Wall clock time and date at job start Tue Mar 31 2020 08:03:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.50698 * 109.47721 * 295.00119 * 4 2 1 6 6 H 1.08008 * 119.99163 * 0.02562 * 5 4 2 7 7 C 1.37869 * 120.00614 * 180.02562 * 5 4 2 8 8 N 1.31515 * 119.99741 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00175 * 179.97438 * 7 5 4 10 10 H 1.48495 * 109.46910 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47081 * 119.99681 * 9 7 5 12 12 H 1.48493 * 109.47178 * 239.99915 * 9 7 5 13 13 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 14 14 N 1.46901 * 109.46818 * 65.00620 * 13 2 1 15 15 C 1.46902 * 111.00023 * 179.97438 * 14 13 2 16 16 C 1.53001 * 109.47288 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47115 * 179.97438 * 16 15 14 18 18 C 1.38378 * 119.93110 * 269.73467 * 17 16 15 19 19 C 1.38338 * 120.29399 * 179.72522 * 18 17 16 20 20 C 1.37982 * 120.14442 * 0.54862 * 19 18 17 21 21 C 1.39560 * 119.85070 * 359.72424 * 20 19 18 22 22 C 1.47843 * 120.14387 * 180.02562 * 21 20 19 23 23 N 1.34777 * 120.00045 * 359.96735 * 22 21 20 24 24 O 1.21555 * 120.00216 * 179.97438 * 22 21 20 25 25 C 1.37942 * 119.92490 * 90.00319 * 17 16 15 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47325 * 55.00085 * 4 2 1 30 30 H 1.09008 * 109.47017 * 174.99994 * 4 2 1 31 31 H 0.97006 * 119.99397 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.47069 * 184.99942 * 13 2 1 33 33 H 1.08991 * 109.47625 * 305.00262 * 13 2 1 34 34 H 1.00892 * 111.00581 * 56.04080 * 14 13 2 35 35 H 1.09000 * 109.47041 * 300.00315 * 15 14 13 36 36 H 1.09004 * 109.46766 * 59.99797 * 15 14 13 37 37 H 1.08993 * 109.47074 * 300.00164 * 16 15 14 38 38 H 1.09004 * 109.46404 * 60.00223 * 16 15 14 39 39 H 1.07998 * 119.85306 * 359.96855 * 18 17 16 40 40 H 1.08001 * 119.93027 * 180.24353 * 19 18 17 41 41 H 1.07998 * 120.07933 * 179.74931 * 20 19 18 42 42 H 0.97000 * 119.99992 * 0.02562 * 23 22 21 43 43 H 0.97001 * 119.99899 * 180.02562 * 23 22 21 44 44 H 1.08004 * 120.07435 * 359.97438 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6413 0.0570 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9931 -0.4017 3.7283 8 7 2.6763 -1.5187 3.8512 9 14 1.4995 0.5634 5.2496 10 1 0.7431 1.7750 4.8433 11 1 0.6456 -0.2854 6.1189 12 1 2.7178 0.9682 5.9959 13 6 2.0401 -0.7213 -1.2492 14 7 1.6515 0.0374 -2.4456 15 6 2.1259 -0.6265 -3.6671 16 6 1.7026 0.1909 -4.8892 17 6 2.1898 -0.4899 -6.1422 18 6 3.4349 -0.1767 -6.6587 19 6 3.8919 -0.8012 -7.8053 20 6 3.1032 -1.7333 -8.4481 21 6 1.8442 -2.0496 -7.9357 22 6 0.9940 -3.0477 -8.6188 23 7 1.4340 -3.6538 -9.7393 24 8 -0.1020 -3.3216 -8.1700 25 6 1.3914 -1.4199 -6.7750 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6053 -1.7198 1.2952 30 1 3.1263 -0.7995 1.2056 31 1 2.9235 -1.8416 4.7319 32 1 3.1264 -0.7995 -1.2055 33 1 1.6055 -1.7198 -1.2951 34 1 1.9882 0.9872 -2.3967 35 1 3.2128 -0.7038 -3.6399 36 1 1.6922 -1.6246 -3.7300 37 1 0.6157 0.2678 -4.9162 38 1 2.1361 1.1891 -4.8264 39 1 4.0541 0.5557 -6.1622 40 1 4.8662 -0.5552 -8.2011 41 1 3.4594 -2.2172 -9.3454 42 1 2.3086 -3.4355 -10.0973 43 1 0.8759 -4.3084 -10.1877 44 1 0.4183 -1.6606 -6.3731 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602506833.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:43 Heat of formation + Delta-G solvation = -65.952485 kcal Electronic energy + Delta-G solvation = -21619.022987 eV Core-core repulsion = 18340.725774 eV Total energy + Delta-G solvation = -3278.297213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 4.34 seconds Orbital eigenvalues (eV) -41.16554 -39.51488 -38.38557 -36.19120 -35.01062 -34.31001 -32.91110 -31.98489 -29.54960 -28.51139 -26.52314 -25.17888 -24.60712 -23.40078 -22.45521 -21.22847 -20.65048 -18.99645 -18.47913 -17.78747 -16.97659 -16.85424 -16.60861 -16.10906 -15.88535 -15.80588 -15.64757 -15.34829 -14.82626 -14.62323 -14.28157 -14.23778 -13.72824 -13.61944 -13.30602 -13.15830 -12.80728 -12.72060 -12.57024 -12.54762 -12.22968 -12.16948 -11.89089 -11.85584 -11.47635 -11.21009 -11.08582 -10.90565 -10.77550 -10.54080 -9.93648 -9.73134 -9.32942 -8.17455 -6.26565 -0.15157 0.37577 1.40121 1.40707 1.53916 1.82003 2.42238 2.50521 2.83852 3.15920 3.24324 3.82453 3.87861 3.93411 4.08092 4.16691 4.22687 4.32196 4.37196 4.39101 4.52544 4.55308 4.65647 4.78292 4.89469 4.91246 5.01280 5.03047 5.06476 5.19133 5.28789 5.30267 5.42842 5.46963 5.50920 5.56412 5.62084 5.81328 5.82364 5.89037 5.94559 6.05362 6.31326 6.39095 6.54311 6.89756 7.25660 7.41717 8.94910 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031269 B = 0.002165 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.252124 B =12929.327354 C =13217.118313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.074 4.074 3 H 0.058 0.942 4 C 0.031 3.969 5 C -0.527 4.527 6 H 0.062 0.938 7 C -0.006 4.006 8 N -0.936 5.936 9 Si 0.963 3.037 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.279 1.279 13 C 0.077 3.923 14 N -0.686 5.686 15 C 0.068 3.932 16 C -0.070 4.070 17 C -0.094 4.094 18 C -0.090 4.090 19 C -0.123 4.123 20 C -0.082 4.082 21 C -0.157 4.157 22 C 0.557 3.443 23 N -0.827 5.827 24 O -0.594 6.594 25 C -0.077 4.077 26 H 0.039 0.961 27 H 0.067 0.933 28 H 0.031 0.969 29 H -0.013 1.013 30 H -0.013 1.013 31 H 0.262 0.738 32 H 0.020 0.980 33 H 0.055 0.945 34 H 0.347 0.653 35 H 0.033 0.967 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.091 0.909 39 H 0.146 0.854 40 H 0.162 0.838 41 H 0.162 0.838 42 H 0.418 0.582 43 H 0.412 0.588 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.516 1.955 -31.180 31.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.092 4.092 3 H 0.076 0.924 4 C -0.007 4.007 5 C -0.565 4.565 6 H 0.080 0.920 7 C -0.203 4.203 8 N -0.577 5.577 9 Si 0.788 3.212 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.205 1.205 13 C -0.052 4.052 14 N -0.318 5.318 15 C -0.061 4.061 16 C -0.108 4.108 17 C -0.095 4.095 18 C -0.109 4.109 19 C -0.141 4.141 20 C -0.100 4.100 21 C -0.160 4.160 22 C 0.344 3.656 23 N -0.392 5.392 24 O -0.476 6.476 25 C -0.096 4.096 26 H 0.058 0.942 27 H 0.086 0.914 28 H 0.050 0.950 29 H 0.006 0.994 30 H 0.005 0.995 31 H 0.070 0.930 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.165 0.835 35 H 0.051 0.949 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.109 0.891 39 H 0.163 0.837 40 H 0.180 0.820 41 H 0.180 0.820 42 H 0.251 0.749 43 H 0.245 0.755 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.314 1.500 -30.710 30.925 hybrid contribution 0.815 -0.155 0.979 1.283 sum 4.129 1.345 -29.731 30.047 Atomic orbital electron populations 1.21498 0.94831 1.00229 1.00602 1.21015 0.96612 0.98580 0.93036 0.92352 1.19033 0.94145 0.94639 0.92869 1.21673 1.34213 1.08574 0.92010 0.91957 1.25990 0.95329 0.96164 1.02775 1.70119 1.40428 1.22997 1.24199 0.85423 0.78055 0.78868 0.78863 1.18475 1.20654 1.20474 1.21834 0.96595 0.97199 0.89570 1.60424 1.64265 1.06083 1.01004 1.21889 0.97367 0.97880 0.88989 1.20499 1.02025 0.98774 0.89499 1.19880 0.95242 0.97341 0.97029 1.21635 0.94454 0.98904 0.95868 1.21508 1.01153 0.96120 0.95284 1.21632 0.91564 0.96795 1.00033 1.19927 0.96958 1.00721 0.98405 1.18590 0.85263 0.80767 0.80954 1.43554 1.23647 1.44897 1.27107 1.90812 1.23723 1.65987 1.67033 1.21197 0.99614 0.94706 0.94080 0.94236 0.91371 0.94969 0.99440 0.99460 0.92970 0.96191 0.92626 0.83470 0.94894 0.92576 0.90654 0.89058 0.83669 0.82049 0.82046 0.74920 0.75546 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.51 8.89 71.98 0.64 -3.87 16 2 C -0.07 -3.06 2.48 -10.79 -0.03 -3.08 16 3 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 4 C 0.03 1.65 4.45 29.85 0.13 1.78 16 5 C -0.53 -30.19 8.41 25.60 0.22 -29.98 16 6 H 0.06 3.43 7.06 -2.91 -0.02 3.41 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -58.09 13.29 21.44 0.28 -57.80 16 9 Si 0.96 45.06 29.54 68.60 2.03 47.08 16 10 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.08 2.73 5.07 86.30 0.44 3.16 16 14 N -0.69 -19.14 5.96 -513.88 -3.06 -22.20 16 15 C 0.07 1.61 5.67 86.30 0.49 2.10 16 16 C -0.07 -1.33 5.60 29.85 0.17 -1.16 16 17 C -0.09 -1.72 5.13 -19.90 -0.10 -1.83 16 18 C -0.09 -1.21 9.69 22.33 0.22 -0.99 16 19 C -0.12 -1.18 10.03 22.23 0.22 -0.96 16 20 C -0.08 -0.83 9.54 22.53 0.21 -0.62 16 21 C -0.16 -2.82 5.87 -20.09 -0.12 -2.94 16 22 C 0.56 11.13 8.05 86.79 0.70 11.83 16 23 N -0.83 -7.52 8.82 -175.60 -1.55 -9.07 16 24 O -0.59 -18.04 17.18 -3.89 -0.07 -18.10 16 25 C -0.08 -1.67 9.24 22.53 0.21 -1.46 16 26 H 0.04 1.64 6.95 -2.39 -0.02 1.63 16 27 H 0.07 2.33 7.75 -2.39 -0.02 2.31 16 28 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 29 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 30 H -0.01 -0.75 8.14 -2.38 -0.02 -0.77 16 31 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 32 H 0.02 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.35 8.59 8.73 -89.70 -0.78 7.80 16 35 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 38 H 0.09 1.39 8.08 -2.38 -0.02 1.37 16 39 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 40 H 0.16 0.53 8.06 -2.91 -0.02 0.50 16 41 H 0.16 0.30 6.40 -2.91 -0.02 0.28 16 42 H 0.42 0.66 6.86 -92.71 -0.64 0.02 16 43 H 0.41 2.91 8.93 -92.71 -0.83 2.08 16 44 H 0.11 2.91 7.65 -2.91 -0.02 2.89 16 Total: -1.00 -76.56 365.75 0.26 -76.31 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -1.23 Total: 11.66 kcal Atomic # 6 Polarization: -31.73 SS G_CDS: 3.86 Total: -27.87 kcal Atomic # 7 Polarization: -84.74 SS G_CDS: -4.33 Total: -89.07 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.07 Total: -18.10 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -76.56 0.26 -76.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602506833.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.354 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.34 seconds