 21 N -0.79 -21.32 12.57 55.56 0.70 -20.62 16 22 Si 1.07 22.58 29.98 -169.99 -5.10 17.48 16 23 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 24 H -0.27 -5.51 7.11 56.52 0.40 -5.10 16 25 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 28 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 29 H 0.06 0.70 6.55 -51.93 -0.34 0.36 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 32 H 0.04 0.55 7.73 -51.93 -0.40 0.15 16 33 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.55 8.12 -51.93 -0.42 0.13 16 35 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.07 0.64 6.47 -51.93 -0.34 0.30 16 37 H 0.06 0.54 8.12 -51.93 -0.42 0.11 16 38 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.39 5.92 6.64 -40.82 -0.27 5.65 16 40 H 0.09 1.55 6.41 -52.49 -0.34 1.21 16 41 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 43 H 0.11 2.70 6.94 -52.49 -0.36 2.34 16 44 H 0.30 8.19 6.55 -40.82 -0.27 7.93 16 LS Contribution 354.18 15.07 5.34 5.34 Total: -1.00 -29.56 354.18 -9.32 -38.89 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -6.88 Total: 10.97 kcal Atomic # 6 Polarization: -15.82 SS G_CDS: -1.94 Total: -17.77 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: -0.81 Total: -41.00 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.07 Total: -13.92 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.10 Total: 17.48 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.56 -9.32 -38.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601166798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.685 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.14 seconds