Wall clock time and date at job start Tue Mar 31 2020 08:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47361 * 2 1 4 4 C 1.53004 * 109.46888 * 119.99899 * 2 1 3 5 5 C 1.50701 * 109.46875 * 294.99791 * 4 2 1 6 6 H 1.08000 * 120.00245 * 359.97438 * 5 4 2 7 7 C 1.37880 * 119.99636 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00422 * 359.71951 * 7 5 4 9 9 Si 1.86801 * 119.99647 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47264 * 269.71664 * 9 7 5 11 11 H 1.48491 * 109.47570 * 29.71986 * 9 7 5 12 12 H 1.48502 * 109.47219 * 149.72300 * 9 7 5 13 13 C 1.52997 * 109.47213 * 239.99461 * 2 1 3 14 14 N 1.46907 * 109.46895 * 64.99999 * 13 2 1 15 15 C 1.46906 * 110.99432 * 66.04920 * 14 13 2 16 16 C 1.50697 * 109.47279 * 64.44266 * 15 14 13 17 17 N 1.34782 * 119.99820 * 177.69853 * 16 15 14 18 18 O 1.21278 * 119.99900 * 357.70093 * 16 15 14 19 19 C 1.46894 * 110.99861 * 189.99701 * 14 13 2 20 20 C 1.50704 * 109.46909 * 163.76952 * 19 14 13 21 21 C 1.38234 * 120.00216 * 275.78337 * 20 19 14 22 22 C 1.38235 * 119.99867 * 179.76556 * 21 20 19 23 23 C 1.38232 * 120.00308 * 0.50764 * 22 21 20 24 24 C 1.38239 * 119.99703 * 359.74016 * 23 22 21 25 25 C 1.38234 * 120.00215 * 0.02562 * 24 23 22 26 26 H 1.09005 * 109.47319 * 59.99927 * 1 2 3 27 27 H 1.08995 * 109.47407 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47333 * 300.00633 * 1 2 3 29 29 H 1.09001 * 109.47249 * 175.00116 * 4 2 1 30 30 H 1.08993 * 109.47374 * 54.99773 * 4 2 1 31 31 H 0.97002 * 119.99644 * 0.27952 * 8 7 5 32 32 H 1.08998 * 109.47174 * 184.99819 * 13 2 1 33 33 H 1.08994 * 109.47255 * 305.00634 * 13 2 1 34 34 H 1.09006 * 109.46406 * 184.44332 * 15 14 13 35 35 H 1.08999 * 109.47157 * 304.43706 * 15 14 13 36 36 H 0.97003 * 120.00146 * 359.97438 * 17 16 15 37 37 H 0.96998 * 119.99926 * 180.02562 * 17 16 15 38 38 H 1.08992 * 109.47903 * 283.76860 * 19 14 13 39 39 H 1.09001 * 109.47410 * 43.77452 * 19 14 13 40 40 H 1.08001 * 119.99570 * 359.97438 * 21 20 19 41 41 H 1.08007 * 119.99713 * 180.22383 * 22 21 20 42 42 H 1.08003 * 120.00104 * 179.72540 * 23 22 21 43 43 H 1.07998 * 119.99684 * 179.97438 * 24 23 22 44 44 H 1.07992 * 120.00212 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4766 6 1 1.0806 0.9747 2.3756 7 6 1.9931 -0.4016 3.7283 8 7 2.6719 -1.5213 3.8515 9 14 1.4983 0.5629 5.2496 10 1 2.5661 1.5385 5.5862 11 1 0.2302 1.2887 4.9849 12 1 1.3055 -0.3718 6.3873 13 6 2.0400 -0.7214 -1.2491 14 7 1.6513 0.0373 -2.4456 15 6 2.3342 1.3373 -2.4894 16 6 3.8190 1.1203 -2.6277 17 7 4.6475 2.1780 -2.7352 18 8 4.2686 -0.0060 -2.6422 19 6 1.9125 -0.7359 -3.6670 20 6 1.1571 -0.1252 -4.8192 21 6 -0.1675 -0.4587 -5.0316 22 6 -0.8618 0.1052 -6.0856 23 6 -0.2285 0.9945 -6.9335 24 6 1.0976 1.3241 -6.7241 25 6 1.7905 0.7639 -5.6673 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 3.1263 -0.7995 1.2057 30 1 1.6053 -1.7197 1.2953 31 1 2.9285 -2.0223 3.0616 32 1 3.1263 -0.7995 -1.2055 33 1 1.6053 -1.7198 -1.2950 34 1 1.9697 1.9104 -3.3420 35 1 2.1311 1.8855 -1.5695 36 1 4.2879 3.0789 -2.7240 37 1 5.6032 2.0384 -2.8246 38 1 2.9804 -0.7220 -3.8846 39 1 1.5845 -1.7653 -3.5225 40 1 -0.6609 -1.1572 -4.3720 41 1 -1.8977 -0.1526 -6.2494 42 1 -0.7697 1.4317 -7.7596 43 1 1.5925 2.0186 -7.3868 44 1 2.8266 1.0211 -5.5040 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602472601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:01:48 Heat of formation + Delta-G solvation = -45.541726 kcal Electronic energy + Delta-G solvation = -23498.206361 eV Core-core repulsion = 20220.794225 eV Total energy + Delta-G solvation = -3277.412136 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -41.49208 -39.89123 -38.31718 -36.28308 -34.75286 -34.22856 -32.27082 -31.74039 -29.16913 -28.48063 -27.47934 -25.47447 -23.86801 -23.38495 -22.38440 -21.41063 -20.63460 -18.90874 -18.24981 -18.01266 -17.44225 -17.03693 -16.32939 -16.21823 -16.05606 -15.61306 -15.44986 -15.36551 -15.08532 -14.83949 -14.21892 -13.91161 -13.70425 -13.51061 -13.44245 -12.99380 -12.88078 -12.79750 -12.58362 -12.42916 -12.10727 -11.93107 -11.80834 -11.72165 -11.62095 -11.42357 -11.29956 -10.61789 -10.54784 -10.51846 -9.77101 -9.66061 -9.15297 -8.65304 -6.34433 0.46508 0.55627 1.52205 1.53777 1.62273 1.79432 2.58041 2.61640 2.73391 3.15243 3.19402 3.81461 3.94918 3.98690 4.06712 4.19618 4.21365 4.27833 4.34805 4.42846 4.51011 4.53473 4.68251 4.71243 4.81728 4.85527 4.91393 4.97271 5.08356 5.15807 5.21549 5.32727 5.38296 5.46855 5.60029 5.62979 5.67260 5.76322 5.86913 5.92005 5.99073 6.07434 6.17433 6.22766 6.41961 6.60947 7.29606 7.47931 8.74837 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.021510 B = 0.003751 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.407334 B = 7462.898462 C = 8113.319048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.062 4.062 3 H 0.057 0.943 4 C 0.018 3.982 5 C -0.601 4.601 6 H 0.057 0.943 7 C -0.046 4.046 8 N -0.944 5.944 9 Si 1.120 2.880 10 H -0.273 1.273 11 H -0.265 1.265 12 H -0.286 1.286 13 C 0.060 3.940 14 N -0.496 5.496 15 C 0.028 3.972 16 C 0.483 3.517 17 N -0.836 5.836 18 O -0.583 6.583 19 C 0.077 3.923 20 C -0.082 4.082 21 C -0.113 4.113 22 C -0.125 4.125 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.125 4.125 26 H 0.072 0.928 27 H 0.032 0.968 28 H 0.039 0.961 29 H -0.028 1.028 30 H -0.018 1.018 31 H 0.252 0.748 32 H 0.035 0.965 33 H 0.058 0.942 34 H 0.128 0.872 35 H 0.113 0.887 36 H 0.418 0.582 37 H 0.403 0.597 38 H 0.061 0.939 39 H 0.069 0.931 40 H 0.118 0.882 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.142 0.858 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 11.113 -23.058 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 H 0.075 0.925 4 C -0.019 4.019 5 C -0.638 4.638 6 H 0.075 0.925 7 C -0.242 4.242 8 N -0.582 5.582 9 Si 0.941 3.059 10 H -0.198 1.198 11 H -0.189 1.189 12 H -0.212 1.212 13 C -0.068 4.068 14 N -0.217 5.217 15 C -0.104 4.104 16 C 0.267 3.733 17 N -0.400 5.400 18 O -0.464 6.464 19 C -0.050 4.050 20 C -0.082 4.082 21 C -0.131 4.131 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.143 4.143 26 H 0.091 0.909 27 H 0.051 0.949 28 H 0.058 0.942 29 H -0.009 1.009 30 H 0.001 0.999 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.146 0.854 35 H 0.130 0.870 36 H 0.250 0.750 37 H 0.234 0.766 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.136 0.864 41 H 0.156 0.844 42 H 0.162 0.838 43 H 0.160 0.840 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.026 10.433 -21.387 24.135 hybrid contribution 1.513 -0.501 -1.370 2.102 sum -2.513 9.933 -22.757 24.957 Atomic orbital electron populations 1.21474 0.94220 1.00349 1.00780 1.20902 0.96896 0.98165 0.92081 0.92514 1.19165 0.93150 0.94898 0.94709 1.22433 1.37902 1.10394 0.93111 0.92482 1.27485 0.94058 0.97243 1.05396 1.70887 1.38421 1.16138 1.32717 0.82908 0.77049 0.74333 0.71577 1.19846 1.18938 1.21157 1.22233 0.98528 0.96616 0.89376 1.62380 1.54558 1.03332 1.01429 1.22516 0.87052 0.94637 1.06196 1.22340 0.91710 0.84861 0.74348 1.43873 1.11074 1.09657 1.75434 1.90668 1.78995 1.24946 1.51788 1.21273 0.99164 0.96622 0.87932 1.19785 0.94788 0.97910 0.95743 1.21170 0.93801 1.00230 0.97922 1.21425 1.00729 0.97263 0.94882 1.21468 0.95087 0.97861 0.99907 1.21378 0.95008 1.00087 0.97528 1.21114 0.99792 0.97515 0.95916 0.90948 0.94884 0.94215 1.00926 0.99945 0.93903 0.94635 0.92336 0.85423 0.86967 0.75044 0.76573 0.92136 0.91234 0.86361 0.84379 0.83788 0.83988 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.32 8.89 71.98 0.64 -3.68 16 2 C -0.06 -2.62 2.26 -10.79 -0.02 -2.64 16 3 H 0.06 2.35 6.25 -2.39 -0.01 2.34 16 4 C 0.02 1.00 3.76 29.85 0.11 1.11 16 5 C -0.60 -34.86 8.41 25.60 0.22 -34.64 16 6 H 0.06 3.17 7.06 -2.91 -0.02 3.15 16 7 C -0.05 -2.71 5.46 84.66 0.46 -2.25 16 8 N -0.94 -60.96 13.65 21.45 0.29 -60.67 16 9 Si 1.12 51.32 29.90 68.60 2.05 53.37 16 10 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 11 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 12 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 13 C 0.06 2.30 4.06 86.30 0.35 2.65 16 14 N -0.50 -14.87 4.11 -905.37 -3.72 -18.59 16 15 C 0.03 0.68 5.45 85.55 0.47 1.15 16 16 C 0.48 12.90 7.32 87.66 0.64 13.54 16 17 N -0.84 -14.38 8.87 -173.53 -1.54 -15.92 16 18 O -0.58 -21.00 12.55 -3.02 -0.04 -21.04 16 19 C 0.08 2.19 4.78 85.56 0.41 2.60 16 20 C -0.08 -1.94 4.90 -19.86 -0.10 -2.03 16 21 C -0.11 -2.50 9.73 22.27 0.22 -2.28 16 22 C -0.13 -2.23 10.05 22.27 0.22 -2.00 16 23 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 24 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 25 C -0.12 -2.51 8.57 22.27 0.19 -2.32 16 26 H 0.07 2.40 7.75 -2.38 -0.02 2.38 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.64 6.95 -2.38 -0.02 1.62 16 29 H -0.03 -1.66 8.01 -2.39 -0.02 -1.68 16 30 H -0.02 -1.05 8.00 -2.39 -0.02 -1.07 16 31 H 0.25 16.68 7.22 -92.71 -0.67 16.01 16 32 H 0.04 1.55 5.57 -2.39 -0.01 1.53 16 33 H 0.06 2.30 7.86 -2.39 -0.02 2.29 16 34 H 0.13 2.48 6.70 -2.38 -0.02 2.46 16 35 H 0.11 2.82 6.19 -2.39 -0.01 2.81 16 36 H 0.42 4.19 8.83 -92.71 -0.82 3.37 16 37 H 0.40 6.39 8.93 -92.71 -0.83 5.57 16 38 H 0.06 1.92 5.14 -2.39 -0.01 1.90 16 39 H 0.07 2.06 7.78 -2.39 -0.02 2.04 16 40 H 0.12 2.64 8.06 -2.91 -0.02 2.61 16 41 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 42 H 0.14 1.44 8.06 -2.91 -0.02 1.41 16 43 H 0.14 1.55 8.06 -2.91 -0.02 1.53 16 44 H 0.12 2.21 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -75.94 350.81 0.76 -75.17 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -0.53 Total: 21.93 kcal Atomic # 6 Polarization: -38.50 SS G_CDS: 4.25 Total: -34.25 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -4.97 Total: -95.18 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: -0.04 Total: -21.04 kcal Atomic # 14 Polarization: 51.32 SS G_CDS: 2.05 Total: 53.37 kcal Total: -75.94 0.76 -75.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602472601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.633 kcal (2) G-P(sol) polarization free energy of solvation -75.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds