Wall clock time and date at job start Tue Mar 31 2020 08:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 N 1.46897 * 109.46772 * 180.02562 * 15 13 12 17 17 C 1.46901 * 111.00339 * 66.04549 * 16 15 13 18 18 C 1.46900 * 110.99803 * 189.99735 * 16 15 13 19 19 C 1.52998 * 109.47337 * 169.99915 * 18 16 15 20 20 C 1.50700 * 109.47364 * 180.02562 * 19 18 16 21 21 C 1.38238 * 119.99847 * 269.72447 * 20 19 18 22 22 C 1.38237 * 119.99708 * 179.76219 * 21 20 19 23 23 C 1.38230 * 119.99911 * 0.51275 * 22 21 20 24 24 C 1.38229 * 120.00310 * 359.74409 * 23 22 21 25 25 C 1.38233 * 119.99896 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 31 31 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 32 32 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 33 33 H 1.08997 * 109.47195 * 59.99921 * 17 16 15 34 34 H 1.08996 * 109.47267 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.47216 * 299.99846 * 17 16 15 36 36 H 1.09003 * 109.47378 * 289.99817 * 18 16 15 37 37 H 1.08998 * 109.46933 * 49.99873 * 18 16 15 38 38 H 1.08999 * 109.47521 * 300.00259 * 19 18 16 39 39 H 1.08998 * 109.47143 * 60.00087 * 19 18 16 40 40 H 1.08000 * 119.99926 * 0.02562 * 21 20 19 41 41 H 1.07997 * 119.99717 * 180.23308 * 22 21 20 42 42 H 1.08005 * 119.99824 * 179.72076 * 23 22 21 43 43 H 1.08001 * 120.00409 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00032 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 7 2.6986 0.2155 4.7121 17 6 1.3486 0.6550 5.0895 18 6 3.4018 -0.3705 5.8611 19 6 3.6521 0.7125 6.9124 20 6 4.3741 0.1115 8.0908 21 6 3.6544 -0.4145 9.1473 22 6 4.3166 -0.9702 10.2260 23 6 5.6985 -0.9903 10.2530 24 6 6.4182 -0.4596 9.1989 25 6 5.7560 0.0909 8.1176 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.2490 -1.6316 1.1527 31 1 1.9776 -1.5506 3.8326 32 1 3.6492 -1.1202 3.3980 33 1 0.7542 -0.2097 5.3845 34 1 1.4137 1.3525 5.9245 35 1 0.8762 1.1479 4.2399 36 1 2.7921 -1.1634 6.2944 37 1 4.3548 -0.7840 5.5314 38 1 4.2617 1.5055 6.4791 39 1 2.6991 1.1261 7.2421 40 1 2.5747 -0.3951 9.1280 41 1 3.7543 -1.3845 11.0497 42 1 6.2159 -1.4205 11.0978 43 1 7.4979 -0.4749 9.2202 44 1 6.3183 0.5060 7.2942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602086167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:42 Heat of formation + Delta-G solvation = -13.087602 kcal Electronic energy + Delta-G solvation = -22211.094768 eV Core-core repulsion = 18935.089948 eV Total energy + Delta-G solvation = -3276.004820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 5.73 seconds Orbital eigenvalues (eV) -39.63947 -39.04795 -36.95131 -34.68876 -33.18636 -32.34550 -31.11460 -29.66682 -28.59231 -27.37007 -25.27169 -25.02478 -22.79330 -22.19853 -20.91253 -20.56248 -19.33461 -17.15886 -16.97682 -16.10821 -15.81341 -15.51729 -15.20575 -15.15994 -14.64508 -14.36561 -14.10391 -13.65761 -13.62337 -13.12690 -12.96804 -12.90801 -12.53934 -12.33853 -11.95521 -11.81818 -11.52876 -11.37881 -11.32800 -11.15064 -11.04741 -10.93439 -10.79802 -10.63523 -10.28950 -10.21870 -9.15416 -9.04290 -9.02925 -8.83180 -8.53017 -8.16070 -7.84371 -6.10708 -4.19757 1.12115 1.16914 3.25459 3.31878 3.33581 3.46426 3.50988 3.76017 4.28835 4.48159 4.61360 4.69643 4.78662 4.91262 4.95382 5.10466 5.21322 5.27671 5.31368 5.38651 5.43237 5.47279 5.61377 5.68063 5.71566 5.74853 5.81391 5.88147 6.00453 6.23777 6.27974 6.35468 6.45256 6.78096 6.83448 6.98249 7.02696 7.15062 7.18509 7.50601 7.60634 7.72636 7.94690 8.17399 8.71820 8.81972 9.20462 9.48136 10.95261 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.002429 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.804132 B =11523.688924 C =11968.660264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.274 1.274 11 H -0.285 1.285 12 N -0.713 5.713 13 C 0.502 3.498 14 O -0.538 6.538 15 C 0.035 3.965 16 N -0.522 5.522 17 C 0.017 3.983 18 C 0.063 3.937 19 C -0.079 4.079 20 C -0.076 4.076 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.115 4.115 26 H 0.025 0.975 27 H 0.013 0.987 28 H 0.090 0.910 29 H 0.264 0.736 30 H 0.387 0.613 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.016 0.984 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.032 0.968 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.120 0.880 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.406 -5.165 22.789 24.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.361 5.361 13 C 0.286 3.714 14 O -0.416 6.416 15 C -0.097 4.097 16 N -0.246 5.246 17 C -0.131 4.131 18 C -0.065 4.065 19 C -0.117 4.117 20 C -0.077 4.077 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.133 4.133 26 H 0.044 0.956 27 H 0.033 0.967 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.219 0.781 31 H 0.074 0.926 32 H 0.115 0.885 33 H 0.035 0.965 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.138 0.862 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.352 -3.766 22.488 23.670 hybrid contribution -0.004 -1.742 -0.573 1.834 sum 6.349 -5.508 21.915 23.472 Atomic orbital electron populations 1.22071 0.98588 0.98980 1.00828 1.18708 0.90903 0.94003 0.80009 0.93388 1.21225 1.32338 1.13183 0.90369 0.92124 1.24900 0.94839 0.94995 0.99069 1.69906 1.35862 1.22504 1.23833 0.86447 0.78607 0.79808 0.82212 1.20560 1.19888 1.21099 1.46515 1.65553 1.13476 1.10603 1.20254 0.78909 0.87708 0.84529 1.90615 1.50385 1.15826 1.84732 1.22044 1.02327 0.93944 0.91344 1.61603 1.18809 1.38636 1.05567 1.22617 0.88396 0.99274 1.02807 1.22094 0.98786 0.95154 0.90508 1.20629 1.00630 0.98131 0.92308 1.19942 0.93817 0.98199 0.95734 1.21091 0.99843 0.98810 0.93852 1.21138 0.94604 0.99723 0.98354 1.21135 0.94305 1.00440 0.98763 1.21162 0.99873 0.98575 0.94119 1.21137 0.93934 0.99784 0.98483 0.95591 0.96744 0.89191 0.92602 0.78100 0.92630 0.88489 0.96503 0.91607 0.88817 0.94933 0.90708 0.89804 0.90730 0.86201 0.86250 0.86334 0.86152 0.85839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.65 9.26 37.16 0.34 -3.31 16 2 C 0.27 6.80 2.56 -69.09 -0.18 6.62 16 3 H 0.05 1.43 7.58 -51.92 -0.39 1.03 16 4 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -25.04 11.32 55.43 0.63 -24.41 16 8 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 12 N -0.71 -14.84 5.07 -54.93 -0.28 -15.11 16 13 C 0.50 9.99 7.52 -10.98 -0.08 9.91 16 14 O -0.54 -12.81 13.97 5.56 0.08 -12.73 16 15 C 0.03 0.51 5.45 -4.97 -0.03 0.48 16 16 N -0.52 -7.50 4.50 -244.37 -1.10 -8.60 16 17 C 0.02 0.24 9.01 60.07 0.54 0.78 16 18 C 0.06 0.70 4.94 -3.82 -0.02 0.68 16 19 C -0.08 -0.81 5.28 -27.88 -0.15 -0.95 16 20 C -0.08 -0.74 5.13 -104.62 -0.54 -1.27 16 21 C -0.12 -1.06 9.70 -39.58 -0.38 -1.45 16 22 C -0.12 -0.99 10.05 -39.58 -0.40 -1.38 16 23 C -0.13 -1.03 10.05 -39.59 -0.40 -1.42 16 24 C -0.12 -0.99 10.05 -39.59 -0.40 -1.39 16 25 C -0.12 -1.06 9.70 -39.59 -0.38 -1.45 16 26 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 29 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 30 H 0.39 6.92 8.54 -40.82 -0.35 6.57 16 31 H 0.06 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.10 1.25 7.93 -51.93 -0.41 0.83 16 33 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.07 0.81 6.30 -51.93 -0.33 0.48 16 35 H 0.09 1.63 5.88 -51.93 -0.31 1.33 16 36 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.07 0.80 7.93 -51.93 -0.41 0.39 16 38 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 39 H 0.07 0.74 6.41 -51.93 -0.33 0.40 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 41 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 44 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -31.13 360.18 -9.76 -40.89 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.03 Total: 5.82 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -2.46 Total: -6.97 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.75 Total: -48.13 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.73 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.13 -9.76 -40.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.798 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.73 seconds