Wall clock time and date at job start Tue Mar 31 2020 08:40:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47268 * 2 1 4 4 C 1.52997 * 109.47016 * 239.99804 * 2 1 3 5 5 N 1.46501 * 109.47364 * 64.99999 * 4 2 1 6 6 C 1.34775 * 120.00214 * 179.97438 * 5 4 2 7 7 O 1.21613 * 119.99618 * 0.02562 * 6 5 4 8 8 C 1.47427 * 120.00064 * 179.97438 * 6 5 4 9 9 C 1.39223 * 120.28257 * 355.62066 * 8 6 5 10 10 C 1.38227 * 120.08969 * 180.02562 * 9 8 6 11 11 C 1.38823 * 120.67453 * 359.94891 * 10 9 8 12 12 C 1.37589 * 120.57515 * 0.02668 * 11 10 9 13 13 C 1.40704 * 119.88110 * 359.97438 * 12 11 10 14 14 C 1.40890 * 120.33026 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00336 * 216.15232 * 14 13 12 16 16 C 1.40271 * 120.00116 * 36.14951 * 14 13 12 17 17 N 1.30634 * 119.99714 * 9.56707 * 16 14 13 18 18 Si 1.86795 * 120.00275 * 189.56107 * 16 14 13 19 19 H 1.48492 * 109.47142 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.47122 * 120.00282 * 18 16 14 21 21 H 1.48500 * 109.47471 * 239.99870 * 18 16 14 22 22 C 1.53002 * 109.47088 * 119.99936 * 2 1 3 23 23 N 1.46899 * 109.47001 * 186.16466 * 22 2 1 24 24 C 1.46902 * 111.00306 * 73.82209 * 23 22 2 25 25 C 1.46905 * 110.99755 * 197.77564 * 23 22 2 26 26 H 1.09002 * 109.46980 * 184.51567 * 1 2 3 27 27 H 1.09001 * 109.47602 * 304.51376 * 1 2 3 28 28 H 1.08998 * 109.47375 * 64.51893 * 1 2 3 29 29 H 1.08997 * 109.47439 * 304.99847 * 4 2 1 30 30 H 1.09008 * 109.47209 * 185.00019 * 4 2 1 31 31 H 0.97001 * 119.99838 * 0.02562 * 5 4 2 32 32 H 1.07994 * 119.95614 * 0.02562 * 9 8 6 33 33 H 1.07999 * 119.65513 * 179.97438 * 10 9 8 34 34 H 1.08009 * 119.71172 * 180.02562 * 11 10 9 35 35 H 1.08005 * 120.06033 * 179.72345 * 12 11 10 36 36 H 0.97005 * 119.99796 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46768 * 306.16308 * 22 2 1 38 38 H 1.08993 * 109.47285 * 66.15993 * 22 2 1 39 39 H 1.08998 * 109.47040 * 62.86924 * 24 23 22 40 40 H 1.08995 * 109.47169 * 182.86867 * 24 23 22 41 41 H 1.08993 * 109.46851 * 302.86719 * 24 23 22 42 42 H 1.08996 * 109.47231 * 59.99935 * 25 23 22 43 43 H 1.09004 * 109.47017 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.47409 * 299.99743 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6524 0.0352 -2.4424 6 6 1.9964 -0.4132 -3.6659 7 8 2.6281 -1.4462 -3.7794 8 6 1.6058 0.3478 -4.8667 9 6 0.8049 1.4806 -4.7502 10 6 0.4407 2.1909 -5.8787 11 6 0.8666 1.7881 -7.1371 12 6 1.6593 0.6732 -7.2840 13 6 2.0442 -0.0675 -6.1513 14 6 2.8553 -1.2111 -6.2909 15 1 2.7001 -2.0650 -5.6481 16 6 3.8643 -1.2406 -7.2648 17 7 4.1778 -0.1510 -7.9137 18 14 4.7600 -2.8378 -7.6337 19 1 4.2215 -3.9183 -6.7691 20 1 4.5596 -3.1996 -9.0601 21 1 6.2104 -2.6654 -7.3659 22 6 2.0400 -0.7212 1.2493 23 7 3.5014 -0.5938 1.3259 24 6 3.8912 0.7652 1.7251 25 6 4.0699 -1.5942 2.2392 26 1 -0.3633 -1.0245 0.0809 27 1 -0.3634 0.5823 0.8468 28 1 -0.3634 0.4421 -0.9277 29 1 1.6054 -1.7198 -1.2951 30 1 3.1263 -0.7995 -1.2056 31 1 1.1488 0.8593 -2.3518 32 1 0.4676 1.8048 -3.7768 33 1 -0.1812 3.0683 -5.7803 34 1 0.5731 2.3549 -8.0084 35 1 1.9822 0.3647 -8.2674 36 1 4.8754 -0.1715 -8.5875 37 1 1.5893 -0.2750 2.1358 38 1 1.7695 -1.7757 1.1959 39 1 3.5117 0.9729 2.7256 40 1 4.9781 0.8463 1.7247 41 1 3.4729 1.4846 1.0212 42 1 3.8246 -2.5940 1.8812 43 1 5.1530 -1.4777 2.2770 44 1 3.6540 -1.4533 3.2369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601588852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:00 Heat of formation + Delta-G solvation = -20.197812 kcal Electronic energy + Delta-G solvation = -23123.391958 eV Core-core repulsion = 19847.078817 eV Total energy + Delta-G solvation = -3276.313141 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.85 seconds Orbital eigenvalues (eV) -39.05484 -38.07989 -36.68829 -35.00168 -33.65326 -32.16968 -29.89653 -29.44455 -27.73886 -27.06782 -26.06651 -24.99225 -22.47626 -21.82111 -20.79969 -20.06827 -19.15988 -17.46339 -16.30480 -15.98290 -15.55626 -15.19374 -14.96926 -14.65757 -14.35710 -14.16285 -13.82058 -13.29203 -13.16353 -12.81418 -12.69343 -12.63157 -12.52394 -12.15442 -11.96983 -11.84189 -11.80242 -11.52166 -11.09395 -11.07371 -11.02076 -10.79964 -10.58636 -10.53898 -10.44025 -10.02545 -9.60446 -9.20933 -8.48742 -8.27418 -8.16026 -7.53084 -7.27038 -6.73651 -4.32387 2.42896 2.85099 3.15522 3.25370 3.27175 3.80457 4.04542 4.09605 4.27759 4.75512 4.78224 4.88615 5.00491 5.16575 5.17851 5.31572 5.39146 5.45793 5.54488 5.62701 5.67316 5.73707 5.80222 5.85159 5.92057 6.03572 6.09440 6.17926 6.32391 6.38287 6.48623 6.71577 6.88852 6.90357 6.99770 7.16213 7.24869 7.36326 7.51611 7.67272 7.93164 8.05950 8.23854 8.50836 8.75505 8.89964 8.97932 9.55106 10.23014 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.004382 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.826419 B = 6388.455191 C = 7714.536690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.099 4.099 3 H 0.075 0.925 4 C 0.137 3.863 5 N -0.749 5.749 6 C 0.564 3.436 7 O -0.539 6.539 8 C -0.258 4.258 9 C -0.058 4.058 10 C -0.245 4.245 11 C -0.097 4.097 12 C -0.147 4.147 13 C 0.148 3.852 14 C -0.422 4.422 15 H 0.110 0.890 16 C 0.069 3.931 17 N -0.796 5.796 18 Si 0.915 3.085 19 H -0.257 1.257 20 H -0.274 1.274 21 H -0.274 1.274 22 C 0.063 3.937 23 N -0.545 5.545 24 C 0.023 3.977 25 C 0.026 3.974 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.073 0.927 31 H 0.388 0.612 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.280 0.720 37 H 0.037 0.963 38 H 0.076 0.924 39 H 0.022 0.978 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.301 1.351 15.171 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.118 4.118 3 H 0.093 0.907 4 C 0.013 3.987 5 N -0.404 5.404 6 C 0.357 3.643 7 O -0.418 6.418 8 C -0.263 4.263 9 C -0.077 4.077 10 C -0.265 4.265 11 C -0.115 4.115 12 C -0.166 4.166 13 C 0.143 3.857 14 C -0.451 4.451 15 H 0.128 0.872 16 C -0.149 4.149 17 N -0.421 5.421 18 Si 0.739 3.261 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.065 4.065 23 N -0.269 5.269 24 C -0.125 4.125 25 C -0.123 4.123 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.223 0.777 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.132 0.868 36 H 0.091 0.909 37 H 0.055 0.945 38 H 0.094 0.906 39 H 0.041 0.959 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -2.461 0.566 14.458 14.677 hybrid contribution -0.046 0.194 0.682 0.711 sum -2.507 0.759 15.141 15.366 Atomic orbital electron populations 1.21834 0.94750 1.02117 1.01881 1.21377 0.95500 1.00270 0.94674 0.90675 1.21090 1.00652 0.94308 0.82651 1.46037 1.60395 1.28064 1.05862 1.18365 0.78557 0.84853 0.82494 1.90653 1.40251 1.24752 1.86103 1.19530 1.13208 1.00781 0.92803 1.20643 0.96467 0.94300 0.96267 1.20276 1.09902 1.03185 0.93118 1.20782 0.98165 0.96814 0.95787 1.21309 0.99426 0.97082 0.98799 1.17492 0.88334 0.90913 0.88930 1.20314 1.10831 1.01579 1.12327 0.87209 1.26127 0.97376 0.97678 0.93674 1.69734 1.25400 1.28203 1.18773 0.86136 0.79124 0.82252 0.78557 1.17998 1.19961 1.19982 1.22140 0.86940 1.01039 0.96424 1.61902 1.10355 1.04273 1.50349 1.22430 1.01444 0.90175 0.98453 1.22381 1.00181 0.96113 0.93578 0.92439 0.92940 0.91917 0.92833 0.90840 0.77730 0.89349 0.89169 0.89145 0.86824 0.90889 0.94474 0.90572 0.95947 0.91398 0.91059 0.91217 0.91380 0.95985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.12 37.16 0.34 -1.17 16 2 C -0.10 -1.14 2.47 -90.62 -0.22 -1.37 16 3 H 0.07 0.86 6.60 -51.93 -0.34 0.52 16 4 C 0.14 2.18 5.01 -4.04 -0.02 2.16 16 5 N -0.75 -13.70 5.19 -61.38 -0.32 -14.02 16 6 C 0.56 13.44 7.72 -12.52 -0.10 13.34 16 7 O -0.54 -14.65 13.54 5.27 0.07 -14.58 16 8 C -0.26 -6.44 5.92 -104.37 -0.62 -7.06 16 9 C -0.06 -1.25 9.52 -39.22 -0.37 -1.63 16 10 C -0.25 -5.28 10.03 -39.37 -0.39 -5.68 16 11 C -0.10 -2.21 10.01 -39.60 -0.40 -2.61 16 12 C -0.15 -3.79 8.61 -38.89 -0.33 -4.13 16 13 C 0.15 4.03 5.47 -106.54 -0.58 3.45 16 14 C -0.42 -11.88 7.75 -37.81 -0.29 -12.17 16 15 H 0.11 3.22 5.78 -52.48 -0.30 2.92 16 16 C 0.07 1.82 5.24 -17.30 -0.09 1.73 16 17 N -0.80 -21.09 11.31 55.56 0.63 -20.46 16 18 Si 0.91 20.13 29.57 -169.99 -5.03 15.10 16 19 H -0.26 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 21 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 22 C 0.06 0.65 4.37 -3.82 -0.02 0.63 16 23 N -0.55 -6.08 4.39 -251.26 -1.10 -7.19 16 24 C 0.02 0.23 9.41 60.07 0.57 0.79 16 25 C 0.03 0.24 9.53 60.07 0.57 0.81 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.69 7.08 -51.93 -0.37 0.32 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.07 1.33 7.66 -51.92 -0.40 0.93 16 31 H 0.39 6.17 5.70 -40.82 -0.23 5.93 16 32 H 0.09 1.58 6.42 -52.49 -0.34 1.24 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 34 H 0.09 1.82 8.06 -52.48 -0.42 1.39 16 35 H 0.11 2.99 6.78 -52.48 -0.36 2.63 16 36 H 0.28 6.74 8.29 -40.82 -0.34 6.40 16 37 H 0.04 0.34 8.02 -51.93 -0.42 -0.07 16 38 H 0.08 0.78 7.92 -51.93 -0.41 0.37 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.71 6.60 -51.93 -0.34 0.37 16 42 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 353.53 15.07 5.33 5.33 Total: -1.00 -30.69 353.53 -9.25 -39.95 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.87 Total: 8.74 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -1.97 Total: -12.88 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: -0.79 Total: -41.66 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: 0.07 Total: -14.58 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.03 Total: 15.10 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.69 -9.25 -39.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.747 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.85 seconds