Wall clock time and date at job start Tue Mar 31 2020 08:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46936 * 2 1 4 4 C 1.53000 * 109.47323 * 119.99999 * 2 1 3 5 5 N 1.46497 * 109.47087 * 294.99889 * 4 2 1 6 6 C 1.34774 * 120.00234 * 179.97438 * 5 4 2 7 7 O 1.21618 * 119.99610 * 359.97438 * 6 5 4 8 8 C 1.47428 * 120.00477 * 180.02562 * 6 5 4 9 9 C 1.39232 * 120.28208 * 357.04743 * 8 6 5 10 10 C 1.38215 * 120.09251 * 180.27997 * 9 8 6 11 11 C 1.38828 * 120.67982 * 359.72196 * 10 9 8 12 12 C 1.37601 * 120.56733 * 359.97438 * 11 10 9 13 13 C 1.40709 * 119.87976 * 0.02562 * 12 11 10 14 14 C 1.40893 * 120.32617 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00188 * 145.84834 * 14 13 12 16 16 C 1.40270 * 120.00050 * 325.84740 * 14 13 12 17 17 N 1.30634 * 119.99783 * 340.94671 * 16 14 13 18 18 Si 1.86802 * 120.00322 * 160.94603 * 16 14 13 19 19 H 1.48499 * 109.47415 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.46979 * 300.00024 * 18 16 14 21 21 H 1.48504 * 109.46955 * 59.99636 * 18 16 14 22 22 C 1.52998 * 109.46808 * 240.00092 * 2 1 3 23 23 N 1.46899 * 109.47493 * 64.99959 * 22 2 1 24 24 C 1.46910 * 110.99875 * 66.04168 * 23 22 2 25 25 C 1.46896 * 111.00581 * 189.99837 * 23 22 2 26 26 H 1.09006 * 109.46868 * 300.00054 * 1 2 3 27 27 H 1.08999 * 109.47550 * 59.99778 * 1 2 3 28 28 H 1.08991 * 109.47489 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47147 * 174.99743 * 4 2 1 30 30 H 1.09003 * 109.46728 * 54.99533 * 4 2 1 31 31 H 0.97004 * 120.00040 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.95353 * 0.02562 * 9 8 6 33 33 H 1.07997 * 119.66332 * 179.73917 * 10 9 8 34 34 H 1.07994 * 119.72068 * 180.02562 * 11 10 9 35 35 H 1.07999 * 120.05974 * 180.02562 * 12 11 10 36 36 H 0.96993 * 120.00120 * 354.75581 * 17 16 14 37 37 H 1.08998 * 109.47073 * 184.99674 * 22 2 1 38 38 H 1.08999 * 109.47250 * 305.00034 * 22 2 1 39 39 H 1.08998 * 109.46780 * 60.00637 * 24 23 22 40 40 H 1.08999 * 109.46681 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.46961 * 300.00420 * 24 23 22 42 42 H 1.08997 * 109.46851 * 59.99871 * 25 23 22 43 43 H 1.09001 * 109.47506 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.46902 * 300.00043 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0354 2.4423 6 6 1.9956 -0.4135 3.6659 7 8 2.6266 -1.4470 3.7795 8 6 1.6052 0.3475 4.8667 9 6 0.9355 1.5618 4.7413 10 6 0.5765 2.2749 5.8696 11 6 0.8713 1.7911 7.1370 12 6 1.5267 0.5912 7.2930 13 6 1.9032 -0.1543 6.1606 14 6 2.5741 -1.3842 6.3095 15 1 2.3943 -2.1858 5.6084 16 6 3.4757 -1.5677 7.3682 17 7 3.9795 -0.5316 7.9841 18 14 3.9561 -3.2935 7.8977 19 1 4.9151 -3.2155 9.0288 20 1 2.7432 -4.0352 8.3267 21 1 4.5921 -4.0019 6.7580 22 6 2.0399 -0.7212 -1.2493 23 7 1.6513 0.0374 -2.4457 24 6 2.3340 1.3375 -2.4895 25 6 1.9123 -0.7357 -3.6672 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1263 -0.7995 1.2055 30 1 1.6053 -1.7198 1.2951 31 1 1.1483 0.8591 2.3517 32 1 0.7000 1.9490 3.7611 33 1 0.0610 3.2180 5.7642 34 1 0.5832 2.3608 8.0080 35 1 1.7516 0.2224 8.2828 36 1 3.7905 0.3634 7.6616 37 1 3.1262 -0.7994 -1.2057 38 1 1.6052 -1.7198 -1.2952 39 1 3.4125 1.1809 -2.5100 40 1 2.0286 1.8781 -3.3853 41 1 2.0677 1.9176 -1.6059 42 1 1.3395 -1.6626 -3.6398 43 1 1.6151 -0.1510 -4.5378 44 1 2.9755 -0.9673 -3.7303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601588853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:19 Heat of formation + Delta-G solvation = -26.376251 kcal Electronic energy + Delta-G solvation = -22965.354890 eV Core-core repulsion = 19688.773831 eV Total energy + Delta-G solvation = -3276.581059 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.35 seconds Orbital eigenvalues (eV) -39.19830 -38.24024 -36.95331 -35.10653 -33.94446 -32.16197 -29.96085 -29.31619 -27.84354 -27.07496 -26.21827 -24.97674 -22.72816 -21.81437 -20.87233 -20.14062 -19.30906 -18.06003 -16.53829 -16.07546 -15.58803 -15.09986 -14.78920 -14.72543 -14.66430 -14.08869 -13.87933 -13.71512 -13.60353 -12.92230 -12.71085 -12.58499 -12.48371 -12.14282 -12.07924 -11.95855 -11.89338 -11.66855 -11.15118 -11.03762 -10.88304 -10.86919 -10.72746 -10.64262 -10.35495 -10.14650 -9.59693 -9.06588 -8.59003 -8.48663 -8.34941 -7.77581 -7.59231 -7.12975 -4.44816 2.25901 2.74967 3.21349 3.32143 3.42015 3.61540 4.05260 4.06652 4.09687 4.65170 4.70996 4.85916 4.94344 5.02486 5.12750 5.26249 5.32659 5.42003 5.47598 5.56693 5.58954 5.63054 5.73120 5.82893 5.89770 5.95376 6.05118 6.08083 6.17013 6.28467 6.34692 6.53488 6.72899 6.76931 6.78108 7.00396 7.15299 7.29435 7.50677 7.62435 7.73508 7.90432 8.10841 8.22817 8.40356 8.74923 8.87705 9.39067 10.05691 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.003715 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.214783 B = 7535.750643 C = 8652.238227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.075 0.925 4 C 0.131 3.869 5 N -0.746 5.746 6 C 0.563 3.437 7 O -0.539 6.539 8 C -0.265 4.265 9 C -0.043 4.043 10 C -0.260 4.260 11 C -0.076 4.076 12 C -0.201 4.201 13 C 0.121 3.879 14 C -0.467 4.467 15 H 0.105 0.895 16 C 0.031 3.969 17 N -0.795 5.795 18 Si 1.071 2.929 19 H -0.275 1.275 20 H -0.274 1.274 21 H -0.273 1.273 22 C 0.061 3.939 23 N -0.545 5.545 24 C 0.020 3.980 25 C 0.024 3.976 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.391 0.609 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.298 0.702 37 H 0.037 0.963 38 H 0.078 0.922 39 H 0.025 0.975 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 2.003 -15.845 16.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.119 4.119 3 H 0.093 0.907 4 C 0.006 3.994 5 N -0.402 5.402 6 C 0.356 3.644 7 O -0.417 6.417 8 C -0.270 4.270 9 C -0.062 4.062 10 C -0.279 4.279 11 C -0.095 4.095 12 C -0.220 4.220 13 C 0.116 3.884 14 C -0.494 4.494 15 H 0.123 0.877 16 C -0.191 4.191 17 N -0.418 5.418 18 Si 0.894 3.106 19 H -0.200 1.200 20 H -0.199 1.199 21 H -0.198 1.198 22 C -0.067 4.067 23 N -0.268 5.268 24 C -0.129 4.129 25 C -0.124 4.124 26 H 0.070 0.930 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.226 0.774 32 H 0.108 0.892 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.044 0.956 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -2.788 0.513 -14.604 14.877 hybrid contribution -0.289 1.401 -1.302 1.934 sum -3.077 1.914 -15.906 16.313 Atomic orbital electron populations 1.21716 0.94004 1.02039 1.01690 1.21379 0.97371 0.99998 0.93138 0.90667 1.21105 0.99313 0.95318 0.83687 1.45980 1.60445 1.28159 1.05569 1.18373 0.78671 0.84847 0.82462 1.90675 1.40345 1.24603 1.86082 1.19405 1.16593 0.98310 0.92659 1.20711 0.95374 0.93724 0.96410 1.20240 1.13047 1.01914 0.92721 1.20742 0.97266 0.95544 0.95928 1.21256 1.05368 0.97325 0.98096 1.17506 0.89860 0.91580 0.89433 1.21185 1.18767 0.99276 1.10137 0.87683 1.27270 0.93586 1.06255 0.91945 1.70386 1.33083 1.02017 1.36308 0.83557 0.77415 0.72501 0.77150 1.19957 1.19947 1.19813 1.22112 0.98122 0.97359 0.89128 1.61948 1.58234 1.04294 1.02343 1.22458 0.96127 0.91466 1.02810 1.22373 0.99165 0.98535 0.92314 0.93001 0.91626 0.92861 0.92482 0.92134 0.77447 0.89165 0.88913 0.88891 0.87533 0.88817 0.94468 0.90374 0.95643 0.91548 0.90910 0.91331 0.91461 0.95723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 8.95 37.16 0.33 -1.19 16 2 C -0.10 -1.14 2.34 -90.62 -0.21 -1.35 16 3 H 0.08 0.85 6.34 -51.93 -0.33 0.52 16 4 C 0.13 1.98 5.06 -4.04 -0.02 1.96 16 5 N -0.75 -13.29 5.23 -61.38 -0.32 -13.61 16 6 C 0.56 13.18 7.73 -12.52 -0.10 13.08 16 7 O -0.54 -14.42 13.55 5.26 0.07 -14.35 16 8 C -0.26 -6.49 5.92 -104.37 -0.62 -7.11 16 9 C -0.04 -0.92 9.53 -39.22 -0.37 -1.29 16 10 C -0.26 -5.47 10.03 -39.37 -0.39 -5.87 16 11 C -0.08 -1.69 10.01 -39.60 -0.40 -2.09 16 12 C -0.20 -5.06 7.86 -38.88 -0.31 -5.36 16 13 C 0.12 3.24 5.18 -106.54 -0.55 2.69 16 14 C -0.47 -12.97 7.66 -37.81 -0.29 -13.26 16 15 H 0.11 3.05 5.91 -52.49 -0.31 2.74 16 16 C 0.03 0.81 5.04 -17.30 -0.09 0.72 16 17 N -0.79 -21.47 12.57 55.56 0.70 -20.77 16 18 Si 1.07 22.73 29.98 -169.99 -5.10 17.64 16 19 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 20 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 22 C 0.06 0.63 4.35 -3.83 -0.02 0.62 16 23 N -0.54 -5.20 4.47 -251.26 -1.12 -6.33 16 24 C 0.02 0.17 9.33 60.07 0.56 0.73 16 25 C 0.02 0.19 9.57 60.06 0.57 0.77 16 26 H 0.05 0.60 7.18 -51.93 -0.37 0.22 16 27 H 0.06 0.70 7.75 -51.93 -0.40 0.29 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.39 6.07 5.69 -40.82 -0.23 5.84 16 32 H 0.09 1.58 6.41 -52.49 -0.34 1.24 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 35 H 0.11 2.73 6.93 -52.49 -0.36 2.36 16 36 H 0.30 8.23 6.54 -40.82 -0.27 7.97 16 37 H 0.04 0.40 8.12 -51.93 -0.42 -0.03 16 38 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 41 H 0.07 0.64 6.37 -51.93 -0.33 0.31 16 42 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 43 H 0.07 0.46 8.12 -51.93 -0.42 0.04 16 44 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 352.18 15.07 5.31 5.31 Total: -1.00 -30.15 352.18 -9.16 -39.31 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.81 Total: 9.76 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -1.90 Total: -16.95 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: -0.75 Total: -40.72 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: 0.07 Total: -14.35 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.10 Total: 17.64 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.15 -9.16 -39.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.934 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.35 seconds