Wall clock time and date at job start Tue Mar 31 2020 08:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47361 * 2 1 4 4 C 1.53004 * 109.46888 * 119.99899 * 2 1 3 5 5 C 1.50701 * 109.46875 * 294.99791 * 4 2 1 6 6 H 1.08000 * 120.00245 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99636 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00422 * 359.71951 * 7 5 4 9 9 Si 1.86801 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47264 * 269.71664 * 9 7 5 11 11 H 1.48491 * 109.47570 * 29.71986 * 9 7 5 12 12 H 1.48502 * 109.47219 * 149.72300 * 9 7 5 13 13 C 1.52997 * 109.47213 * 239.99461 * 2 1 3 14 14 N 1.46907 * 109.46895 * 64.99999 * 13 2 1 15 15 C 1.46906 * 110.99432 * 66.04920 * 14 13 2 16 16 C 1.50697 * 109.47279 * 64.44266 * 15 14 13 17 17 N 1.34782 * 119.99820 * 177.69853 * 16 15 14 18 18 O 1.21278 * 119.99900 * 357.70093 * 16 15 14 19 19 C 1.46894 * 110.99861 * 189.99701 * 14 13 2 20 20 C 1.50704 * 109.46909 * 163.76952 * 19 14 13 21 21 C 1.38234 * 120.00216 * 275.78337 * 20 19 14 22 22 C 1.38235 * 119.99867 * 179.76556 * 21 20 19 23 23 C 1.38232 * 120.00308 * 0.50764 * 22 21 20 24 24 C 1.38239 * 119.99703 * 359.74016 * 23 22 21 25 25 C 1.38234 * 120.00215 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.47319 * 59.99927 * 1 2 3 27 27 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47333 * 300.00633 * 1 2 3 29 29 H 1.09001 * 109.47249 * 175.00116 * 4 2 1 30 30 H 1.08993 * 109.47374 * 54.99773 * 4 2 1 31 31 H 0.97002 * 119.99644 * 0.27952 * 8 7 5 32 32 H 1.08998 * 109.47174 * 184.99819 * 13 2 1 33 33 H 1.08994 * 109.47255 * 305.00634 * 13 2 1 34 34 H 1.09006 * 109.46406 * 184.44332 * 15 14 13 35 35 H 1.08999 * 109.47157 * 304.43706 * 15 14 13 36 36 H 0.97003 * 120.00146 * 359.97438 * 17 16 15 37 37 H 0.96998 * 119.99926 * 180.02562 * 17 16 15 38 38 H 1.08992 * 109.47903 * 283.76860 * 19 14 13 39 39 H 1.09001 * 109.47410 * 43.77452 * 19 14 13 40 40 H 1.08001 * 119.99570 * 359.97438 * 21 20 19 41 41 H 1.08007 * 119.99713 * 180.22383 * 22 21 20 42 42 H 1.08003 * 120.00104 * 179.72540 * 23 22 21 43 43 H 1.07998 * 119.99684 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00212 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6719 -1.5213 3.8515 9 14 1.4983 0.5629 5.2496 10 1 2.5661 1.5385 5.5862 11 1 0.2302 1.2887 4.9849 12 1 1.3055 -0.3718 6.3873 13 6 2.0400 -0.7214 -1.2491 14 7 1.6513 0.0373 -2.4456 15 6 2.3342 1.3373 -2.4894 16 6 3.8190 1.1203 -2.6277 17 7 4.6475 2.1780 -2.7352 18 8 4.2686 -0.0060 -2.6422 19 6 1.9125 -0.7359 -3.6670 20 6 1.1571 -0.1252 -4.8192 21 6 -0.1675 -0.4587 -5.0316 22 6 -0.8618 0.1052 -6.0856 23 6 -0.2285 0.9945 -6.9335 24 6 1.0976 1.3241 -6.7241 25 6 1.7905 0.7639 -5.6673 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9285 -2.0223 3.0616 32 1 3.1263 -0.7995 -1.2055 33 1 1.6053 -1.7198 -1.2950 34 1 1.9697 1.9104 -3.3420 35 1 2.1311 1.8855 -1.5695 36 1 4.2879 3.0789 -2.7240 37 1 5.6032 2.0384 -2.8246 38 1 2.9804 -0.7220 -3.8846 39 1 1.5845 -1.7653 -3.5225 40 1 -0.6609 -1.1572 -4.3720 41 1 -1.8977 -0.1526 -6.2494 42 1 -0.7697 1.4317 -7.7596 43 1 1.5925 2.0186 -7.3868 44 1 2.8266 1.0211 -5.5040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602472601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:50 Heat of formation + Delta-G solvation = -22.109099 kcal Electronic energy + Delta-G solvation = -23497.190246 eV Core-core repulsion = 20220.794225 eV Total energy + Delta-G solvation = -3276.396021 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.37627 -39.03264 -36.90455 -34.59799 -33.74074 -32.36239 -31.15481 -30.94622 -27.98736 -26.57731 -26.07748 -23.76994 -22.59922 -22.22809 -21.39922 -20.27568 -19.08397 -17.26008 -16.97665 -16.78603 -16.62250 -15.73845 -15.32244 -15.25396 -14.64690 -14.35919 -14.12896 -13.70556 -13.50466 -13.45748 -13.24538 -12.83566 -12.59111 -11.90996 -11.77792 -11.66746 -11.44472 -11.23029 -11.10738 -10.98047 -10.89331 -10.59922 -10.42472 -10.19819 -10.07187 -9.70764 -9.56582 -9.39668 -8.98090 -8.81670 -8.41652 -8.24827 -7.90550 -6.27749 -3.95597 1.28219 1.34460 2.60398 3.46137 3.50338 3.54696 3.65558 3.66240 4.24012 4.60283 4.78715 4.80584 4.92449 4.97193 5.04740 5.21914 5.34845 5.43639 5.47204 5.49673 5.62957 5.77269 5.86248 5.97727 6.00721 6.08035 6.19202 6.36302 6.39192 6.43596 6.53509 6.61295 6.66172 6.75122 6.91653 6.94990 7.01423 7.16209 7.19321 7.30305 7.36477 7.51030 7.66605 8.23013 8.32151 8.55561 8.97559 9.76112 11.12719 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.003751 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.407334 B = 7462.898462 C = 8113.319048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.072 4.072 3 H 0.052 0.948 4 C 0.015 3.985 5 C -0.592 4.592 6 H 0.049 0.951 7 C 0.012 3.988 8 N -0.917 5.917 9 Si 1.069 2.931 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.285 1.285 13 C 0.044 3.956 14 N -0.500 5.500 15 C 0.027 3.973 16 C 0.487 3.513 17 N -0.858 5.858 18 O -0.537 6.537 19 C 0.070 3.930 20 C -0.067 4.067 21 C -0.097 4.097 22 C -0.121 4.121 23 C -0.127 4.127 24 C -0.123 4.123 25 C -0.119 4.119 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.053 0.947 29 H 0.003 0.997 30 H 0.007 0.993 31 H 0.269 0.731 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.400 0.600 37 H 0.396 0.604 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.123 0.877 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.334 8.298 -21.464 23.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.023 4.023 5 C -0.631 4.631 6 H 0.068 0.932 7 C -0.192 4.192 8 N -0.553 5.553 9 Si 0.898 3.102 10 H -0.216 1.216 11 H -0.215 1.215 12 H -0.211 1.211 13 C -0.083 4.083 14 N -0.222 5.222 15 C -0.105 4.105 16 C 0.272 3.728 17 N -0.422 5.422 18 O -0.415 6.415 19 C -0.057 4.057 20 C -0.068 4.068 21 C -0.116 4.116 22 C -0.139 4.139 23 C -0.145 4.145 24 C -0.141 4.141 25 C -0.137 4.137 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.021 0.979 30 H 0.025 0.975 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.118 0.882 35 H 0.131 0.869 36 H 0.228 0.772 37 H 0.226 0.774 38 H 0.092 0.908 39 H 0.098 0.902 40 H 0.141 0.859 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.682 7.559 -19.752 21.318 hybrid contribution 1.068 0.345 -1.748 2.077 sum -1.614 7.904 -21.500 22.963 Atomic orbital electron populations 1.21591 0.95639 1.00549 1.00218 1.21087 0.95952 0.98597 0.93483 0.92988 1.19236 0.95148 0.95619 0.92276 1.22050 1.38544 1.10213 0.92269 0.93249 1.25811 0.94830 0.97175 1.01340 1.70737 1.36322 1.14700 1.33575 0.83541 0.75908 0.75238 0.75477 1.21648 1.21509 1.21097 1.22614 1.00315 0.96816 0.88514 1.62439 1.54417 1.02924 1.02372 1.22435 0.87265 0.95704 1.05101 1.22291 0.91122 0.84837 0.74577 1.44093 1.11017 1.09583 1.77492 1.90672 1.78350 1.23023 1.49439 1.21393 0.99646 0.96947 0.87754 1.19946 0.94442 0.96607 0.95765 1.21091 0.93825 0.99667 0.97000 1.21161 0.99793 0.97509 0.95487 1.21095 0.95039 0.98705 0.99699 1.21067 0.94808 1.00270 0.97967 1.21038 0.99562 0.97575 0.95549 0.93777 0.94269 0.92758 0.97923 0.97514 0.92090 0.92247 0.91410 0.88159 0.86923 0.77176 0.77361 0.90776 0.90176 0.85889 0.86272 0.86480 0.86474 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.89 37.16 0.33 -2.09 16 2 C -0.07 -1.51 2.26 -90.62 -0.20 -1.72 16 3 H 0.05 1.09 6.25 -51.93 -0.32 0.76 16 4 C 0.01 0.39 3.76 -27.88 -0.10 0.28 16 5 C -0.59 -16.97 8.41 -34.44 -0.29 -17.26 16 6 H 0.05 1.39 7.06 -52.49 -0.37 1.02 16 7 C 0.01 0.34 5.46 -17.82 -0.10 0.25 16 8 N -0.92 -28.79 13.65 55.43 0.76 -28.03 16 9 Si 1.07 25.78 29.90 -169.99 -5.08 20.69 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.04 0.81 4.06 -3.82 -0.02 0.80 16 14 N -0.50 -7.53 4.11 -237.52 -0.98 -8.50 16 15 C 0.03 0.35 5.45 -4.97 -0.03 0.32 16 16 C 0.49 6.62 7.32 -10.98 -0.08 6.53 16 17 N -0.86 -8.03 8.87 31.22 0.28 -7.75 16 18 O -0.54 -9.41 12.55 5.56 0.07 -9.34 16 19 C 0.07 0.98 4.78 -4.98 -0.02 0.95 16 20 C -0.07 -0.82 4.90 -104.62 -0.51 -1.34 16 21 C -0.10 -1.14 9.73 -39.58 -0.38 -1.52 16 22 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 23 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.31 8.57 -39.58 -0.34 -1.65 16 26 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 29 H 0.00 0.07 8.01 -51.93 -0.42 -0.35 16 30 H 0.01 0.18 8.00 -51.93 -0.42 -0.23 16 31 H 0.27 8.47 7.22 -40.82 -0.29 8.17 16 32 H 0.06 1.22 5.57 -51.93 -0.29 0.93 16 33 H 0.07 1.27 7.86 -51.93 -0.41 0.86 16 34 H 0.10 1.10 6.70 -51.93 -0.35 0.75 16 35 H 0.11 1.51 6.19 -51.93 -0.32 1.19 16 36 H 0.40 2.49 8.83 -40.82 -0.36 2.13 16 37 H 0.40 3.40 8.93 -40.82 -0.36 3.04 16 38 H 0.07 1.13 5.14 -51.93 -0.27 0.87 16 39 H 0.08 1.13 7.78 -51.93 -0.40 0.72 16 40 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 41 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 42 H 0.12 0.85 8.06 -52.48 -0.42 0.42 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.11 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 350.81 15.07 5.29 5.29 Total: -1.00 -34.04 350.81 -9.29 -43.33 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -6.68 Total: 5.56 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: -2.94 Total: -21.26 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.06 Total: -44.28 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.34 kcal Atomic # 14 Polarization: 25.78 SS G_CDS: -5.08 Total: 20.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.04 -9.29 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602472601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.220 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds