Wall clock time and date at job start Tue Mar 31 2020 08:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46936 * 2 1 4 4 C 1.53000 * 109.47323 * 119.99999 * 2 1 3 5 5 N 1.46497 * 109.47087 * 294.99889 * 4 2 1 6 6 C 1.34774 * 120.00234 * 179.97438 * 5 4 2 7 7 O 1.21618 * 119.99610 * 359.97438 * 6 5 4 8 8 C 1.47428 * 120.00477 * 180.02562 * 6 5 4 9 9 C 1.39232 * 120.28208 * 357.04743 * 8 6 5 10 10 C 1.38215 * 120.09251 * 180.27997 * 9 8 6 11 11 C 1.38828 * 120.67982 * 359.72196 * 10 9 8 12 12 C 1.37601 * 120.56733 * 359.97438 * 11 10 9 13 13 C 1.40709 * 119.87976 * 0.02562 * 12 11 10 14 14 C 1.40893 * 120.32617 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00188 * 145.84834 * 14 13 12 16 16 C 1.40270 * 120.00050 * 325.84740 * 14 13 12 17 17 N 1.30634 * 119.99783 * 340.94671 * 16 14 13 18 18 Si 1.86802 * 120.00322 * 160.94603 * 16 14 13 19 19 H 1.48499 * 109.47415 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.46979 * 300.00024 * 18 16 14 21 21 H 1.48504 * 109.46955 * 59.99636 * 18 16 14 22 22 C 1.52998 * 109.46808 * 240.00092 * 2 1 3 23 23 N 1.46899 * 109.47493 * 64.99959 * 22 2 1 24 24 C 1.46910 * 110.99875 * 66.04168 * 23 22 2 25 25 C 1.46896 * 111.00581 * 189.99837 * 23 22 2 26 26 H 1.09006 * 109.46868 * 300.00054 * 1 2 3 27 27 H 1.08999 * 109.47550 * 59.99778 * 1 2 3 28 28 H 1.08991 * 109.47489 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47147 * 174.99743 * 4 2 1 30 30 H 1.09003 * 109.46728 * 54.99533 * 4 2 1 31 31 H 0.97004 * 120.00040 * 0.02562 * 5 4 2 32 32 H 1.07997 * 119.95353 * 0.02562 * 9 8 6 33 33 H 1.07997 * 119.66332 * 179.73917 * 10 9 8 34 34 H 1.07994 * 119.72068 * 180.02562 * 11 10 9 35 35 H 1.07999 * 120.05974 * 180.02562 * 12 11 10 36 36 H 0.96993 * 120.00120 * 354.75581 * 17 16 14 37 37 H 1.08998 * 109.47073 * 184.99674 * 22 2 1 38 38 H 1.08999 * 109.47250 * 305.00034 * 22 2 1 39 39 H 1.08998 * 109.46780 * 60.00637 * 24 23 22 40 40 H 1.08999 * 109.46681 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.46961 * 300.00420 * 24 23 22 42 42 H 1.08997 * 109.46851 * 59.99871 * 25 23 22 43 43 H 1.09001 * 109.47506 * 179.97438 * 25 23 22 44 44 H 1.09000 * 109.46902 * 300.00043 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6525 0.0354 2.4423 6 6 1.9956 -0.4135 3.6659 7 8 2.6266 -1.4470 3.7795 8 6 1.6052 0.3475 4.8667 9 6 0.9355 1.5618 4.7413 10 6 0.5765 2.2749 5.8696 11 6 0.8713 1.7911 7.1370 12 6 1.5267 0.5912 7.2930 13 6 1.9032 -0.1543 6.1606 14 6 2.5741 -1.3842 6.3095 15 1 2.3943 -2.1858 5.6084 16 6 3.4757 -1.5677 7.3682 17 7 3.9795 -0.5316 7.9841 18 14 3.9561 -3.2935 7.8977 19 1 4.9151 -3.2155 9.0288 20 1 2.7432 -4.0352 8.3267 21 1 4.5921 -4.0019 6.7580 22 6 2.0399 -0.7212 -1.2493 23 7 1.6513 0.0374 -2.4457 24 6 2.3340 1.3375 -2.4895 25 6 1.9123 -0.7357 -3.6672 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 3.1263 -0.7995 1.2055 30 1 1.6053 -1.7198 1.2951 31 1 1.1483 0.8591 2.3517 32 1 0.7000 1.9490 3.7611 33 1 0.0610 3.2180 5.7642 34 1 0.5832 2.3608 8.0080 35 1 1.7516 0.2224 8.2828 36 1 3.7905 0.3634 7.6616 37 1 3.1262 -0.7994 -1.2057 38 1 1.6052 -1.7198 -1.2952 39 1 3.4125 1.1809 -2.5100 40 1 2.0286 1.8781 -3.3853 41 1 2.0677 1.9176 -1.6059 42 1 1.3395 -1.6626 -3.6398 43 1 1.6151 -0.1510 -4.5378 44 1 2.9755 -0.9673 -3.7303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601588853.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:40:13 Heat of formation + Delta-G solvation = -45.270625 kcal Electronic energy + Delta-G solvation = -22966.174211 eV Core-core repulsion = 19688.773831 eV Total energy + Delta-G solvation = -3277.400380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 6.64 seconds Orbital eigenvalues (eV) -40.88210 -39.34450 -38.60056 -36.45514 -35.76653 -33.57371 -31.74723 -31.13803 -28.49134 -27.93591 -27.66371 -26.67823 -24.17633 -23.08400 -22.60380 -21.42953 -20.76400 -19.91170 -18.15293 -17.25529 -16.66220 -16.53348 -16.19931 -16.03556 -15.89457 -15.65131 -15.45846 -15.34510 -14.93308 -14.39493 -14.03992 -13.94425 -13.78140 -13.46896 -13.31802 -12.97531 -12.88600 -12.69659 -12.61503 -12.59353 -12.49364 -12.03346 -12.01040 -11.94817 -11.87205 -11.57527 -11.43766 -10.96587 -10.36206 -9.99800 -9.60478 -9.49292 -9.31581 -9.10066 -6.46367 0.40336 0.90836 1.46148 1.61764 1.76497 2.25656 2.30934 2.38196 2.74535 3.04275 3.56369 3.79571 3.90525 4.00437 4.22757 4.26934 4.29849 4.44655 4.44804 4.47002 4.52052 4.61972 4.71755 4.74526 4.82545 4.84505 4.88330 4.95358 5.02355 5.04294 5.11511 5.14562 5.27222 5.43087 5.43417 5.59394 5.66096 5.71724 5.89809 5.96791 6.03571 6.08888 6.20450 6.33804 6.69212 6.85846 6.92962 7.61237 8.04463 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019053 B = 0.003715 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.214783 B = 7535.750643 C = 8652.238227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.085 4.085 3 H 0.084 0.916 4 C 0.131 3.869 5 N -0.724 5.724 6 C 0.556 3.444 7 O -0.581 6.581 8 C -0.283 4.283 9 C -0.041 4.041 10 C -0.244 4.244 11 C -0.072 4.072 12 C -0.226 4.226 13 C 0.095 3.905 14 C -0.512 4.512 15 H 0.081 0.919 16 C -0.003 4.003 17 N -0.818 5.818 18 Si 1.116 2.884 19 H -0.264 1.264 20 H -0.259 1.259 21 H -0.272 1.272 22 C 0.064 3.936 23 N -0.551 5.551 24 C 0.018 3.982 25 C 0.023 3.977 26 H 0.049 0.951 27 H 0.075 0.925 28 H 0.048 0.952 29 H 0.045 0.955 30 H 0.051 0.949 31 H 0.405 0.595 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.283 0.717 37 H 0.032 0.968 38 H 0.079 0.921 39 H 0.022 0.978 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.208 3.897 -17.633 18.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.104 4.104 3 H 0.102 0.898 4 C 0.006 3.994 5 N -0.378 5.378 6 C 0.349 3.651 7 O -0.463 6.463 8 C -0.288 4.288 9 C -0.060 4.060 10 C -0.263 4.263 11 C -0.091 4.091 12 C -0.246 4.246 13 C 0.091 3.909 14 C -0.540 4.540 15 H 0.098 0.902 16 C -0.218 4.218 17 N -0.442 5.442 18 Si 0.933 3.067 19 H -0.188 1.188 20 H -0.183 1.183 21 H -0.197 1.197 22 C -0.064 4.064 23 N -0.275 5.275 24 C -0.130 4.130 25 C -0.125 4.125 26 H 0.068 0.932 27 H 0.094 0.906 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.243 0.757 32 H 0.152 0.848 33 H 0.155 0.845 34 H 0.143 0.857 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.041 0.959 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.098 0.902 44 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -4.354 2.455 -16.436 17.179 hybrid contribution 0.026 1.026 -0.940 1.392 sum -4.328 3.481 -17.376 18.242 Atomic orbital electron populations 1.21676 0.93310 1.01894 1.02058 1.21251 0.97689 0.99919 0.91561 0.89793 1.21239 0.98734 0.95233 0.84147 1.45730 1.59059 1.28364 1.04660 1.18454 0.78416 0.84342 0.83903 1.90656 1.42291 1.26416 1.86925 1.19810 1.16766 0.99776 0.92443 1.21145 0.93778 0.92126 0.98930 1.20818 1.10841 1.02855 0.91740 1.21165 0.95427 0.94362 0.98109 1.21215 1.07314 0.99040 0.96989 1.17906 0.89917 0.91900 0.91135 1.21114 1.21546 0.99893 1.11437 0.90155 1.28472 0.92777 1.08993 0.91572 1.70497 1.34771 1.01540 1.37428 0.83025 0.77899 0.68709 0.77063 1.18804 1.18336 1.19720 1.22025 0.97780 0.97444 0.89189 1.61960 1.58421 1.04689 1.02415 1.22505 0.95962 0.91092 1.03442 1.22428 0.99285 0.98772 0.91981 0.93198 0.90575 0.93324 0.93634 0.93102 0.75722 0.84760 0.84486 0.85727 0.89265 0.90514 0.94963 0.90286 0.95889 0.90199 0.91043 0.91025 0.90186 0.95734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 8.95 71.98 0.64 -1.97 16 2 C -0.09 -1.78 2.34 -10.80 -0.03 -1.81 16 3 H 0.08 1.66 6.34 -2.39 -0.02 1.64 16 4 C 0.13 3.88 5.06 86.38 0.44 4.32 16 5 N -0.72 -24.94 5.23 -466.37 -2.44 -27.38 16 6 C 0.56 26.33 7.73 86.66 0.67 27.00 16 7 O -0.58 -32.50 13.55 -4.09 -0.06 -32.56 16 8 C -0.28 -13.86 5.92 -19.70 -0.12 -13.97 16 9 C -0.04 -1.62 9.53 22.50 0.21 -1.40 16 10 C -0.24 -9.23 10.03 22.41 0.22 -9.00 16 11 C -0.07 -3.05 10.01 22.26 0.22 -2.83 16 12 C -0.23 -11.57 7.86 22.72 0.18 -11.39 16 13 C 0.10 5.29 5.18 -21.11 -0.11 5.18 16 14 C -0.51 -30.08 7.66 23.41 0.18 -29.90 16 15 H 0.08 5.00 5.91 -2.91 -0.02 4.98 16 16 C 0.00 -0.17 5.04 85.37 0.43 0.26 16 17 N -0.82 -46.34 12.57 21.88 0.27 -46.07 16 18 Si 1.12 47.81 29.98 68.60 2.06 49.86 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 21 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 22 C 0.06 1.23 4.35 86.30 0.38 1.60 16 23 N -0.55 -9.27 4.47 -948.85 -4.24 -13.51 16 24 C 0.02 0.27 9.33 127.69 1.19 1.46 16 25 C 0.02 0.32 9.57 127.69 1.22 1.54 16 26 H 0.05 1.00 7.18 -2.38 -0.02 0.98 16 27 H 0.08 1.38 7.75 -2.39 -0.02 1.36 16 28 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.41 11.42 5.69 -92.71 -0.53 10.89 16 32 H 0.13 4.02 6.41 -2.91 -0.02 4.01 16 33 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 34 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 35 H 0.09 4.78 6.93 -2.91 -0.02 4.76 16 36 H 0.28 16.46 6.54 -92.71 -0.61 15.86 16 37 H 0.03 0.65 8.12 -2.39 -0.02 0.63 16 38 H 0.08 1.49 8.06 -2.39 -0.02 1.47 16 39 H 0.02 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.08 0.97 8.12 -2.39 -0.02 0.95 16 41 H 0.07 1.07 6.37 -2.39 -0.02 1.05 16 42 H 0.07 0.93 8.12 -2.39 -0.02 0.91 16 43 H 0.08 0.89 8.12 -2.39 -0.02 0.87 16 44 H 0.02 0.33 8.14 -2.39 -0.02 0.32 16 Total: -1.00 -69.31 352.18 1.96 -67.35 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.62 Total: 33.20 kcal Atomic # 6 Polarization: -36.64 SS G_CDS: 5.74 Total: -30.90 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -6.41 Total: -86.96 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -0.06 Total: -32.56 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.06 Total: 49.86 kcal Total: -69.31 1.96 -67.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601588853.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.083 kcal (2) G-P(sol) polarization free energy of solvation -69.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.64 seconds