Wall clock time and date at job start Tue Mar 31 2020 08:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09009 * 109.47087 * 2 1 4 4 C 1.52999 * 109.47249 * 240.00218 * 2 1 3 5 5 C 1.53005 * 109.47085 * 175.00041 * 4 2 1 6 6 N 1.46900 * 109.47049 * 179.97438 * 5 4 2 7 7 C 1.46897 * 111.00228 * 169.99642 * 6 5 4 8 8 C 1.46906 * 110.99978 * 293.95390 * 6 5 4 9 9 N 1.46494 * 109.47109 * 119.99702 * 2 1 3 10 10 C 1.34776 * 120.00009 * 274.99992 * 9 2 1 11 11 O 1.21609 * 120.00181 * 0.02562 * 10 9 2 12 12 C 1.47435 * 119.99851 * 180.02562 * 10 9 2 13 13 C 1.39235 * 120.28378 * 356.68142 * 12 10 9 14 14 C 1.38221 * 120.09235 * 180.27761 * 13 12 10 15 15 C 1.38826 * 120.67558 * 359.70483 * 14 13 12 16 16 C 1.37601 * 120.57272 * 359.97438 * 15 14 13 17 17 C 1.40712 * 119.87956 * 0.02809 * 16 15 14 18 18 C 1.40891 * 120.32826 * 179.97438 * 17 16 15 19 19 H 1.07992 * 119.99945 * 145.79815 * 18 17 16 20 20 C 1.40273 * 119.99861 * 325.79750 * 18 17 16 21 21 N 1.30635 * 120.00253 * 340.73952 * 20 18 17 22 22 Si 1.86797 * 120.00163 * 160.74414 * 20 18 17 23 23 H 1.48501 * 109.47362 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47173 * 300.00153 * 22 20 18 25 25 H 1.48501 * 109.46947 * 59.99624 * 22 20 18 26 26 H 1.08998 * 109.47506 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47196 * 300.00092 * 1 2 3 28 28 H 1.09008 * 109.47312 * 59.99999 * 1 2 3 29 29 H 1.08998 * 109.46854 * 294.99713 * 4 2 1 30 30 H 1.08998 * 109.47345 * 54.99583 * 4 2 1 31 31 H 1.08998 * 109.47007 * 299.99579 * 5 4 2 32 32 H 1.08999 * 109.46883 * 59.99512 * 5 4 2 33 33 H 1.08999 * 109.46624 * 59.99691 * 7 6 5 34 34 H 1.08996 * 109.47349 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.46973 * 300.00840 * 7 6 5 36 36 H 1.09006 * 109.46903 * 60.00157 * 8 6 5 37 37 H 1.08998 * 109.46864 * 179.97438 * 8 6 5 38 38 H 1.08993 * 109.46619 * 300.00333 * 8 6 5 39 39 H 0.96994 * 119.99831 * 95.00064 * 9 2 1 40 40 H 1.07998 * 119.95320 * 0.02562 * 13 12 10 41 41 H 1.07993 * 119.66410 * 179.72150 * 14 13 12 42 42 H 1.08002 * 119.71786 * 180.02562 * 15 14 13 43 43 H 1.07990 * 120.06274 * 180.02562 * 16 15 14 44 44 H 0.97001 * 119.99603 * 354.84132 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 7 4.0546 -1.3062 -2.5128 7 6 5.4790 -1.0262 -2.7378 8 6 3.8101 -2.7519 -2.4221 9 7 2.0183 -0.6905 1.1962 10 6 2.1470 -0.0181 2.3571 11 8 1.8574 1.1617 2.4118 12 6 2.6390 -0.7130 3.5608 13 6 2.9068 -2.0788 3.5229 14 6 3.3624 -2.7274 4.6552 15 6 3.5644 -2.0295 5.8382 16 6 3.3148 -0.6779 5.9048 17 6 2.8503 0.0061 4.7663 18 6 2.5912 1.3898 4.8240 19 1 2.7754 2.0101 3.9594 20 6 2.0940 1.9615 6.0045 21 7 1.5217 1.2076 6.9048 22 14 2.2500 3.8011 6.2891 23 1 1.6503 4.1516 7.6016 24 1 3.6850 4.1831 6.2821 25 1 1.5383 4.5311 5.2093 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.7517 -1.7714 -1.2056 30 1 1.6054 -0.2617 -2.1370 31 1 3.8532 0.4370 -1.3573 32 1 3.9994 -1.0727 -0.4259 33 1 6.0562 -1.3656 -1.8777 34 1 5.8156 -1.5510 -3.6318 35 1 5.6219 0.0462 -2.8709 36 1 2.7397 -2.9340 -2.3258 37 1 4.1819 -3.2404 -3.3228 38 1 4.3269 -3.1537 -1.5506 39 1 2.2490 -1.6316 1.1526 40 1 2.7544 -2.6330 2.6085 41 1 3.5637 -3.7878 4.6193 42 1 3.9212 -2.5517 6.7137 43 1 3.4752 -0.1431 6.8292 44 1 1.3733 0.2659 6.7256 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601166798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:08:33 Heat of formation + Delta-G solvation = -45.847604 kcal Electronic energy + Delta-G solvation = -23395.889620 eV Core-core repulsion = 20118.464220 eV Total energy + Delta-G solvation = -3277.425400 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.94841 -39.24264 -38.45266 -36.57691 -35.78772 -33.05712 -31.56276 -30.99648 -30.04420 -28.48282 -27.15851 -25.64211 -24.40305 -22.95320 -22.29586 -21.62116 -21.21306 -19.90328 -18.16133 -17.32315 -16.57976 -16.35640 -16.28424 -16.03471 -15.88706 -15.64472 -15.39456 -15.29072 -14.68271 -14.29584 -14.12884 -14.00932 -13.79184 -13.51544 -13.24991 -13.04409 -12.87196 -12.71697 -12.68102 -12.58174 -12.50156 -12.19559 -12.02762 -11.96227 -11.88414 -11.62808 -11.44975 -10.96705 -10.33085 -9.97107 -9.61748 -9.50053 -9.35113 -9.10082 -6.46574 0.40394 0.89623 1.45608 1.60944 1.75722 2.27354 2.30488 2.45863 2.74476 2.94508 3.55897 3.81434 4.00719 4.10955 4.20564 4.25319 4.30355 4.37699 4.44279 4.47385 4.54462 4.64610 4.70469 4.71611 4.75798 4.81324 4.86545 4.94799 4.97414 5.02894 5.10237 5.14965 5.20333 5.30763 5.42301 5.63342 5.68363 5.73463 5.89674 5.96810 6.01204 6.07557 6.20059 6.32822 6.70050 6.85958 6.94060 7.65497 8.03975 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.016388 B = 0.004432 C = 0.003968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.119907 B = 6315.929483 C = 7054.766265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.144 3.856 3 H 0.058 0.942 4 C -0.103 4.103 5 C 0.056 3.944 6 N -0.554 5.554 7 C 0.022 3.978 8 C 0.018 3.982 9 N -0.721 5.721 10 C 0.559 3.441 11 O -0.578 6.578 12 C -0.283 4.283 13 C -0.042 4.042 14 C -0.245 4.245 15 C -0.073 4.073 16 C -0.226 4.226 17 C 0.096 3.904 18 C -0.510 4.510 19 H 0.080 0.920 20 C -0.002 4.002 21 N -0.818 5.818 22 Si 1.115 2.885 23 H -0.264 1.264 24 H -0.259 1.259 25 H -0.272 1.272 26 H 0.069 0.931 27 H 0.025 0.975 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.025 0.975 33 H 0.019 0.981 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.022 0.978 39 H 0.402 0.598 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.124 0.876 43 H 0.088 0.912 44 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.998 -7.738 -15.496 17.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.039 3.961 3 H 0.076 0.924 4 C -0.141 4.141 5 C -0.072 4.072 6 N -0.278 5.278 7 C -0.127 4.127 8 C -0.130 4.130 9 N -0.375 5.375 10 C 0.352 3.648 11 O -0.460 6.460 12 C -0.288 4.288 13 C -0.061 4.061 14 C -0.264 4.264 15 C -0.091 4.091 16 C -0.245 4.245 17 C 0.092 3.908 18 C -0.538 4.538 19 H 0.098 0.902 20 C -0.218 4.218 21 N -0.442 5.442 22 Si 0.932 3.068 23 H -0.188 1.188 24 H -0.184 1.184 25 H -0.197 1.197 26 H 0.088 0.912 27 H 0.044 0.956 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.116 0.884 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.041 0.959 39 H 0.238 0.762 40 H 0.151 0.849 41 H 0.153 0.847 42 H 0.142 0.858 43 H 0.107 0.893 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.212 -5.563 -14.759 15.927 hybrid contribution 0.822 -1.812 0.033 1.990 sum 3.034 -7.375 -14.725 16.746 Atomic orbital electron populations 1.22100 0.94919 1.02574 1.01699 1.20909 0.94326 0.96619 0.84250 0.92410 1.21751 0.94331 1.01790 0.96261 1.22087 0.95937 0.98706 0.90508 1.62059 1.17870 1.10418 1.37441 1.22430 0.87071 1.02286 1.00866 1.22528 1.02617 0.86822 1.01072 1.45885 1.68901 1.13898 1.08838 1.18375 0.76720 0.85996 0.83689 1.90656 1.52422 1.17739 1.85151 1.19868 1.18201 0.94719 0.96028 1.21129 0.94531 0.92156 0.98248 1.20798 1.12282 1.00069 0.93239 1.21149 0.96501 0.93344 0.98138 1.21210 1.09081 0.95675 0.98581 1.17899 0.88230 0.93285 0.91400 1.21089 1.37409 0.94337 1.00998 0.90169 1.28450 0.90852 1.11782 0.90669 1.70503 1.28269 1.09960 1.35464 0.83033 0.78700 0.67679 0.77360 1.18824 1.18387 1.19692 0.91177 0.95610 0.89648 0.89754 0.88397 0.91972 0.95708 0.96198 0.89818 0.91487 0.90268 0.90236 0.95923 0.76151 0.84948 0.84659 0.85836 0.89339 0.90561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.48 71.98 0.68 -3.46 16 2 C 0.14 4.10 2.57 44.99 0.12 4.22 16 3 H 0.06 1.98 7.58 -2.38 -0.02 1.96 16 4 C -0.10 -2.10 4.68 30.60 0.14 -1.95 16 5 C 0.06 1.26 4.85 86.30 0.42 1.68 16 6 N -0.55 -10.79 5.02 -948.84 -4.76 -15.55 16 7 C 0.02 0.38 9.57 127.69 1.22 1.60 16 8 C 0.02 0.27 9.32 127.69 1.19 1.47 16 9 N -0.72 -24.15 4.48 -445.79 -2.00 -26.14 16 10 C 0.56 26.00 7.69 86.67 0.67 26.66 16 11 O -0.58 -31.78 13.22 -4.06 -0.05 -31.83 16 12 C -0.28 -13.77 5.92 -19.70 -0.12 -13.89 16 13 C -0.04 -1.65 9.53 22.51 0.21 -1.43 16 14 C -0.24 -9.31 10.03 22.41 0.22 -9.08 16 15 C -0.07 -3.09 10.01 22.26 0.22 -2.86 16 16 C -0.23 -11.55 7.87 22.72 0.18 -11.37 16 17 C 0.10 5.29 5.17 -21.11 -0.11 5.18 16 18 C -0.51 -29.84 7.65 23.41 0.18 -29.66 16 19 H 0.08 4.96 5.93 -2.91 -0.02 4.95 16 20 C 0.00 -0.13 5.04 85.37 0.43 0.30 16 21 N -0.82 -46.27 12.57 21.88 0.28 -46.00 16 22 Si 1.11 47.75 29.98 68.60 2.06 49.81 16 23 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 24 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.08 1.44 6.55 -2.39 -0.02 1.42 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.55 8.06 -2.39 -0.02 1.53 16 32 H 0.02 0.63 7.73 -2.39 -0.02 0.61 16 33 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.08 1.17 8.12 -2.39 -0.02 1.15 16 35 H 0.07 1.17 8.12 -2.39 -0.02 1.15 16 36 H 0.08 1.11 6.47 -2.38 -0.02 1.09 16 37 H 0.08 1.03 8.12 -2.39 -0.02 1.01 16 38 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.40 11.11 6.64 -92.71 -0.62 10.50 16 40 H 0.13 3.98 6.41 -2.91 -0.02 3.96 16 41 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 42 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 43 H 0.09 4.74 6.94 -2.92 -0.02 4.72 16 44 H 0.28 16.44 6.55 -92.71 -0.61 15.84 16 Total: -1.00 -69.35 354.18 1.72 -67.64 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: 0.53 Total: 34.68 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 5.66 Total: -32.60 kcal Atomic # 7 Polarization: -81.21 SS G_CDS: -6.48 Total: -87.69 kcal Atomic # 8 Polarization: -31.78 SS G_CDS: -0.05 Total: -31.83 kcal Atomic # 14 Polarization: 47.75 SS G_CDS: 2.06 Total: 49.81 kcal Total: -69.35 1.72 -67.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601166798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.790 kcal (2) G-P(sol) polarization free energy of solvation -69.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds