Wall clock time and date at job start Tue Mar 31 2020 08:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47268 * 2 1 4 4 C 1.52997 * 109.47016 * 239.99804 * 2 1 3 5 5 N 1.46501 * 109.47364 * 64.99999 * 4 2 1 6 6 C 1.34775 * 120.00214 * 179.97438 * 5 4 2 7 7 O 1.21613 * 119.99618 * 0.02562 * 6 5 4 8 8 C 1.47427 * 120.00064 * 179.97438 * 6 5 4 9 9 C 1.39223 * 120.28257 * 355.62066 * 8 6 5 10 10 C 1.38227 * 120.08969 * 180.02562 * 9 8 6 11 11 C 1.38823 * 120.67453 * 359.94891 * 10 9 8 12 12 C 1.37589 * 120.57515 * 0.02668 * 11 10 9 13 13 C 1.40704 * 119.88110 * 359.97438 * 12 11 10 14 14 C 1.40890 * 120.33026 * 179.97438 * 13 12 11 15 15 H 1.08004 * 120.00336 * 216.15232 * 14 13 12 16 16 C 1.40271 * 120.00116 * 36.14951 * 14 13 12 17 17 N 1.30634 * 119.99714 * 9.56707 * 16 14 13 18 18 Si 1.86795 * 120.00275 * 189.56107 * 16 14 13 19 19 H 1.48492 * 109.47142 * 0.02562 * 18 16 14 20 20 H 1.48511 * 109.47122 * 120.00282 * 18 16 14 21 21 H 1.48500 * 109.47471 * 239.99870 * 18 16 14 22 22 C 1.53002 * 109.47088 * 119.99936 * 2 1 3 23 23 N 1.46899 * 109.47001 * 186.16466 * 22 2 1 24 24 C 1.46902 * 111.00306 * 73.82209 * 23 22 2 25 25 C 1.46905 * 110.99755 * 197.77564 * 23 22 2 26 26 H 1.09002 * 109.46980 * 184.51567 * 1 2 3 27 27 H 1.09001 * 109.47602 * 304.51376 * 1 2 3 28 28 H 1.08998 * 109.47375 * 64.51893 * 1 2 3 29 29 H 1.08997 * 109.47439 * 304.99847 * 4 2 1 30 30 H 1.09008 * 109.47209 * 185.00019 * 4 2 1 31 31 H 0.97001 * 119.99838 * 0.02562 * 5 4 2 32 32 H 1.07994 * 119.95614 * 0.02562 * 9 8 6 33 33 H 1.07999 * 119.65513 * 179.97438 * 10 9 8 34 34 H 1.08009 * 119.71172 * 180.02562 * 11 10 9 35 35 H 1.08005 * 120.06033 * 179.72345 * 12 11 10 36 36 H 0.97005 * 119.99796 * 180.02562 * 17 16 14 37 37 H 1.08998 * 109.46768 * 306.16308 * 22 2 1 38 38 H 1.08993 * 109.47285 * 66.15993 * 22 2 1 39 39 H 1.08998 * 109.47040 * 62.86924 * 24 23 22 40 40 H 1.08995 * 109.47169 * 182.86867 * 24 23 22 41 41 H 1.08993 * 109.46851 * 302.86719 * 24 23 22 42 42 H 1.08996 * 109.47231 * 59.99935 * 25 23 22 43 43 H 1.09004 * 109.47017 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.47409 * 299.99743 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.6524 0.0352 -2.4424 6 6 1.9964 -0.4132 -3.6659 7 8 2.6281 -1.4462 -3.7794 8 6 1.6058 0.3478 -4.8667 9 6 0.8049 1.4806 -4.7502 10 6 0.4407 2.1909 -5.8787 11 6 0.8666 1.7881 -7.1371 12 6 1.6593 0.6732 -7.2840 13 6 2.0442 -0.0675 -6.1513 14 6 2.8553 -1.2111 -6.2909 15 1 2.7001 -2.0650 -5.6481 16 6 3.8643 -1.2406 -7.2648 17 7 4.1778 -0.1510 -7.9137 18 14 4.7600 -2.8378 -7.6337 19 1 4.2215 -3.9183 -6.7691 20 1 4.5596 -3.1996 -9.0601 21 1 6.2104 -2.6654 -7.3659 22 6 2.0400 -0.7212 1.2493 23 7 3.5014 -0.5938 1.3259 24 6 3.8912 0.7652 1.7251 25 6 4.0699 -1.5942 2.2392 26 1 -0.3633 -1.0245 0.0809 27 1 -0.3634 0.5823 0.8468 28 1 -0.3634 0.4421 -0.9277 29 1 1.6054 -1.7198 -1.2951 30 1 3.1263 -0.7995 -1.2056 31 1 1.1488 0.8593 -2.3518 32 1 0.4676 1.8048 -3.7768 33 1 -0.1812 3.0683 -5.7803 34 1 0.5731 2.3549 -8.0084 35 1 1.9822 0.3647 -8.2674 36 1 4.8754 -0.1715 -8.5875 37 1 1.5893 -0.2750 2.1358 38 1 1.7695 -1.7757 1.1959 39 1 3.5117 0.9729 2.7256 40 1 4.9781 0.8463 1.7247 41 1 3.4729 1.4846 1.0212 42 1 3.8246 -2.5940 1.8812 43 1 5.1530 -1.4777 2.2770 44 1 3.6540 -1.4533 3.2369 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601588852.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:39:52 Heat of formation + Delta-G solvation = -39.692977 kcal Electronic energy + Delta-G solvation = -23124.237332 eV Core-core repulsion = 19847.078817 eV Total energy + Delta-G solvation = -3277.158515 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 22.48 seconds Orbital eigenvalues (eV) -40.73675 -39.21098 -38.39389 -36.33554 -35.51605 -33.60396 -31.76532 -31.24103 -28.47213 -27.88565 -27.66076 -26.65536 -23.89043 -23.07928 -22.58768 -21.34372 -20.70426 -19.34472 -17.97941 -17.19026 -17.01475 -16.59431 -16.11668 -15.91042 -15.85709 -15.60159 -15.35527 -14.91486 -14.65438 -14.48048 -13.96872 -13.77872 -13.72836 -13.38155 -13.23238 -13.01029 -12.85814 -12.85410 -12.62690 -12.57356 -12.42409 -12.31004 -11.97575 -11.90990 -11.89442 -11.49920 -11.42785 -11.12037 -10.19253 -9.87196 -9.36922 -9.22697 -9.17413 -8.66030 -6.34761 0.54622 1.02358 1.33491 1.47770 1.49978 2.23052 2.39884 2.57349 2.82000 3.04387 3.73772 3.81213 3.98059 4.15814 4.29439 4.34881 4.41978 4.45704 4.53826 4.57914 4.61141 4.66533 4.76401 4.78814 4.84960 4.90634 5.02335 5.04089 5.06901 5.11105 5.12444 5.25699 5.31598 5.36267 5.40072 5.64025 5.76747 5.84449 6.07667 6.12840 6.13934 6.14136 6.37585 6.69072 6.84614 6.95384 7.06183 7.74166 8.32869 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.004382 C = 0.003629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.826419 B = 6388.455191 C = 7714.536690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 H 0.081 0.919 4 C 0.140 3.860 5 N -0.726 5.726 6 C 0.556 3.444 7 O -0.583 6.583 8 C -0.278 4.278 9 C -0.054 4.054 10 C -0.234 4.234 11 C -0.092 4.092 12 C -0.176 4.176 13 C 0.116 3.884 14 C -0.465 4.465 15 H 0.084 0.916 16 C 0.032 3.968 17 N -0.826 5.826 18 Si 0.977 3.023 19 H -0.271 1.271 20 H -0.253 1.253 21 H -0.267 1.267 22 C 0.066 3.934 23 N -0.573 5.573 24 C 0.024 3.976 25 C 0.027 3.973 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.049 0.951 31 H 0.404 0.596 32 H 0.133 0.867 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.096 0.904 36 H 0.288 0.712 37 H 0.058 0.942 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.737 3.205 16.908 17.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 H 0.099 0.901 4 C 0.016 3.984 5 N -0.380 5.380 6 C 0.349 3.651 7 O -0.464 6.464 8 C -0.283 4.283 9 C -0.073 4.073 10 C -0.253 4.253 11 C -0.111 4.111 12 C -0.195 4.195 13 C 0.113 3.887 14 C -0.494 4.494 15 H 0.102 0.898 16 C -0.182 4.182 17 N -0.452 5.452 18 Si 0.798 3.202 19 H -0.195 1.195 20 H -0.178 1.178 21 H -0.192 1.192 22 C -0.062 4.062 23 N -0.297 5.297 24 C -0.124 4.124 25 C -0.121 4.121 26 H 0.075 0.925 27 H 0.096 0.904 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.241 0.759 32 H 0.150 0.850 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.114 0.886 36 H 0.099 0.901 37 H 0.076 0.924 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.928 2.466 16.225 16.875 hybrid contribution 0.272 -0.237 0.264 0.447 sum -3.656 2.228 16.489 17.036 Atomic orbital electron populations 1.21820 0.93224 1.02580 1.02657 1.21305 0.96602 0.99951 0.92692 0.90053 1.21164 0.99268 0.94330 0.83596 1.45803 1.59012 1.28288 1.04906 1.18469 0.78299 0.84350 0.83946 1.90632 1.42247 1.26623 1.86943 1.19911 1.13736 1.02107 0.92568 1.21068 0.94861 0.92631 0.98705 1.20818 1.08636 1.03730 0.92099 1.21180 0.96428 0.95568 0.97926 1.21252 1.01588 0.98974 0.97731 1.17866 0.88872 0.91428 0.90561 1.20240 1.13255 1.01917 1.13983 0.89840 1.26781 0.97551 1.00700 0.93202 1.69752 1.26371 1.29488 1.19628 0.85238 0.77963 0.77966 0.78985 1.19483 1.17758 1.19187 1.22109 0.86783 1.00977 0.96350 1.61888 1.10942 1.05274 1.51597 1.22423 1.01486 0.89387 0.99087 1.22375 1.00313 0.95482 0.93957 0.92514 0.90428 0.92530 0.94038 0.93294 0.75933 0.84962 0.84767 0.86144 0.88582 0.90128 0.92352 0.90751 0.94449 0.91486 0.91494 0.91654 0.91239 0.94534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.12 71.98 0.66 -1.87 16 2 C -0.09 -1.81 2.47 -10.80 -0.03 -1.84 16 3 H 0.08 1.65 6.60 -2.39 -0.02 1.63 16 4 C 0.14 4.43 5.01 86.38 0.43 4.87 16 5 N -0.73 -26.05 5.19 -466.36 -2.42 -28.47 16 6 C 0.56 27.10 7.72 86.66 0.67 27.77 16 7 O -0.58 -33.36 13.54 -4.07 -0.06 -33.41 16 8 C -0.28 -13.97 5.92 -19.70 -0.12 -14.09 16 9 C -0.05 -2.19 9.52 22.50 0.21 -1.98 16 10 C -0.23 -9.17 10.03 22.41 0.22 -8.95 16 11 C -0.09 -4.06 10.01 22.26 0.22 -3.83 16 12 C -0.18 -9.27 8.61 22.72 0.20 -9.08 16 13 C 0.12 6.60 5.47 -21.11 -0.12 6.49 16 14 C -0.46 -27.74 7.75 23.41 0.18 -27.56 16 15 H 0.08 5.29 5.78 -2.91 -0.02 5.27 16 16 C 0.03 1.76 5.24 85.37 0.45 2.21 16 17 N -0.83 -45.44 11.31 21.88 0.25 -45.19 16 18 Si 0.98 43.17 29.57 68.60 2.03 45.19 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.63 16 22 C 0.07 1.23 4.37 86.30 0.38 1.61 16 23 N -0.57 -12.04 4.39 -948.86 -4.16 -16.20 16 24 C 0.02 0.43 9.41 127.69 1.20 1.63 16 25 C 0.03 0.46 9.53 127.69 1.22 1.68 16 26 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.06 7.08 -2.39 -0.02 1.04 16 29 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.05 1.81 7.66 -2.38 -0.02 1.80 16 31 H 0.40 11.82 5.70 -92.71 -0.53 11.29 16 32 H 0.13 4.10 6.42 -2.91 -0.02 4.09 16 33 H 0.13 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 35 H 0.10 5.28 6.78 -2.91 -0.02 5.26 16 36 H 0.29 14.28 8.29 -92.70 -0.77 13.51 16 37 H 0.06 0.87 8.02 -2.39 -0.02 0.85 16 38 H 0.07 1.41 7.92 -2.39 -0.02 1.39 16 39 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.22 6.60 -2.39 -0.02 1.20 16 42 H 0.06 1.17 8.08 -2.39 -0.02 1.15 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -70.98 353.53 1.88 -69.10 By element: Atomic # 1 Polarization: 31.46 SS G_CDS: 0.46 Total: 31.93 kcal Atomic # 6 Polarization: -28.72 SS G_CDS: 5.78 Total: -22.94 kcal Atomic # 7 Polarization: -83.53 SS G_CDS: -6.33 Total: -89.86 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.06 Total: -33.41 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.98 1.88 -69.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588852.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.403 kcal (2) G-P(sol) polarization free energy of solvation -70.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.48 seconds