Wall clock time and date at job start Tue Mar 31 2020 08:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 N 1.46891 * 109.47300 * 179.97438 * 15 13 12 17 17 C 1.46900 * 111.00226 * 66.04762 * 16 15 13 18 18 C 1.46905 * 111.00149 * 190.00088 * 16 15 13 19 19 C 1.52997 * 109.47188 * 169.99914 * 18 16 15 20 20 C 1.50705 * 109.46974 * 179.97438 * 19 18 16 21 21 C 1.38236 * 120.00166 * 269.72552 * 20 19 18 22 22 C 1.38233 * 120.00250 * 179.76358 * 21 20 19 23 23 C 1.38239 * 119.99823 * 0.51573 * 22 21 20 24 24 C 1.38240 * 119.99721 * 359.73866 * 23 22 21 25 25 C 1.38233 * 120.00137 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 27 27 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 28 28 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 29 29 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 30 30 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 31 31 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 32 32 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 33 33 H 1.09005 * 109.47053 * 59.99836 * 17 16 15 34 34 H 1.08996 * 109.47403 * 179.97438 * 17 16 15 35 35 H 1.09004 * 109.46870 * 299.99926 * 17 16 15 36 36 H 1.09000 * 109.47163 * 289.99939 * 18 16 15 37 37 H 1.09004 * 109.46908 * 49.99997 * 18 16 15 38 38 H 1.08993 * 109.47246 * 299.99726 * 19 18 16 39 39 H 1.09004 * 109.47128 * 60.00218 * 19 18 16 40 40 H 1.08003 * 119.99858 * 0.02562 * 21 20 19 41 41 H 1.08000 * 119.99826 * 180.22875 * 22 21 20 42 42 H 1.07996 * 120.00137 * 179.72260 * 23 22 21 43 43 H 1.07996 * 119.99540 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00019 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 7 2.6989 0.2152 -4.7120 17 6 3.7028 1.2617 -4.4779 18 6 2.9548 -0.4862 -5.9772 19 6 2.7528 0.4801 -7.1460 20 6 3.0160 -0.2393 -8.4438 21 6 4.2892 -0.2506 -8.9820 22 6 4.5317 -0.9146 -10.1699 23 6 3.4987 -1.5584 -10.8252 24 6 2.2243 -1.5426 -10.2897 25 6 1.9829 -0.8827 -9.0993 26 1 -0.3633 0.4106 0.9420 27 1 -0.3632 0.6107 -0.8266 28 1 -0.3633 -1.0211 -0.1156 29 1 2.1697 -1.8615 3.4635 30 1 2.2490 -1.6319 -1.1526 31 1 3.6493 -1.1205 -3.3979 32 1 1.9778 -1.5508 -3.8325 33 1 4.6852 0.8036 -4.3631 34 1 3.7185 1.9464 -5.3258 35 1 3.4500 1.8113 -3.5712 36 1 3.9796 -0.8576 -5.9858 37 1 2.2640 -1.3237 -6.0745 38 1 1.7281 0.8515 -7.1374 39 1 3.4436 1.3176 -7.0487 40 1 5.0955 0.2558 -8.4721 41 1 5.5273 -0.9265 -10.5884 42 1 3.6872 -2.0734 -11.7556 43 1 1.4172 -2.0452 -10.8019 44 1 0.9872 -0.8701 -8.6812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602086168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:49 Heat of formation + Delta-G solvation = -12.354673 kcal Electronic energy + Delta-G solvation = -22286.685771 eV Core-core repulsion = 19010.712734 eV Total energy + Delta-G solvation = -3275.973037 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.69930 -39.19438 -37.07048 -34.86987 -33.24842 -32.43405 -31.15255 -30.16531 -28.80852 -27.58500 -25.21505 -24.72913 -22.83177 -22.22728 -20.86195 -20.54169 -19.50317 -17.75230 -17.07778 -16.45831 -15.88764 -15.80801 -15.39106 -15.13322 -14.72705 -14.31354 -14.09173 -13.67705 -13.48344 -13.14741 -13.06166 -13.02166 -12.65657 -12.51781 -12.23844 -12.03843 -11.73313 -11.57315 -11.51678 -11.39577 -11.23202 -11.09504 -10.85698 -10.53581 -10.10340 -9.65113 -9.19410 -9.17064 -9.01338 -8.91223 -8.40726 -8.28863 -8.07774 -6.56460 -4.21664 1.08164 1.13169 3.29178 3.41861 3.44796 3.46360 3.60444 3.66825 4.27681 4.44585 4.57054 4.65005 4.74678 4.87165 4.89704 5.04335 5.18166 5.21145 5.26582 5.30650 5.35917 5.41174 5.49999 5.59818 5.63696 5.69539 5.76266 5.83183 5.94539 6.20009 6.24359 6.28059 6.40721 6.41466 6.57398 6.70120 6.74187 6.91566 7.00760 7.07676 7.32219 7.44412 7.68558 8.24400 8.52211 8.72010 9.03844 9.47233 10.82732 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.041666 B = 0.002483 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.846748 B =11274.225392 C =11357.201673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.243 3.757 3 H 0.042 0.958 4 C -0.616 4.616 5 H 0.061 0.939 6 C 0.039 3.961 7 N -0.900 5.900 8 Si 1.039 2.961 9 H -0.284 1.284 10 H -0.266 1.266 11 H -0.284 1.284 12 N -0.706 5.706 13 C 0.503 3.497 14 O -0.539 6.539 15 C 0.035 3.965 16 N -0.523 5.523 17 C 0.016 3.984 18 C 0.062 3.938 19 C -0.079 4.079 20 C -0.077 4.077 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.128 4.128 24 C -0.119 4.119 25 C -0.116 4.116 26 H 0.056 0.944 27 H 0.030 0.970 28 H 0.042 0.958 29 H 0.269 0.731 30 H 0.391 0.609 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.018 0.982 34 H 0.066 0.934 35 H 0.093 0.907 36 H 0.033 0.967 37 H 0.074 0.926 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.397 -1.606 -26.207 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.139 3.861 3 H 0.059 0.941 4 C -0.654 4.654 5 H 0.079 0.921 6 C -0.167 4.167 7 N -0.533 5.533 8 Si 0.866 3.134 9 H -0.211 1.211 10 H -0.191 1.191 11 H -0.210 1.210 12 N -0.355 5.355 13 C 0.287 3.713 14 O -0.417 6.417 15 C -0.096 4.096 16 N -0.247 5.247 17 C -0.132 4.132 18 C -0.066 4.066 19 C -0.116 4.116 20 C -0.078 4.078 21 C -0.136 4.136 22 C -0.138 4.138 23 C -0.146 4.146 24 C -0.137 4.137 25 C -0.134 4.134 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.036 0.964 34 H 0.085 0.915 35 H 0.111 0.889 36 H 0.052 0.948 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 2.363 0.642 -25.118 25.238 hybrid contribution 1.359 -2.305 -1.046 2.873 sum 3.723 -1.663 -26.165 26.481 Atomic orbital electron populations 1.22435 0.99007 0.99824 0.99977 1.19024 0.90457 0.94185 0.82385 0.94053 1.22107 1.41044 1.11137 0.91092 0.92108 1.25692 0.93918 1.05471 0.91642 1.70827 1.43485 1.08283 1.30703 0.84177 0.77553 0.75306 0.76363 1.21078 1.19144 1.20996 1.46280 1.65544 1.13711 1.09952 1.20326 0.78848 0.87736 0.84362 1.90607 1.50434 1.15899 1.84778 1.22019 1.01186 0.95421 0.90996 1.61620 1.49580 1.12748 1.00708 1.22627 0.91463 0.95002 1.04086 1.22100 0.99627 0.96208 0.88636 1.20623 1.03674 0.97470 0.89879 1.19933 0.93482 0.97953 0.96394 1.21093 0.96472 0.99860 0.96154 1.21146 0.99079 0.97924 0.95637 1.21145 0.93247 1.00117 1.00089 1.21165 0.96992 0.99431 0.96144 1.21128 0.99082 0.97735 0.95409 0.92544 0.95066 0.93888 0.92098 0.77603 0.92383 0.88433 0.96363 0.91528 0.88852 0.94835 0.90705 0.89835 0.90717 0.86185 0.86214 0.86301 0.86141 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.76 37.16 0.33 -3.19 16 2 C 0.24 5.86 2.11 -69.08 -0.15 5.72 16 3 H 0.04 1.08 6.21 -51.93 -0.32 0.76 16 4 C -0.62 -16.68 9.02 -34.44 -0.31 -16.99 16 5 H 0.06 1.72 7.96 -52.48 -0.42 1.30 16 6 C 0.04 1.10 5.33 -17.82 -0.09 1.01 16 7 N -0.90 -26.89 13.69 55.43 0.76 -26.13 16 8 Si 1.04 25.13 26.17 -169.99 -4.45 20.68 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.27 -6.11 5.53 56.52 0.31 -5.80 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 N -0.71 -14.22 5.07 -54.93 -0.28 -14.50 16 13 C 0.50 9.55 7.52 -10.99 -0.08 9.47 16 14 O -0.54 -12.10 13.97 5.56 0.08 -12.02 16 15 C 0.04 0.49 5.45 -4.98 -0.03 0.47 16 16 N -0.52 -7.17 4.50 -244.37 -1.10 -8.27 16 17 C 0.02 0.22 9.01 60.06 0.54 0.76 16 18 C 0.06 0.67 4.94 -3.82 -0.02 0.65 16 19 C -0.08 -0.76 5.28 -27.88 -0.15 -0.91 16 20 C -0.08 -0.72 5.13 -104.62 -0.54 -1.25 16 21 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 22 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 23 C -0.13 -0.99 10.05 -39.58 -0.40 -1.39 16 24 C -0.12 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.12 -1.02 9.70 -39.58 -0.38 -1.41 16 26 H 0.06 1.30 5.06 -51.93 -0.26 1.04 16 27 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.27 7.94 8.73 -40.82 -0.36 7.59 16 30 H 0.39 6.96 8.53 -40.82 -0.35 6.61 16 31 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 32 H 0.10 1.18 7.93 -51.93 -0.41 0.77 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 35 H 0.09 1.57 5.88 -51.93 -0.31 1.26 16 36 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 37 H 0.07 0.76 7.93 -51.93 -0.41 0.35 16 38 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 39 H 0.07 0.71 6.41 -51.93 -0.33 0.37 16 40 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 41 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 42 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 43 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 355.22 15.07 5.35 5.35 Total: -1.00 -31.86 355.22 -9.12 -40.98 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -7.03 Total: 5.11 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -2.46 Total: -11.20 kcal Atomic # 7 Polarization: -48.28 SS G_CDS: -0.62 Total: -48.90 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -4.45 Total: 20.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.86 -9.12 -40.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.625 kcal (2) G-P(sol) polarization free energy of solvation -31.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds