Wall clock time and date at job start Tue Mar 31 2020 08:24:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 N 1.46897 * 109.46772 * 180.02562 * 15 13 12 17 17 C 1.46901 * 111.00339 * 66.04549 * 16 15 13 18 18 C 1.46900 * 110.99803 * 189.99735 * 16 15 13 19 19 C 1.52998 * 109.47337 * 169.99915 * 18 16 15 20 20 C 1.50700 * 109.47364 * 180.02562 * 19 18 16 21 21 C 1.38238 * 119.99847 * 269.72447 * 20 19 18 22 22 C 1.38237 * 119.99708 * 179.76219 * 21 20 19 23 23 C 1.38230 * 119.99911 * 0.51275 * 22 21 20 24 24 C 1.38229 * 120.00310 * 359.74409 * 23 22 21 25 25 C 1.38233 * 119.99896 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 28 28 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 31 31 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 32 32 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 33 33 H 1.08997 * 109.47195 * 59.99921 * 17 16 15 34 34 H 1.08996 * 109.47267 * 179.97438 * 17 16 15 35 35 H 1.08997 * 109.47216 * 299.99846 * 17 16 15 36 36 H 1.09003 * 109.47378 * 289.99817 * 18 16 15 37 37 H 1.08998 * 109.46933 * 49.99873 * 18 16 15 38 38 H 1.08999 * 109.47521 * 300.00259 * 19 18 16 39 39 H 1.08998 * 109.47143 * 60.00087 * 19 18 16 40 40 H 1.08000 * 119.99926 * 0.02562 * 21 20 19 41 41 H 1.07997 * 119.99717 * 180.23308 * 22 21 20 42 42 H 1.08005 * 119.99824 * 179.72076 * 23 22 21 43 43 H 1.08001 * 120.00409 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.00032 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 3.6306 -0.5441 -4.4118 10 1 2.4882 -2.5655 -3.7120 11 1 1.3445 -0.9492 -5.1122 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 7 2.6986 0.2155 4.7121 17 6 1.3486 0.6550 5.0895 18 6 3.4018 -0.3705 5.8611 19 6 3.6521 0.7125 6.9124 20 6 4.3741 0.1115 8.0908 21 6 3.6544 -0.4145 9.1473 22 6 4.3166 -0.9702 10.2260 23 6 5.6985 -0.9903 10.2530 24 6 6.4182 -0.4596 9.1989 25 6 5.7560 0.0909 8.1176 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7088 1.1611 -3.4845 30 1 2.2490 -1.6316 1.1527 31 1 1.9776 -1.5506 3.8326 32 1 3.6492 -1.1202 3.3980 33 1 0.7542 -0.2097 5.3845 34 1 1.4137 1.3525 5.9245 35 1 0.8762 1.1479 4.2399 36 1 2.7921 -1.1634 6.2944 37 1 4.3548 -0.7840 5.5314 38 1 4.2617 1.5055 6.4791 39 1 2.6991 1.1261 7.2421 40 1 2.5747 -0.3951 9.1280 41 1 3.7543 -1.3845 11.0497 42 1 6.2159 -1.4205 11.0978 43 1 7.4979 -0.4749 9.2202 44 1 6.3183 0.5060 7.2942 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602086167.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:39 Heat of formation + Delta-G solvation = -32.584351 kcal Electronic energy + Delta-G solvation = -22211.940210 eV Core-core repulsion = 18935.089948 eV Total energy + Delta-G solvation = -3276.850262 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.75428 -40.13803 -38.14197 -36.54935 -34.29315 -34.00531 -31.72483 -31.33521 -29.62468 -28.63450 -27.33090 -26.09282 -23.42917 -23.37986 -22.34425 -21.47258 -21.06802 -18.86783 -17.73373 -17.54217 -17.15866 -16.77711 -16.48330 -16.10824 -16.01296 -15.54852 -15.33022 -15.11231 -14.44097 -14.29580 -14.13505 -13.90743 -13.81250 -13.69854 -13.49901 -13.00540 -12.92843 -12.81506 -12.78172 -12.55712 -12.40561 -12.23780 -12.12183 -12.03404 -11.81746 -11.58971 -11.09816 -10.66172 -10.50084 -9.77947 -9.69322 -9.57040 -9.24054 -8.16582 -6.34008 0.47936 0.54339 1.45358 1.46015 1.56688 1.89787 2.31913 2.50918 2.91454 3.12788 3.15756 3.91653 3.94677 4.07073 4.13374 4.21887 4.27169 4.34478 4.37832 4.40515 4.57417 4.59300 4.68538 4.70667 4.73255 4.76569 4.92644 4.98864 5.05750 5.11122 5.15279 5.23319 5.29782 5.45144 5.62158 5.63736 5.67215 5.71705 5.77845 5.89305 6.00512 6.12128 6.13938 6.18132 6.74601 7.05046 7.34247 7.64703 8.89691 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.035488 B = 0.002429 C = 0.002339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.804132 B =11523.688924 C =11968.660264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.005 1.005 4 C -0.545 4.545 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.973 3.027 9 H -0.278 1.278 10 H -0.259 1.259 11 H -0.284 1.284 12 N -0.709 5.709 13 C 0.496 3.504 14 O -0.583 6.583 15 C 0.047 3.953 16 N -0.544 5.544 17 C 0.022 3.978 18 C 0.069 3.931 19 C -0.072 4.072 20 C -0.088 4.088 21 C -0.128 4.128 22 C -0.127 4.127 23 C -0.133 4.133 24 C -0.127 4.127 25 C -0.129 4.129 26 H 0.040 0.960 27 H 0.011 0.989 28 H 0.065 0.935 29 H 0.265 0.735 30 H 0.404 0.596 31 H 0.083 0.917 32 H 0.122 0.878 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.044 0.956 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.129 0.871 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.539 -7.588 24.142 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.013 0.987 4 C -0.583 4.583 5 H 0.092 0.908 6 C -0.188 4.188 7 N -0.557 5.557 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.183 1.183 11 H -0.210 1.210 12 N -0.359 5.359 13 C 0.283 3.717 14 O -0.463 6.463 15 C -0.084 4.084 16 N -0.268 5.268 17 C -0.126 4.126 18 C -0.058 4.058 19 C -0.110 4.110 20 C -0.089 4.089 21 C -0.146 4.146 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.147 4.147 26 H 0.059 0.941 27 H 0.030 0.970 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.239 0.761 31 H 0.101 0.899 32 H 0.140 0.860 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.503 -6.230 23.876 25.791 hybrid contribution -0.339 -0.936 -0.903 1.345 sum 7.164 -7.166 22.972 25.108 Atomic orbital electron populations 1.21880 0.98404 0.99345 0.99443 1.18287 0.91012 0.91813 0.82064 0.98680 1.21561 1.32443 1.13529 0.90811 0.90808 1.25837 0.94923 0.95647 1.02428 1.70062 1.37033 1.24030 1.24554 0.85327 0.77722 0.79202 0.77961 1.20407 1.18289 1.21012 1.46270 1.65696 1.14213 1.09764 1.21233 0.77611 0.87326 0.85524 1.90605 1.52039 1.18131 1.85513 1.21964 1.03897 0.93727 0.88767 1.61545 1.19088 1.39493 1.06700 1.22487 0.88516 0.99972 1.01599 1.22096 0.98718 0.95520 0.89465 1.20522 1.00528 0.97587 0.92346 1.19927 0.94073 0.99054 0.95851 1.21280 1.00451 0.98928 0.93984 1.21435 0.95025 0.99359 0.98634 1.21466 0.94480 0.99927 0.99239 1.21433 1.00929 0.98214 0.93907 1.21298 0.94017 1.00275 0.99148 0.94123 0.97009 0.91644 0.92602 0.76073 0.89930 0.86009 0.94929 0.90149 0.92680 0.93802 0.90058 0.90967 0.90683 0.85353 0.84355 0.84260 0.84492 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 9.26 71.98 0.67 -6.09 16 2 C 0.27 14.26 2.56 44.24 0.11 14.37 16 3 H 0.00 -0.29 7.58 -2.38 -0.02 -0.31 16 4 C -0.55 -29.00 8.73 25.60 0.22 -28.78 16 5 H 0.07 3.64 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.62 5.30 84.66 0.45 1.07 16 7 N -0.92 -53.24 11.32 21.45 0.24 -52.99 16 8 Si 0.97 42.16 29.54 68.60 2.03 44.18 16 9 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 10 H -0.26 -10.51 7.11 99.48 0.71 -9.81 16 11 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 12 N -0.71 -29.36 5.07 -446.09 -2.26 -31.62 16 13 C 0.50 19.74 7.52 87.66 0.66 20.40 16 14 O -0.58 -28.73 13.97 -3.04 -0.04 -28.78 16 15 C 0.05 1.29 5.45 85.56 0.47 1.76 16 16 N -0.54 -14.91 4.50 -927.06 -4.17 -19.08 16 17 C 0.02 0.61 9.01 127.69 1.15 1.76 16 18 C 0.07 1.40 4.94 86.30 0.43 1.83 16 19 C -0.07 -1.39 5.28 29.85 0.16 -1.23 16 20 C -0.09 -1.59 5.13 -19.87 -0.10 -1.69 16 21 C -0.13 -2.09 9.70 22.27 0.22 -1.87 16 22 C -0.13 -1.80 10.05 22.27 0.22 -1.57 16 23 C -0.13 -1.82 10.05 22.27 0.22 -1.59 16 24 C -0.13 -1.88 10.05 22.27 0.22 -1.66 16 25 C -0.13 -2.22 9.70 22.27 0.22 -2.01 16 26 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.06 3.68 6.07 -2.39 -0.01 3.66 16 29 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 30 H 0.40 13.82 8.54 -92.71 -0.79 13.03 16 31 H 0.08 1.86 8.12 -2.39 -0.02 1.85 16 32 H 0.12 2.76 7.93 -2.39 -0.02 2.74 16 33 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 1.92 6.30 -2.39 -0.02 1.90 16 35 H 0.05 1.97 5.88 -2.39 -0.01 1.95 16 36 H 0.04 0.81 8.12 -2.39 -0.02 0.79 16 37 H 0.08 1.55 7.93 -2.39 -0.02 1.53 16 38 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 39 H 0.07 1.40 6.41 -2.39 -0.02 1.39 16 40 H 0.13 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.14 1.35 8.06 -2.91 -0.02 1.33 16 42 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 43 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 44 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 Total: -1.00 -69.10 360.18 1.30 -67.80 By element: Atomic # 1 Polarization: 25.59 SS G_CDS: 0.19 Total: 25.78 kcal Atomic # 6 Polarization: -10.61 SS G_CDS: 5.31 Total: -5.29 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -6.19 Total: -103.69 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.04 Total: -28.78 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -69.10 1.30 -67.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086167.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.216 kcal (2) G-P(sol) polarization free energy of solvation -69.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds