Wall clock time and date at job start Tue Mar 31 2020 08:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47115 * 179.97438 * 16 15 14 18 18 C 1.38378 * 119.93110 * 269.73467 * 17 16 15 19 19 C 1.38338 * 120.29399 * 179.72522 * 18 17 16 20 20 C 1.37982 * 120.14442 * 0.54862 * 19 18 17 21 21 C 1.39560 * 119.85070 * 359.72424 * 20 19 18 22 22 C 1.47843 * 120.14387 * 180.02562 * 21 20 19 23 23 N 1.34777 * 120.00045 * 359.96735 * 22 21 20 24 24 O 1.21555 * 120.00216 * 179.97438 * 22 21 20 25 25 C 1.37942 * 119.92490 * 90.00319 * 17 16 15 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 31 31 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 33 33 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 34 34 H 1.00892 * 111.00581 * 56.04080 * 14 13 2 35 35 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 36 36 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 37 37 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 38 38 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 39 39 H 1.07998 * 119.85306 * 359.96855 * 18 17 16 40 40 H 1.08001 * 119.93027 * 180.24353 * 19 18 17 41 41 H 1.07998 * 120.07933 * 179.74931 * 20 19 18 42 42 H 0.97000 * 119.99992 * 0.02562 * 23 22 21 43 43 H 0.97001 * 119.99899 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.07435 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.7431 1.7750 4.8433 11 1 0.6456 -0.2854 6.1189 12 1 2.7178 0.9682 5.9959 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 6 2.1898 -0.4899 -6.1422 18 6 3.4349 -0.1767 -6.6587 19 6 3.8919 -0.8012 -7.8053 20 6 3.1032 -1.7333 -8.4481 21 6 1.8442 -2.0496 -7.9357 22 6 0.9940 -3.0477 -8.6188 23 7 1.4340 -3.6538 -9.7393 24 8 -0.1020 -3.3216 -8.1700 25 6 1.3914 -1.4199 -6.7750 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 2.9235 -1.8416 4.7319 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 1.9882 0.9872 -2.3967 35 1 3.2128 -0.7038 -3.6399 36 1 1.6922 -1.6246 -3.7300 37 1 0.6157 0.2678 -4.9162 38 1 2.1361 1.1891 -4.8264 39 1 4.0541 0.5557 -6.1622 40 1 4.8662 -0.5552 -8.2011 41 1 3.4594 -2.2172 -9.3454 42 1 2.3086 -3.4355 -10.0973 43 1 0.8759 -4.3084 -10.1877 44 1 0.4183 -1.6606 -6.3731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602506833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:52 Heat of formation + Delta-G solvation = -42.157785 kcal Electronic energy + Delta-G solvation = -21617.991172 eV Core-core repulsion = 18340.725774 eV Total energy + Delta-G solvation = -3277.265397 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.47804 -38.76473 -37.00767 -34.87206 -34.11521 -32.73408 -31.56633 -31.37116 -28.37894 -26.69598 -25.04254 -24.49202 -23.15227 -22.08831 -21.68520 -20.46088 -19.02245 -18.37406 -17.11749 -16.38987 -16.30229 -15.78629 -15.37146 -15.08966 -14.94083 -14.61614 -14.19408 -14.12901 -14.05295 -13.54093 -13.09685 -12.97055 -12.48767 -12.22898 -12.07120 -11.76330 -11.44605 -11.39206 -11.36933 -11.04640 -10.82977 -10.68820 -10.41420 -10.26268 -10.19843 -10.12588 -9.67006 -9.31298 -9.18698 -9.05772 -8.89103 -8.31025 -8.11284 -5.95536 -3.96470 0.49410 0.99472 2.52156 3.09035 3.33636 3.41130 3.45376 3.49990 4.22681 4.37609 4.46548 4.50263 4.59773 4.85796 4.92876 5.03467 5.14043 5.25202 5.38887 5.40376 5.53164 5.68150 5.73594 5.81373 5.91193 5.95942 6.00937 6.02967 6.19149 6.29509 6.35231 6.45531 6.54092 6.58607 6.72414 6.90298 7.04590 7.21758 7.23124 7.37977 7.66554 7.72846 7.85776 7.88362 8.05054 8.49133 9.10224 9.66846 11.16061 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031269 B = 0.002165 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.252124 B =12929.327354 C =13217.118313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.053 0.947 4 C 0.026 3.974 5 C -0.511 4.511 6 H 0.057 0.943 7 C 0.053 3.947 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.064 3.936 14 N -0.688 5.688 15 C 0.064 3.936 16 C -0.081 4.081 17 C -0.082 4.082 18 C -0.088 4.088 19 C -0.126 4.126 20 C -0.094 4.094 21 C -0.140 4.140 22 C 0.563 3.437 23 N -0.853 5.853 24 O -0.537 6.537 25 C -0.053 4.053 26 H 0.053 0.947 27 H 0.042 0.958 28 H 0.039 0.961 29 H 0.016 0.984 30 H 0.012 0.988 31 H 0.259 0.741 32 H 0.024 0.976 33 H 0.066 0.934 34 H 0.336 0.664 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.128 0.872 40 H 0.129 0.871 41 H 0.124 0.876 42 H 0.400 0.600 43 H 0.405 0.595 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 0.431 -29.383 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.549 4.549 6 H 0.075 0.925 7 C -0.147 4.147 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.064 4.064 14 N -0.319 5.319 15 C -0.066 4.066 16 C -0.118 4.118 17 C -0.082 4.082 18 C -0.107 4.107 19 C -0.144 4.144 20 C -0.112 4.112 21 C -0.143 4.143 22 C 0.349 3.651 23 N -0.417 5.417 24 O -0.414 6.414 25 C -0.072 4.072 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.035 0.965 30 H 0.030 0.970 31 H 0.068 0.932 32 H 0.042 0.958 33 H 0.085 0.915 34 H 0.154 0.846 35 H 0.045 0.955 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.146 0.854 40 H 0.147 0.853 41 H 0.142 0.858 42 H 0.230 0.770 43 H 0.236 0.764 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.977 -0.031 -28.852 28.920 hybrid contribution 1.147 0.359 0.523 1.311 sum 3.124 0.328 -28.329 28.502 Atomic orbital electron populations 1.21592 0.95696 1.00608 1.00151 1.21200 0.96039 0.98868 0.94017 0.92849 1.19134 0.95893 0.95625 0.90486 1.21280 1.34387 1.08276 0.90972 0.92493 1.25034 0.95393 0.95131 0.99137 1.69984 1.39228 1.21268 1.23226 0.86566 0.78212 0.80136 0.83278 1.19742 1.21086 1.21156 1.22152 0.97136 0.97768 0.89385 1.60529 1.64062 1.05743 1.01535 1.21904 0.97211 0.98314 0.89146 1.20631 1.02513 0.98362 0.90336 1.19932 0.94333 0.96999 0.96971 1.21344 0.95210 0.98727 0.95392 1.21083 1.00037 0.97133 0.96141 1.21228 0.93194 0.97493 0.99329 1.19852 0.95676 1.00404 0.98386 1.18336 0.85872 0.80624 0.80240 1.43754 1.22969 1.46121 1.28842 1.90843 1.21334 1.63997 1.65223 1.21245 0.99976 0.93233 0.92726 0.92784 0.93905 0.94158 0.96540 0.96954 0.93183 0.95799 0.91537 0.84626 0.95503 0.91031 0.89656 0.90791 0.85429 0.85344 0.85834 0.77027 0.76427 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.89 37.16 0.33 -2.11 16 2 C -0.08 -1.70 2.48 -90.62 -0.22 -1.93 16 3 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.68 4.45 -27.89 -0.12 0.55 16 5 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 6 H 0.06 1.57 7.06 -52.48 -0.37 1.20 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.06 1.12 5.07 -3.82 -0.02 1.10 16 14 N -0.69 -9.87 5.96 -113.78 -0.68 -10.55 16 15 C 0.06 0.77 5.67 -3.82 -0.02 0.75 16 16 C -0.08 -0.79 5.60 -27.88 -0.16 -0.95 16 17 C -0.08 -0.78 5.13 -104.68 -0.54 -1.31 16 18 C -0.09 -0.70 9.69 -39.49 -0.38 -1.09 16 19 C -0.13 -0.84 10.03 -39.64 -0.40 -1.24 16 20 C -0.09 -0.62 9.54 -39.18 -0.37 -1.00 16 21 C -0.14 -1.30 5.87 -104.97 -0.62 -1.92 16 22 C 0.56 5.64 8.05 -12.33 -0.10 5.54 16 23 N -0.85 -4.58 8.82 30.53 0.27 -4.31 16 24 O -0.54 -7.71 17.18 5.32 0.09 -7.61 16 25 C -0.05 -0.56 9.24 -39.18 -0.36 -0.92 16 26 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 27 H 0.04 0.76 7.75 -51.93 -0.40 0.35 16 28 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.01 0.34 8.14 -51.92 -0.42 -0.09 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.34 4.45 8.73 -39.30 -0.34 4.11 16 35 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 38 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 39 H 0.13 0.83 8.06 -52.49 -0.42 0.40 16 40 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.12 0.40 6.40 -52.49 -0.34 0.07 16 42 H 0.40 0.94 6.86 -40.82 -0.28 0.65 16 43 H 0.40 1.71 8.93 -40.82 -0.36 1.35 16 44 H 0.14 1.57 7.65 -52.48 -0.40 1.17 16 LS Contribution 365.75 15.07 5.51 5.51 Total: -1.00 -34.00 365.75 -9.52 -43.52 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -7.06 Total: 0.90 kcal Atomic # 6 Polarization: -14.43 SS G_CDS: -3.37 Total: -17.80 kcal Atomic # 7 Polarization: -41.73 SS G_CDS: 0.33 Total: -41.40 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.09 Total: -7.61 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.00 -9.52 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.363 kcal (2) G-P(sol) polarization free energy of solvation -33.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds