Wall clock time and date at job start Tue Mar 31 2020 08:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08999 * 109.46811 * 2 1 4 4 C 1.50697 * 109.46758 * 239.99862 * 2 1 3 5 5 O 1.21282 * 119.99795 * 249.29141 * 4 2 1 6 6 N 1.34771 * 120.00138 * 69.30093 * 4 2 1 7 7 C 1.46505 * 120.00096 * 179.97438 * 6 4 2 8 8 H 1.09000 * 109.47066 * 34.99913 * 7 6 4 9 9 C 1.52999 * 109.47182 * 154.99802 * 7 6 4 10 10 C 1.50702 * 109.46937 * 295.00092 * 9 7 6 11 11 H 1.07997 * 120.00447 * 359.97438 * 10 9 7 12 12 C 1.37886 * 120.00041 * 179.97438 * 10 9 7 13 13 N 1.31516 * 119.99533 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00029 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.46998 * 90.00527 * 14 12 10 16 16 H 1.48500 * 109.46921 * 209.99928 * 14 12 10 17 17 H 1.48498 * 109.47431 * 330.00145 * 14 12 10 18 18 C 1.50695 * 109.47097 * 274.99752 * 7 6 4 19 19 C 1.38241 * 120.00266 * 319.72652 * 18 7 6 20 20 C 1.38233 * 120.00191 * 179.81235 * 19 18 7 21 21 C 1.38230 * 119.99918 * 0.39168 * 20 19 18 22 22 C 1.38235 * 119.99932 * 359.86287 * 21 20 19 23 23 C 1.38233 * 120.00319 * 359.95240 * 22 21 20 24 24 N 1.46898 * 109.46902 * 119.99787 * 2 1 3 25 25 C 1.46893 * 111.00321 * 287.22797 * 24 2 1 26 26 C 1.46905 * 111.00312 * 51.18417 * 24 2 1 27 27 H 1.08997 * 109.47002 * 300.00214 * 1 2 3 28 28 H 1.08997 * 109.46943 * 59.99848 * 1 2 3 29 29 H 1.08999 * 109.47171 * 180.02562 * 1 2 3 30 30 H 0.97000 * 120.00352 * 359.97438 * 6 4 2 31 31 H 1.09006 * 109.47433 * 54.99505 * 9 7 6 32 32 H 1.09002 * 109.47315 * 175.00200 * 9 7 6 33 33 H 0.96997 * 119.99450 * 179.97438 * 13 12 10 34 34 H 1.08005 * 119.99586 * 0.02562 * 19 18 7 35 35 H 1.08003 * 119.99994 * 180.22996 * 20 19 18 36 36 H 1.08000 * 119.99895 * 179.83654 * 21 20 19 37 37 H 1.08007 * 119.99868 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.00016 * 180.02562 * 23 22 21 39 39 H 1.09004 * 109.47407 * 65.59050 * 25 24 2 40 40 H 1.09000 * 109.47374 * 185.59516 * 25 24 2 41 41 H 1.09002 * 109.47154 * 305.59456 * 25 24 2 42 42 H 1.09002 * 109.47083 * 59.99250 * 26 24 2 43 43 H 1.08993 * 109.47075 * 179.97438 * 26 24 2 44 44 H 1.09001 * 109.46538 * 300.00022 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 8 2.5846 -1.7853 -1.1271 6 7 1.8679 -0.1514 -2.4457 7 6 2.3567 -0.8418 -3.6418 8 1 2.2389 -1.9178 -3.5139 9 6 1.5533 -0.3821 -4.8601 10 6 0.1180 -0.8156 -4.7080 11 1 -0.1903 -1.3644 -3.8305 12 6 -0.8017 -0.5114 -5.6893 13 7 -0.4263 0.1574 -6.7577 14 14 -2.5806 -1.0494 -5.5011 15 1 -3.3474 0.0124 -4.8013 16 1 -3.1714 -1.2836 -6.8432 17 1 -2.6371 -2.3044 -4.7094 18 6 3.8136 -0.5171 -3.8492 19 6 4.2732 0.7682 -3.6307 20 6 5.6103 1.0652 -3.8172 21 6 6.4863 0.0787 -4.2299 22 6 6.0257 -1.2053 -4.4534 23 6 4.6893 -1.5032 -4.2633 24 7 2.0197 -0.6924 1.1995 25 6 1.8122 0.1260 2.4015 26 6 1.3847 -2.0093 1.3433 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.4260 0.7082 -2.5284 31 1 1.5985 0.7044 -4.9363 32 1 1.9738 -0.8274 -5.7618 33 1 -1.0732 0.3710 -7.4481 34 1 3.5882 1.5396 -3.3110 35 1 5.9701 2.0685 -3.6429 36 1 7.5305 0.3113 -4.3781 37 1 6.7101 -1.9760 -4.7763 38 1 4.3296 -2.5065 -4.4376 39 1 0.7435 0.2448 2.5802 40 1 2.2717 -0.3650 3.2592 41 1 2.2674 1.1058 2.2569 42 1 1.6126 -2.6200 0.4696 43 1 1.7654 -2.5004 2.2387 44 1 0.3051 -1.8847 1.4278 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602129565.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:28 Heat of formation + Delta-G solvation = -28.235439 kcal Electronic energy + Delta-G solvation = -23749.368550 eV Core-core repulsion = 20472.706871 eV Total energy + Delta-G solvation = -3276.661679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.28138 -39.99351 -38.12261 -36.61969 -34.72548 -32.99726 -31.72604 -31.18342 -30.44207 -28.45051 -26.95471 -26.24468 -23.82524 -23.54388 -23.04797 -21.28877 -20.74223 -18.66842 -18.02869 -17.73086 -17.22084 -16.58314 -16.49399 -16.11038 -15.81851 -15.44563 -15.26754 -15.08234 -14.53676 -14.49295 -14.17569 -14.06972 -13.67521 -13.60806 -13.41109 -13.17448 -12.98433 -12.82055 -12.71453 -12.63168 -12.48226 -12.36637 -12.19831 -12.12632 -11.84858 -11.57649 -11.32126 -10.65712 -10.49840 -9.91373 -9.73535 -9.49983 -9.20212 -8.19920 -6.29801 0.53168 0.57785 1.38204 1.40728 1.50555 1.80201 2.26596 2.39615 2.98037 3.12180 3.15964 3.81792 3.98369 4.04139 4.05166 4.12643 4.22586 4.33403 4.39910 4.40417 4.47804 4.64527 4.66824 4.67525 4.73384 4.78345 4.80351 4.84800 5.04704 5.11930 5.15094 5.18480 5.21750 5.32977 5.44613 5.62696 5.64308 5.66079 5.78706 5.91096 5.99021 6.15317 6.17276 6.21974 6.78756 6.82761 7.38730 7.45629 8.90867 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.008929 B = 0.007153 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.974412 B = 3913.557838 C = 6411.654493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.125 0.875 4 C 0.514 3.486 5 O -0.572 6.572 6 N -0.697 5.697 7 C 0.203 3.797 8 H 0.054 0.946 9 C 0.039 3.961 10 C -0.526 4.526 11 H 0.053 0.947 12 C 0.011 3.989 13 N -0.926 5.926 14 Si 0.955 3.045 15 H -0.268 1.268 16 H -0.285 1.285 17 H -0.273 1.273 18 C -0.098 4.098 19 C -0.120 4.120 20 C -0.124 4.124 21 C -0.130 4.130 22 C -0.124 4.124 23 C -0.134 4.134 24 N -0.544 5.544 25 C 0.024 3.976 26 C 0.019 3.981 27 H 0.090 0.910 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.407 0.593 31 H 0.013 0.987 32 H 0.001 0.999 33 H 0.264 0.736 34 H 0.122 0.878 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.039 0.961 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.818 4.007 13.683 15.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.041 4.041 3 H 0.142 0.858 4 C 0.300 3.700 5 O -0.451 6.451 6 N -0.347 5.347 7 C 0.098 3.902 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.564 4.564 11 H 0.071 0.929 12 C -0.188 4.188 13 N -0.566 5.566 14 Si 0.780 3.220 15 H -0.193 1.193 16 H -0.211 1.211 17 H -0.198 1.198 18 C -0.099 4.099 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.148 4.148 22 C -0.142 4.142 23 C -0.153 4.153 24 N -0.267 5.267 25 C -0.123 4.123 26 C -0.129 4.129 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.070 0.930 30 H 0.242 0.758 31 H 0.031 0.969 32 H 0.019 0.981 33 H 0.072 0.928 34 H 0.140 0.860 35 H 0.165 0.835 36 H 0.169 0.831 37 H 0.160 0.840 38 H 0.128 0.872 39 H 0.057 0.943 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 7.644 3.235 13.548 15.888 hybrid contribution -2.165 -0.086 -0.497 2.223 sum 5.479 3.149 13.051 14.501 Atomic orbital electron populations 1.22341 0.94053 1.02805 1.04377 1.21627 0.95028 0.98941 0.88506 0.85758 1.21025 0.78238 0.85624 0.85067 1.90585 1.44407 1.23384 1.86691 1.45848 1.59370 1.24279 1.05160 1.19659 0.88885 0.95827 0.85868 0.92779 1.19126 0.93646 0.95990 0.91127 1.21372 0.94396 1.35612 1.05036 0.92857 1.25769 1.02972 0.95143 0.94867 1.70073 1.36073 1.40706 1.09720 0.85603 0.80147 0.78850 0.77381 1.19283 1.21064 1.19796 1.20468 0.95681 0.94901 0.98829 1.21071 0.96719 0.95508 1.00559 1.21442 0.92791 1.00608 0.99367 1.21462 1.00894 0.92773 0.99647 1.21375 0.94760 0.98058 1.00029 1.21164 0.94584 0.98864 1.00701 1.61838 1.58464 1.03980 1.02461 1.22501 1.00386 0.98081 0.91351 1.22514 0.96718 0.90908 1.02787 0.89151 0.90953 0.92991 0.75778 0.96894 0.98064 0.92754 0.86012 0.83525 0.83138 0.83978 0.87176 0.94297 0.90412 0.90258 0.92390 0.90639 0.94606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.20 8.37 71.98 0.60 -3.60 16 2 C 0.07 1.89 2.71 44.17 0.12 2.00 16 3 H 0.12 2.70 7.94 -2.39 -0.02 2.68 16 4 C 0.51 18.52 6.90 87.66 0.61 19.12 16 5 O -0.57 -25.01 13.83 -3.04 -0.04 -25.05 16 6 N -0.70 -25.59 4.04 -446.10 -1.80 -27.39 16 7 C 0.20 8.73 2.11 44.24 0.09 8.82 16 8 H 0.05 2.63 7.44 -2.39 -0.02 2.61 16 9 C 0.04 1.94 4.49 29.85 0.13 2.07 16 10 C -0.53 -28.36 8.84 25.60 0.23 -28.14 16 11 H 0.05 2.87 7.74 -2.91 -0.02 2.84 16 12 C 0.01 0.61 5.46 84.66 0.46 1.07 16 13 N -0.93 -53.81 13.29 21.45 0.28 -53.53 16 14 Si 0.95 43.06 29.54 68.60 2.03 45.09 16 15 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 16 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 C -0.10 -3.81 4.91 -19.87 -0.10 -3.90 16 19 C -0.12 -4.07 9.32 22.27 0.21 -3.86 16 20 C -0.12 -3.47 10.05 22.27 0.22 -3.25 16 21 C -0.13 -3.42 10.05 22.27 0.22 -3.20 16 22 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 23 C -0.13 -4.95 9.67 22.27 0.22 -4.73 16 24 N -0.54 -14.29 4.73 -927.73 -4.38 -18.67 16 25 C 0.02 0.43 9.32 127.69 1.19 1.62 16 26 C 0.02 0.50 8.61 127.69 1.10 1.60 16 27 H 0.09 1.64 6.92 -2.39 -0.02 1.63 16 28 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 29 H 0.05 1.40 6.31 -2.39 -0.02 1.38 16 30 H 0.41 13.46 8.60 -92.71 -0.80 12.66 16 31 H 0.01 0.66 8.14 -2.38 -0.02 0.64 16 32 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 34 H 0.12 3.82 7.73 -2.91 -0.02 3.80 16 35 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 36 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 38 H 0.11 4.07 8.04 -2.91 -0.02 4.05 16 39 H 0.04 0.60 6.97 -2.39 -0.02 0.59 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.22 7.99 -2.39 -0.02 1.20 16 42 H 0.06 2.00 5.81 -2.39 -0.01 1.99 16 43 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 0.87 6.19 -2.39 -0.01 0.85 16 Total: -1.00 -68.80 358.47 1.80 -67.00 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.18 Total: 30.38 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: 5.53 Total: -17.83 kcal Atomic # 7 Polarization: -93.69 SS G_CDS: -5.90 Total: -99.59 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.04 Total: -25.05 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -68.80 1.80 -67.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602129565.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.768 kcal (2) G-P(sol) polarization free energy of solvation -68.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds