Wall clock time and date at job start Tue Mar 31 2020 06:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47259 * 2 1 4 4 O 1.21298 * 120.00099 * 0.02562 * 3 2 1 5 5 N 1.34779 * 120.00408 * 180.02562 * 3 2 1 6 6 C 1.40146 * 120.00045 * 185.27556 * 5 3 2 7 7 C 1.38852 * 119.99813 * 33.30878 * 6 5 3 8 8 C 1.38053 * 120.00512 * 180.02562 * 7 6 5 9 9 C 1.38887 * 119.99773 * 359.97438 * 8 7 6 10 10 N 1.39893 * 120.00734 * 179.97438 * 9 8 7 11 11 C 1.46500 * 120.00357 * 179.97438 * 10 9 8 12 12 C 1.53002 * 109.47317 * 180.02562 * 11 10 9 13 13 H 1.08993 * 109.47288 * 305.00965 * 12 11 10 14 14 C 1.53004 * 109.46783 * 65.00551 * 12 11 10 15 15 C 1.52994 * 109.46977 * 185.00204 * 12 11 10 16 16 C 1.50699 * 109.46945 * 175.00474 * 15 12 11 17 17 H 1.08002 * 120.00083 * 359.97438 * 16 15 12 18 18 C 1.37885 * 119.99889 * 180.02562 * 16 15 12 19 19 N 1.31510 * 119.99662 * 179.72068 * 18 16 15 20 20 Si 1.86798 * 119.99985 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.47201 * 269.72451 * 20 18 16 22 22 H 1.48503 * 109.47068 * 29.72601 * 20 18 16 23 23 H 1.48500 * 109.46893 * 149.72286 * 20 18 16 24 24 C 1.38894 * 119.98984 * 0.25598 * 9 8 7 25 25 C 1.38057 * 119.99246 * 359.53324 * 24 9 8 26 26 H 1.09004 * 109.47328 * 59.99365 * 1 2 3 27 27 H 1.09003 * 109.47464 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47258 * 299.99704 * 1 2 3 29 29 H 1.09007 * 109.46905 * 240.00608 * 2 1 3 30 30 H 1.09000 * 109.47703 * 120.00292 * 2 1 3 31 31 H 0.97000 * 119.99806 * 5.27725 * 5 3 2 32 32 H 1.07999 * 119.99488 * 359.97438 * 7 6 5 33 33 H 1.08006 * 120.00173 * 179.97438 * 8 7 6 34 34 H 0.97002 * 119.99941 * 0.02562 * 10 9 8 35 35 H 1.09009 * 109.46529 * 60.00467 * 11 10 9 36 36 H 1.08998 * 109.47059 * 300.00989 * 11 10 9 37 37 H 1.09000 * 109.47229 * 59.99596 * 14 12 11 38 38 H 1.08995 * 109.46874 * 179.97438 * 14 12 11 39 39 H 1.09003 * 109.47124 * 299.99833 * 14 12 11 40 40 H 1.08994 * 109.47440 * 55.00590 * 15 12 11 41 41 H 1.09008 * 109.47324 * 295.00213 * 15 12 11 42 42 H 0.97003 * 120.00206 * 180.27578 * 19 18 16 43 43 H 1.07999 * 119.99726 * 179.72033 * 24 9 8 44 44 H 1.08000 * 119.99780 * 180.19158 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2441 2.3428 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8255 2.9834 0.1111 7 6 3.1216 3.9085 0.8706 8 6 3.5823 5.2053 0.9801 9 6 4.7502 5.5845 0.3311 10 7 5.2169 6.8986 0.4416 11 6 6.4491 7.2983 -0.2426 12 6 6.7336 8.7748 0.0403 13 1 5.8666 9.3723 -0.2413 14 6 7.0197 8.9624 1.5316 15 6 7.9490 9.2248 -0.7727 16 6 8.1553 10.7064 -0.5896 17 1 7.4860 11.2706 0.0430 18 6 9.1977 11.3417 -1.2305 19 7 9.3743 12.6356 -1.0751 20 14 10.3547 10.3659 -2.3253 21 1 11.4939 9.8621 -1.5168 22 1 9.6236 9.2181 -2.9195 23 1 10.8664 11.2418 -3.4098 24 6 5.4516 4.6602 -0.4325 25 6 4.9929 3.3624 -0.5382 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 3.9871 0.9334 -0.0782 32 1 2.2133 3.6137 1.3749 33 1 3.0346 5.9249 1.5706 34 1 4.7250 7.5450 0.9718 35 1 6.3331 7.1495 -1.3162 36 1 7.2793 6.6926 0.1206 37 1 7.8866 8.3648 1.8132 38 1 7.2228 10.0142 1.7330 39 1 6.1537 8.6418 2.1108 40 1 7.7806 9.0092 -1.8277 41 1 8.8344 8.6896 -0.4292 42 1 10.1053 13.0834 -1.5291 43 1 6.3573 4.9562 -0.9409 44 1 5.5398 2.6429 -1.1294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602490332.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:19 Heat of formation + Delta-G solvation = -50.035515 kcal Electronic energy + Delta-G solvation = -21949.451273 eV Core-core repulsion = 18671.844272 eV Total energy + Delta-G solvation = -3277.607001 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.95 seconds Orbital eigenvalues (eV) -41.42177 -39.93121 -38.12947 -36.19474 -34.83122 -33.91664 -33.33747 -31.85470 -29.97643 -28.77486 -27.15289 -25.37558 -24.52463 -23.55846 -22.37162 -21.17063 -20.72481 -18.98646 -18.66690 -18.10969 -17.84624 -16.87877 -16.52639 -16.05373 -15.98241 -15.43324 -15.15885 -14.86500 -14.78806 -14.56482 -14.40516 -14.09801 -13.95817 -13.62761 -13.49261 -13.35912 -13.03858 -12.84308 -12.65519 -12.62171 -12.26048 -12.12335 -12.00012 -11.72647 -11.70187 -11.44331 -11.33167 -11.11003 -10.83309 -10.73912 -10.11575 -9.82963 -8.26102 -8.01432 -6.29002 0.51598 0.57291 1.37370 1.39394 1.50689 1.70809 2.22172 2.38172 2.59352 3.00134 3.09375 3.77294 3.97829 4.04826 4.10917 4.16101 4.23254 4.29778 4.32906 4.49113 4.59095 4.65806 4.74910 4.76370 4.83090 4.90605 5.00989 5.01702 5.08128 5.11760 5.15192 5.24593 5.35580 5.36551 5.40726 5.48629 5.51512 5.62224 5.64955 5.69868 6.02569 6.31281 6.47389 6.57891 6.78679 6.88341 7.27942 7.34597 8.90407 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.040501 B = 0.002372 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.178027 B =11801.519570 C =12213.328703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.133 4.133 3 C 0.498 3.502 4 O -0.575 6.575 5 N -0.659 5.659 6 C 0.066 3.934 7 C -0.084 4.084 8 C -0.192 4.192 9 C 0.199 3.801 10 N -0.742 5.742 11 C 0.140 3.860 12 C -0.082 4.082 13 H 0.056 0.944 14 C -0.127 4.127 15 C -0.005 4.005 16 C -0.520 4.520 17 H 0.035 0.965 18 C -0.001 4.001 19 N -0.954 5.954 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.243 1.243 23 H -0.289 1.289 24 C -0.192 4.192 25 C -0.088 4.088 26 H 0.043 0.957 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.122 0.878 30 H 0.122 0.878 31 H 0.426 0.574 32 H 0.119 0.881 33 H 0.126 0.874 34 H 0.401 0.599 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.036 0.964 39 H 0.061 0.939 40 H 0.021 0.979 41 H 0.023 0.977 42 H 0.264 0.736 43 H 0.132 0.868 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.666 -30.556 2.503 32.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.172 4.172 3 C 0.288 3.712 4 O -0.454 6.454 5 N -0.305 5.305 6 C -0.029 4.029 7 C -0.105 4.105 8 C -0.215 4.215 9 C 0.095 3.905 10 N -0.372 5.372 11 C 0.015 3.985 12 C -0.101 4.101 13 H 0.074 0.926 14 C -0.185 4.185 15 C -0.043 4.043 16 C -0.558 4.558 17 H 0.053 0.947 18 C -0.197 4.197 19 N -0.595 5.595 20 Si 0.772 3.228 21 H -0.192 1.192 22 H -0.167 1.167 23 H -0.215 1.215 24 C -0.215 4.215 25 C -0.109 4.109 26 H 0.062 0.938 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.264 0.736 32 H 0.137 0.863 33 H 0.144 0.856 34 H 0.237 0.763 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.070 0.930 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.962 -29.786 2.361 32.185 hybrid contribution 0.670 0.762 -0.200 1.034 sum -11.292 -29.024 2.160 31.218 Atomic orbital electron populations 1.21557 0.93769 1.02686 1.01758 1.21695 0.97908 0.90586 1.07045 1.21795 0.81577 0.93444 0.74357 1.90713 1.56303 1.48226 1.50113 1.43435 1.07808 1.06855 1.72436 1.17591 0.97270 0.86213 1.01819 1.20820 0.99315 0.92961 0.97386 1.20571 0.97679 0.97143 1.06105 1.18053 0.92734 0.85318 0.94395 1.44822 1.27524 1.08514 1.56298 1.21326 0.86320 0.94576 0.96239 1.21077 0.98445 0.94047 0.96515 0.92552 1.21645 1.00881 1.00956 0.94975 1.19518 0.94673 0.94273 0.95794 1.21434 1.12482 0.93854 1.28048 0.94705 1.26027 0.99639 0.95784 0.98227 1.70073 1.32829 1.10925 1.45658 0.85686 0.79203 0.79275 0.78661 1.19220 1.16668 1.21467 1.20697 1.02809 0.93338 1.04664 1.20855 0.95849 0.96058 0.98090 0.93772 0.89479 0.93661 0.85993 0.85987 0.73579 0.86345 0.85561 0.76327 0.92570 0.91757 0.92952 0.94484 0.92040 0.96109 0.95882 0.92709 0.85052 0.83105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.20 71.98 0.66 -0.88 16 2 C -0.13 -1.04 6.42 29.85 0.19 -0.85 16 3 C 0.50 8.78 7.57 87.66 0.66 9.44 16 4 O -0.57 -15.97 13.67 -3.09 -0.04 -16.01 16 5 N -0.66 -9.83 5.35 -303.35 -1.62 -11.45 16 6 C 0.07 1.44 6.28 38.11 0.24 1.68 16 7 C -0.08 -2.17 8.65 22.37 0.19 -1.98 16 8 C -0.19 -4.96 9.89 22.38 0.22 -4.74 16 9 C 0.20 5.24 6.66 38.17 0.25 5.49 16 10 N -0.74 -19.82 5.47 -339.25 -1.86 -21.67 16 11 C 0.14 4.09 4.30 86.38 0.37 4.46 16 12 C -0.08 -2.98 2.37 -10.79 -0.03 -3.00 16 13 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.13 -4.42 8.88 71.98 0.64 -3.78 16 15 C 0.00 -0.21 3.51 29.85 0.10 -0.10 16 16 C -0.52 -29.24 8.96 25.60 0.23 -29.01 16 17 H 0.03 2.16 7.30 -2.91 -0.02 2.14 16 18 C 0.00 -0.04 5.47 84.66 0.46 0.43 16 19 N -0.95 -59.79 13.96 21.45 0.30 -59.49 16 20 Si 0.95 43.66 27.47 68.60 1.88 45.55 16 21 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 22 H -0.24 -10.25 6.54 99.48 0.65 -9.60 16 23 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 24 C -0.19 -4.56 9.31 22.38 0.21 -4.35 16 25 C -0.09 -1.75 9.95 22.37 0.22 -1.53 16 26 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 27 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.04 0.65 8.10 -2.39 -0.02 0.63 16 29 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 30 H 0.12 0.34 8.14 -2.39 -0.02 0.33 16 31 H 0.43 2.80 8.82 -92.71 -0.82 1.98 16 32 H 0.12 3.26 6.41 -2.91 -0.02 3.24 16 33 H 0.13 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.40 10.16 7.67 -92.71 -0.71 9.45 16 35 H 0.06 1.65 7.94 -2.38 -0.02 1.63 16 36 H 0.06 1.79 7.96 -2.39 -0.02 1.77 16 37 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.04 1.50 6.95 -2.39 -0.02 1.48 16 39 H 0.06 1.77 7.18 -2.39 -0.02 1.75 16 40 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 41 H 0.02 0.99 7.57 -2.38 -0.02 0.97 16 42 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 43 H 0.13 2.93 6.73 -2.91 -0.02 2.91 16 44 H 0.15 2.01 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -73.59 357.14 2.72 -70.87 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.58 Total: 20.93 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 4.64 Total: -28.72 kcal Atomic # 7 Polarization: -89.44 SS G_CDS: -3.18 Total: -92.62 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.04 Total: -16.01 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.88 Total: 45.55 kcal Total: -73.59 2.72 -70.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602490332.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.838 kcal (2) G-P(sol) polarization free energy of solvation -73.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.96 seconds