Wall clock time and date at job start Tue Mar 31 2020 08:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47385 * 2 1 4 4 C 1.50702 * 109.46686 * 120.00192 * 2 1 3 5 5 H 1.08007 * 119.99981 * 114.47702 * 4 2 1 6 6 C 1.37872 * 120.00181 * 294.48189 * 4 2 1 7 7 N 1.31507 * 120.00188 * 164.58940 * 6 4 2 8 8 Si 1.86797 * 119.99894 * 344.86064 * 6 4 2 9 9 H 1.48501 * 109.47054 * 269.72685 * 8 6 4 10 10 H 1.48506 * 109.47355 * 29.72399 * 8 6 4 11 11 H 1.48500 * 109.47516 * 149.72369 * 8 6 4 12 12 N 1.46503 * 109.46991 * 239.99842 * 2 1 3 13 13 C 1.34774 * 120.00000 * 85.00701 * 12 2 1 14 14 O 1.21281 * 119.99791 * 0.02562 * 13 12 2 15 15 C 1.50697 * 120.00282 * 179.97438 * 13 12 2 16 16 N 1.46891 * 109.47300 * 179.97438 * 15 13 12 17 17 C 1.46900 * 111.00226 * 66.04762 * 16 15 13 18 18 C 1.46905 * 111.00149 * 190.00088 * 16 15 13 19 19 C 1.52997 * 109.47188 * 169.99914 * 18 16 15 20 20 C 1.50705 * 109.46974 * 179.97438 * 19 18 16 21 21 C 1.38236 * 120.00166 * 269.72552 * 20 19 18 22 22 C 1.38233 * 120.00250 * 179.76358 * 21 20 19 23 23 C 1.38239 * 119.99823 * 0.51573 * 22 21 20 24 24 C 1.38240 * 119.99721 * 359.73866 * 23 22 21 25 25 C 1.38233 * 120.00137 * 0.02562 * 24 23 22 26 26 H 1.08997 * 109.47143 * 293.55201 * 1 2 3 27 27 H 1.09005 * 109.46269 * 53.54439 * 1 2 3 28 28 H 1.08992 * 109.47288 * 173.53991 * 1 2 3 29 29 H 0.97004 * 120.00365 * 355.18112 * 7 6 4 30 30 H 0.97002 * 119.99993 * 265.00302 * 12 2 1 31 31 H 1.09001 * 109.47433 * 300.00072 * 15 13 12 32 32 H 1.09001 * 109.47090 * 59.99525 * 15 13 12 33 33 H 1.09005 * 109.47053 * 59.99836 * 17 16 15 34 34 H 1.08996 * 109.47403 * 179.97438 * 17 16 15 35 35 H 1.09004 * 109.46870 * 299.99926 * 17 16 15 36 36 H 1.09000 * 109.47163 * 289.99939 * 18 16 15 37 37 H 1.09004 * 109.46908 * 49.99997 * 18 16 15 38 38 H 1.08993 * 109.47246 * 299.99726 * 19 18 16 39 39 H 1.09004 * 109.47128 * 60.00218 * 19 18 16 40 40 H 1.08003 * 119.99858 * 0.02562 * 21 20 19 41 41 H 1.08000 * 119.99826 * 180.22875 * 22 21 20 42 42 H 1.07996 * 120.00137 * 179.72260 * 23 22 21 43 43 H 1.07996 * 119.99540 * 179.97438 * 24 23 22 44 44 H 1.08002 * 120.00019 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5776 -1.6377 1.1339 6 6 1.7955 -0.1769 2.4795 7 7 1.9543 -0.9200 3.5529 8 14 1.2419 1.5993 2.6468 9 1 2.4316 2.4785 2.7762 10 1 0.4655 1.9913 1.4430 11 1 0.3884 1.7403 3.8538 12 7 2.0183 -0.6907 -1.1962 13 6 2.1472 -0.0183 -2.3571 14 8 1.8593 1.1586 -2.4114 15 6 2.6500 -0.7285 -3.5874 16 7 2.6989 0.2152 -4.7120 17 6 3.7028 1.2617 -4.4779 18 6 2.9548 -0.4862 -5.9772 19 6 2.7528 0.4801 -7.1460 20 6 3.0160 -0.2393 -8.4438 21 6 4.2892 -0.2506 -8.9820 22 6 4.5317 -0.9146 -10.1699 23 6 3.4987 -1.5584 -10.8252 24 6 2.2243 -1.5426 -10.2897 25 6 1.9829 -0.8827 -9.0993 26 1 -0.3633 0.4106 0.9420 27 1 -0.3632 0.6107 -0.8266 28 1 -0.3633 -1.0211 -0.1156 29 1 2.1697 -1.8615 3.4635 30 1 2.2490 -1.6319 -1.1526 31 1 3.6493 -1.1205 -3.3979 32 1 1.9778 -1.5508 -3.8325 33 1 4.6852 0.8036 -4.3631 34 1 3.7185 1.9464 -5.3258 35 1 3.4500 1.8113 -3.5712 36 1 3.9796 -0.8576 -5.9858 37 1 2.2640 -1.3237 -6.0745 38 1 1.7281 0.8515 -7.1374 39 1 3.4436 1.3176 -7.0487 40 1 5.0955 0.2558 -8.4721 41 1 5.5273 -0.9265 -10.5884 42 1 3.6872 -2.0734 -11.7556 43 1 1.4172 -2.0452 -10.8019 44 1 0.9872 -0.8701 -8.6812 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602086168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:24:48 Heat of formation + Delta-G solvation = -33.210114 kcal Electronic energy + Delta-G solvation = -22287.590131 eV Core-core repulsion = 19010.712734 eV Total energy + Delta-G solvation = -3276.877397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83639 -40.16181 -38.20336 -36.65526 -34.44631 -34.03398 -31.86217 -31.73576 -29.73260 -28.72900 -26.87136 -26.10057 -23.42762 -23.30581 -22.22292 -21.48784 -21.17707 -19.73857 -17.93321 -17.71896 -17.12349 -16.83085 -16.54130 -16.05937 -15.77270 -15.60771 -15.33379 -15.10972 -14.55256 -14.37775 -14.26442 -14.17293 -13.98386 -13.71904 -13.60805 -13.42459 -13.29932 -12.84132 -12.57977 -12.53357 -12.47211 -12.05209 -12.02625 -11.83006 -11.60349 -11.51621 -11.10434 -10.66573 -10.56297 -9.84940 -9.79129 -9.58571 -9.28977 -8.78785 -6.44810 0.46643 0.53139 1.48484 1.49648 1.71069 1.81086 2.31568 2.43625 2.88946 3.00994 3.09901 3.87286 3.92140 4.02063 4.10898 4.20539 4.24774 4.32271 4.35054 4.37056 4.52350 4.55840 4.57501 4.66887 4.69341 4.71691 4.73350 4.80899 4.97170 5.04261 5.09553 5.14159 5.22109 5.28678 5.44531 5.60955 5.65524 5.66114 5.68656 5.76357 5.92354 6.01662 6.09786 6.16666 6.52894 6.90575 7.28489 7.50804 8.59364 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.041666 B = 0.002483 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.846748 B =11274.225392 C =11357.201673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.246 3.754 3 H 0.022 0.978 4 C -0.610 4.610 5 H 0.041 0.959 6 C -0.006 4.006 7 N -0.930 5.930 8 Si 1.073 2.927 9 H -0.277 1.277 10 H -0.249 1.249 11 H -0.279 1.279 12 N -0.708 5.708 13 C 0.500 3.500 14 O -0.575 6.575 15 C 0.045 3.955 16 N -0.540 5.540 17 C 0.020 3.980 18 C 0.068 3.932 19 C -0.071 4.071 20 C -0.089 4.089 21 C -0.129 4.129 22 C -0.127 4.127 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.128 4.128 26 H 0.051 0.949 27 H 0.036 0.964 28 H 0.052 0.948 29 H 0.259 0.741 30 H 0.403 0.597 31 H 0.078 0.922 32 H 0.124 0.876 33 H 0.029 0.971 34 H 0.082 0.918 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.489 -1.866 -28.556 28.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.141 3.859 3 H 0.040 0.960 4 C -0.648 4.648 5 H 0.059 0.941 6 C -0.207 4.207 7 N -0.565 5.565 8 Si 0.895 3.105 9 H -0.203 1.203 10 H -0.174 1.174 11 H -0.205 1.205 12 N -0.358 5.358 13 C 0.287 3.713 14 O -0.455 6.455 15 C -0.086 4.086 16 N -0.264 5.264 17 C -0.127 4.127 18 C -0.059 4.059 19 C -0.109 4.109 20 C -0.089 4.089 21 C -0.147 4.147 22 C -0.145 4.145 23 C -0.151 4.151 24 C -0.145 4.145 25 C -0.146 4.146 26 H 0.070 0.930 27 H 0.055 0.945 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.238 0.762 31 H 0.096 0.904 32 H 0.142 0.858 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.155 0.845 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.468 0.350 -27.503 27.616 hybrid contribution 1.381 -2.279 -0.417 2.697 sum 3.849 -1.929 -27.920 28.250 Atomic orbital electron populations 1.22323 0.97780 1.00547 0.99956 1.18724 0.91300 0.93035 0.82874 0.95995 1.22266 1.39896 1.10243 0.92423 0.94112 1.26838 0.93851 1.08269 0.91735 1.70926 1.45933 1.07982 1.31626 0.83724 0.77839 0.71736 0.77152 1.20325 1.17360 1.20492 1.46132 1.65902 1.14270 1.09457 1.21162 0.77656 0.87370 0.85085 1.90597 1.51796 1.17688 1.85414 1.21964 1.02499 0.95329 0.88786 1.61584 1.50081 1.13166 1.01575 1.22515 0.91903 0.95255 1.03072 1.22107 1.00223 0.96319 0.87254 1.20517 1.03135 0.97309 0.89917 1.19937 0.94003 0.98604 0.96404 1.21282 0.96544 1.00213 0.96686 1.21435 1.00140 0.97540 0.95419 1.21470 0.93070 0.99834 1.00774 1.21442 0.97815 0.99267 0.95975 1.21303 0.99327 0.98059 0.95957 0.93021 0.94454 0.92937 0.93198 0.76239 0.90439 0.85845 0.95264 0.89984 0.92338 0.94070 0.89981 0.90684 0.90691 0.85426 0.84454 0.84314 0.84459 0.85398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.55 8.76 71.98 0.63 -5.92 16 2 C 0.25 11.71 2.11 44.25 0.09 11.80 16 3 H 0.02 1.15 6.21 -2.39 -0.01 1.13 16 4 C -0.61 -33.16 9.02 25.60 0.23 -32.93 16 5 H 0.04 2.33 7.96 -2.91 -0.02 2.31 16 6 C -0.01 -0.37 5.33 84.65 0.45 0.09 16 7 N -0.93 -56.26 13.69 21.44 0.29 -55.96 16 8 Si 1.07 50.49 26.17 68.60 1.80 52.28 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.25 -10.97 5.53 99.48 0.55 -10.42 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 12 N -0.71 -27.79 5.07 -446.10 -2.26 -30.05 16 13 C 0.50 18.40 7.52 87.66 0.66 19.06 16 14 O -0.58 -25.58 13.97 -3.03 -0.04 -25.62 16 15 C 0.05 1.16 5.45 85.56 0.47 1.63 16 16 N -0.54 -13.77 4.50 -927.06 -4.17 -17.95 16 17 C 0.02 0.53 9.01 127.69 1.15 1.68 16 18 C 0.07 1.30 4.94 86.30 0.43 1.73 16 19 C -0.07 -1.27 5.28 29.85 0.16 -1.11 16 20 C -0.09 -1.51 5.13 -19.86 -0.10 -1.62 16 21 C -0.13 -2.03 9.70 22.27 0.22 -1.82 16 22 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 23 C -0.13 -1.77 10.05 22.27 0.22 -1.54 16 24 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 25 C -0.13 -2.07 9.70 22.27 0.22 -1.86 16 26 H 0.05 2.31 5.06 -2.39 -0.01 2.30 16 27 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.26 15.65 8.73 -92.71 -0.81 14.85 16 30 H 0.40 13.84 8.53 -92.71 -0.79 13.05 16 31 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 32 H 0.12 2.58 7.93 -2.39 -0.02 2.56 16 33 H 0.03 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.08 1.82 6.30 -2.39 -0.02 1.80 16 35 H 0.06 1.95 5.88 -2.38 -0.01 1.94 16 36 H 0.04 0.74 8.12 -2.39 -0.02 0.72 16 37 H 0.08 1.46 7.93 -2.39 -0.02 1.44 16 38 H 0.07 1.45 8.09 -2.39 -0.02 1.43 16 39 H 0.07 1.30 6.41 -2.39 -0.02 1.29 16 40 H 0.13 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 42 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 44 H 0.13 1.83 8.06 -2.91 -0.02 1.81 16 Total: -1.00 -68.37 355.22 0.88 -67.49 By element: Atomic # 1 Polarization: 23.73 SS G_CDS: 0.00 Total: 23.73 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: 5.27 Total: -13.92 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -6.14 Total: -103.96 kcal Atomic # 8 Polarization: -25.58 SS G_CDS: -0.04 Total: -25.62 kcal Atomic # 14 Polarization: 50.49 SS G_CDS: 1.80 Total: 52.28 kcal Total: -68.37 0.88 -67.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602086168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.282 kcal (2) G-P(sol) polarization free energy of solvation -68.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds