Wall clock time and date at job start Tue Mar 31 2020 06:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47259 * 2 1 4 4 O 1.21298 * 120.00099 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00408 * 180.02562 * 3 2 1 6 6 C 1.40146 * 120.00045 * 185.27556 * 5 3 2 7 7 C 1.38852 * 119.99813 * 33.30878 * 6 5 3 8 8 C 1.38053 * 120.00512 * 180.02562 * 7 6 5 9 9 C 1.38887 * 119.99773 * 359.97438 * 8 7 6 10 10 N 1.39893 * 120.00734 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00357 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47317 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47288 * 305.00965 * 12 11 10 14 14 C 1.53004 * 109.46783 * 65.00551 * 12 11 10 15 15 C 1.52994 * 109.46977 * 185.00204 * 12 11 10 16 16 C 1.50699 * 109.46945 * 175.00474 * 15 12 11 17 17 H 1.08002 * 120.00083 * 359.97438 * 16 15 12 18 18 C 1.37885 * 119.99889 * 180.02562 * 16 15 12 19 19 N 1.31510 * 119.99662 * 179.72068 * 18 16 15 20 20 Si 1.86798 * 119.99985 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47201 * 269.72451 * 20 18 16 22 22 H 1.48503 * 109.47068 * 29.72601 * 20 18 16 23 23 H 1.48500 * 109.46893 * 149.72286 * 20 18 16 24 24 C 1.38894 * 119.98984 * 0.25598 * 9 8 7 25 25 C 1.38057 * 119.99246 * 359.53324 * 24 9 8 26 26 H 1.09004 * 109.47328 * 59.99365 * 1 2 3 27 27 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47258 * 299.99704 * 1 2 3 29 29 H 1.09007 * 109.46905 * 240.00608 * 2 1 3 30 30 H 1.09000 * 109.47703 * 120.00292 * 2 1 3 31 31 H 0.97000 * 119.99806 * 5.27725 * 5 3 2 32 32 H 1.07999 * 119.99488 * 359.97438 * 7 6 5 33 33 H 1.08006 * 120.00173 * 179.97438 * 8 7 6 34 34 H 0.97002 * 119.99941 * 0.02562 * 10 9 8 35 35 H 1.09009 * 109.46529 * 60.00467 * 11 10 9 36 36 H 1.08998 * 109.47059 * 300.00989 * 11 10 9 37 37 H 1.09000 * 109.47229 * 59.99596 * 14 12 11 38 38 H 1.08995 * 109.46874 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47124 * 299.99833 * 14 12 11 40 40 H 1.08994 * 109.47440 * 55.00590 * 15 12 11 41 41 H 1.09008 * 109.47324 * 295.00213 * 15 12 11 42 42 H 0.97003 * 120.00206 * 180.27578 * 19 18 16 43 43 H 1.07999 * 119.99726 * 179.72033 * 24 9 8 44 44 H 1.08000 * 119.99780 * 180.19158 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3428 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8255 2.9834 0.1111 7 6 3.1216 3.9085 0.8706 8 6 3.5823 5.2053 0.9801 9 6 4.7502 5.5845 0.3311 10 7 5.2169 6.8986 0.4416 11 6 6.4491 7.2983 -0.2426 12 6 6.7336 8.7748 0.0403 13 1 5.8666 9.3723 -0.2413 14 6 7.0197 8.9624 1.5316 15 6 7.9490 9.2248 -0.7727 16 6 8.1553 10.7064 -0.5896 17 1 7.4860 11.2706 0.0430 18 6 9.1977 11.3417 -1.2305 19 7 9.3743 12.6356 -1.0751 20 14 10.3547 10.3659 -2.3253 21 1 11.4939 9.8621 -1.5168 22 1 9.6236 9.2181 -2.9195 23 1 10.8664 11.2418 -3.4098 24 6 5.4516 4.6602 -0.4325 25 6 4.9929 3.3624 -0.5382 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.9871 0.9334 -0.0782 32 1 2.2133 3.6137 1.3749 33 1 3.0346 5.9249 1.5706 34 1 4.7250 7.5450 0.9718 35 1 6.3331 7.1495 -1.3162 36 1 7.2793 6.6926 0.1206 37 1 7.8866 8.3648 1.8132 38 1 7.2228 10.0142 1.7330 39 1 6.1537 8.6418 2.1108 40 1 7.7806 9.0092 -1.8277 41 1 8.8344 8.6896 -0.4292 42 1 10.1053 13.0834 -1.5291 43 1 6.3573 4.9562 -0.9409 44 1 5.5398 2.6429 -1.1294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602490332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:24 Heat of formation + Delta-G solvation = -29.226990 kcal Electronic energy + Delta-G solvation = -21948.548948 eV Core-core repulsion = 18671.844272 eV Total energy + Delta-G solvation = -3276.704676 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.59882 -38.96940 -36.86216 -35.05511 -33.51194 -32.95376 -31.91220 -30.89776 -28.57493 -27.31904 -25.94744 -24.58790 -23.19138 -22.26183 -21.44094 -20.24771 -19.30353 -17.87135 -17.32365 -16.96415 -16.76188 -16.05541 -15.37241 -14.75492 -14.53323 -14.30805 -14.09168 -13.85875 -13.61498 -13.33927 -13.20213 -12.99658 -12.72874 -12.40552 -12.31985 -12.25046 -12.12124 -11.76638 -11.55844 -11.19995 -11.10079 -10.97599 -10.64137 -10.48391 -10.03063 -9.96197 -9.79705 -9.62668 -9.18018 -9.14790 -8.86323 -8.56668 -7.01439 -6.06820 -4.04768 1.45164 1.53698 2.45345 2.90340 3.28321 3.36316 3.38959 3.69896 3.95369 4.35215 4.42468 4.65800 4.68805 4.90200 5.05147 5.12704 5.26182 5.37629 5.39709 5.42344 5.53822 5.55446 5.56452 5.61664 5.79099 5.85641 5.96552 6.09370 6.10180 6.27910 6.29386 6.35048 6.45912 6.53575 6.66807 6.81224 6.95881 6.98881 7.18452 7.24564 7.34890 7.52456 7.75906 7.92944 7.97035 8.50462 8.97583 9.55295 11.06365 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.040501 B = 0.002372 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.178027 B =11801.519570 C =12213.328703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.143 4.143 3 C 0.505 3.495 4 O -0.525 6.525 5 N -0.670 5.670 6 C 0.067 3.933 7 C -0.068 4.068 8 C -0.185 4.185 9 C 0.216 3.784 10 N -0.740 5.740 11 C 0.124 3.876 12 C -0.088 4.088 13 H 0.068 0.932 14 C -0.134 4.134 15 C -0.006 4.006 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.065 3.935 19 N -0.903 5.903 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.266 1.266 23 H -0.288 1.288 24 C -0.183 4.183 25 C -0.092 4.092 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.406 0.594 32 H 0.129 0.871 33 H 0.121 0.879 34 H 0.399 0.601 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.045 0.955 38 H 0.068 0.932 39 H 0.033 0.967 40 H 0.017 0.983 41 H 0.014 0.986 42 H 0.263 0.737 43 H 0.126 0.874 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.309 -26.536 3.303 29.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.183 4.183 3 C 0.293 3.707 4 O -0.400 6.400 5 N -0.315 5.315 6 C -0.027 4.027 7 C -0.088 4.088 8 C -0.209 4.209 9 C 0.110 3.890 10 N -0.368 5.368 11 C 0.000 4.000 12 C -0.107 4.107 13 H 0.087 0.913 14 C -0.191 4.191 15 C -0.044 4.044 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.136 4.136 19 N -0.542 5.542 20 Si 0.706 3.294 21 H -0.203 1.203 22 H -0.190 1.190 23 H -0.214 1.214 24 C -0.207 4.207 25 C -0.113 4.113 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.241 0.759 32 H 0.146 0.854 33 H 0.139 0.861 34 H 0.234 0.766 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.087 0.913 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.144 0.856 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.605 -25.700 3.151 28.797 hybrid contribution 0.981 -0.477 -0.511 1.205 sum -11.623 -26.176 2.640 28.762 Atomic orbital electron populations 1.21537 0.92830 1.01668 1.03539 1.21633 0.98865 0.93363 1.04422 1.20931 0.81865 0.92113 0.75812 1.90727 1.55080 1.46352 1.47865 1.43459 1.07446 1.07365 1.73236 1.17413 0.97456 0.85088 1.02792 1.20759 0.99196 0.92395 0.96461 1.20470 0.97599 0.96843 1.05946 1.17946 0.92212 0.85381 0.93430 1.44999 1.27816 1.08123 1.55899 1.21634 0.85296 0.97064 0.95989 1.21244 1.00722 0.91949 0.96747 0.91335 1.21732 0.99383 1.02939 0.95041 1.19566 0.92444 0.97549 0.94835 1.21088 1.13582 0.91340 1.29428 0.90828 1.25032 0.97452 0.94767 0.96318 1.69908 1.31622 1.08798 1.43853 0.86797 0.81425 0.80373 0.80794 1.20335 1.19018 1.21421 1.20472 1.02619 0.92747 1.04840 1.20572 0.96141 0.96039 0.98516 0.91875 0.92002 0.91886 0.88853 0.88749 0.75934 0.85365 0.86081 0.76595 0.92633 0.92651 0.93541 0.91255 0.94799 0.96473 0.96813 0.92742 0.85634 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.20 37.15 0.34 -0.52 16 2 C -0.14 -0.77 6.42 -27.89 -0.18 -0.95 16 3 C 0.51 4.88 7.57 -10.98 -0.08 4.80 16 4 O -0.52 -7.30 13.67 5.54 0.08 -7.22 16 5 N -0.67 -5.85 5.35 -9.81 -0.05 -5.90 16 6 C 0.07 0.79 6.28 -83.60 -0.53 0.26 16 7 C -0.07 -0.89 8.65 -39.42 -0.34 -1.23 16 8 C -0.19 -2.44 9.89 -39.41 -0.39 -2.83 16 9 C 0.22 2.98 6.66 -83.70 -0.56 2.43 16 10 N -0.74 -10.40 5.47 -58.58 -0.32 -10.72 16 11 C 0.12 1.93 4.30 -4.04 -0.02 1.92 16 12 C -0.09 -1.62 2.37 -90.62 -0.22 -1.84 16 13 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 14 C -0.13 -2.35 8.88 37.16 0.33 -2.02 16 15 C -0.01 -0.14 3.51 -27.89 -0.10 -0.24 16 16 C -0.52 -14.21 8.96 -34.44 -0.31 -14.52 16 17 H 0.07 2.17 7.30 -52.49 -0.38 1.79 16 18 C 0.07 1.87 5.47 -17.82 -0.10 1.78 16 19 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 20 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 C -0.18 -2.39 9.31 -39.41 -0.37 -2.76 16 25 C -0.09 -1.05 9.95 -39.42 -0.39 -1.44 16 26 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 27 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 29 H 0.09 0.32 8.14 -51.92 -0.42 -0.10 16 30 H 0.09 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.41 2.08 8.82 -40.82 -0.36 1.72 16 32 H 0.13 1.73 6.41 -52.49 -0.34 1.39 16 33 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 34 H 0.40 5.24 7.67 -40.82 -0.31 4.93 16 35 H 0.06 0.88 7.94 -51.92 -0.41 0.46 16 36 H 0.06 0.85 7.96 -51.93 -0.41 0.43 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 39 H 0.03 0.50 7.18 -51.93 -0.37 0.13 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.31 7.57 -51.92 -0.39 -0.09 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.13 1.58 6.73 -52.49 -0.35 1.23 16 44 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 357.14 15.07 5.38 5.38 Total: -1.00 -32.69 357.14 -8.75 -41.44 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -7.04 Total: 4.20 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -2.90 Total: -17.17 kcal Atomic # 7 Polarization: -43.75 SS G_CDS: 0.40 Total: -43.35 kcal Atomic # 8 Polarization: -7.30 SS G_CDS: 0.08 Total: -7.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.69 -8.75 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602490332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.209 kcal (2) G-P(sol) polarization free energy of solvation -32.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds