Wall clock time and date at job start Tue Mar 31 2020 08:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99956 * 2 1 4 4 N 1.34781 * 120.00029 * 179.97438 * 2 1 3 5 5 C 1.39919 * 119.99872 * 185.27609 * 4 2 1 6 6 C 1.38866 * 120.07217 * 33.29748 * 5 4 2 7 7 C 1.38117 * 119.93268 * 180.02562 * 6 5 4 8 8 C 1.38277 * 120.06602 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.92879 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.47042 * 89.99858 * 9 8 7 11 11 C 1.46899 * 111.00009 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47468 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.46940 * 305.00545 * 12 11 10 14 14 C 1.53000 * 109.46941 * 64.99724 * 12 11 10 15 15 C 1.52994 * 109.47537 * 184.99995 * 12 11 10 16 16 C 1.50695 * 109.47323 * 174.99654 * 15 12 11 17 17 H 1.08004 * 119.99816 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00209 * 179.97438 * 16 15 12 19 19 N 1.31518 * 120.00069 * 179.72371 * 18 16 15 20 20 Si 1.86799 * 119.99931 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47057 * 269.72240 * 20 18 16 22 22 H 1.48499 * 109.47332 * 29.72235 * 20 18 16 23 23 H 1.48506 * 109.47284 * 149.72017 * 20 18 16 24 24 C 1.38283 * 120.14524 * 0.25752 * 8 7 6 25 25 C 1.38117 * 120.06776 * 359.48748 * 24 8 7 26 26 H 1.09000 * 109.47651 * 269.99878 * 1 2 3 27 27 H 1.09000 * 109.47239 * 30.00646 * 1 2 3 28 28 H 1.09006 * 109.46905 * 149.99824 * 1 2 3 29 29 H 0.96997 * 119.99831 * 5.28397 * 4 2 1 30 30 H 1.08002 * 120.03804 * 359.97438 * 6 5 4 31 31 H 1.07997 * 119.97015 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.46992 * 330.00001 * 9 8 7 33 33 H 1.08999 * 109.47042 * 209.99792 * 9 8 7 34 34 H 1.00902 * 110.99911 * 56.04794 * 10 9 8 35 35 H 1.09000 * 109.47487 * 59.99955 * 11 10 9 36 36 H 1.09003 * 109.47406 * 300.00086 * 11 10 9 37 37 H 1.08997 * 109.46890 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47491 * 300.00523 * 14 12 11 39 39 H 1.08998 * 109.46998 * 60.00591 * 14 12 11 40 40 H 1.09002 * 109.46550 * 54.99913 * 15 12 11 41 41 H 1.09001 * 109.47020 * 294.99873 * 15 12 11 42 42 H 0.97004 * 119.99726 * 180.27145 * 19 18 16 43 43 H 1.07998 * 119.96582 * 179.74919 * 24 8 7 44 44 H 1.07997 * 120.03190 * 180.25824 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5756 -1.1697 0.1119 6 6 4.2148 -0.1976 0.8701 7 6 5.5918 -0.2024 0.9776 8 6 6.3337 -1.1743 0.3318 9 6 7.8360 -1.1764 0.4509 10 7 8.2344 -1.9888 1.6082 11 6 9.6957 -2.0132 1.7562 12 6 10.0714 -2.8675 2.9686 13 1 9.5513 -2.4946 3.8510 14 6 9.6659 -4.3207 2.7139 15 6 11.5823 -2.7922 3.1973 16 6 11.9366 -3.5323 4.4613 17 1 11.1616 -4.0091 5.0431 18 6 13.2502 -3.6016 4.8744 19 7 13.5587 -4.2429 5.9804 20 14 14.5906 -2.7775 3.8677 21 1 15.1203 -3.7389 2.8675 22 1 14.0278 -1.5949 3.1677 23 1 15.6894 -2.3434 4.7674 24 6 5.7006 -2.1409 -0.4278 25 6 4.3236 -2.1447 -0.5350 26 1 -0.3634 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6990 -2.0055 -0.0765 30 1 3.6360 0.5620 1.3744 31 1 6.0896 0.5536 1.5667 32 1 8.1913 -0.1546 0.5847 33 1 8.2717 -1.5968 -0.4555 34 1 7.8620 -2.9240 1.5389 35 1 10.0636 -0.9972 1.8992 36 1 10.1448 -2.4392 0.8589 37 1 9.9332 -4.9291 3.5778 38 1 8.5895 -4.3744 2.5510 39 1 10.1860 -4.6936 1.8316 40 1 11.8840 -1.7489 3.2904 41 1 12.1006 -3.2464 2.3528 42 1 14.4824 -4.2883 6.2731 43 1 6.2832 -2.8962 -0.9342 44 1 3.8295 -2.9024 -1.1250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602507038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:02 Heat of formation + Delta-G solvation = -26.422453 kcal Electronic energy + Delta-G solvation = -21813.282982 eV Core-core repulsion = 18536.699919 eV Total energy + Delta-G solvation = -3276.583062 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.79373 -38.95030 -37.01696 -35.34794 -33.84093 -32.12459 -31.10897 -31.02076 -29.29066 -27.43901 -25.91716 -24.24299 -23.17318 -21.94026 -21.58498 -20.63263 -19.00832 -18.11720 -17.30804 -16.87727 -16.05347 -16.01305 -15.12165 -14.83318 -14.80445 -14.59710 -13.98530 -13.94272 -13.63412 -13.49810 -13.24353 -13.02233 -12.95811 -12.62590 -12.48496 -12.08736 -11.90402 -11.68950 -11.44227 -11.27172 -11.00977 -10.70834 -10.60846 -10.39940 -10.20924 -9.78756 -9.70594 -9.42855 -9.04829 -9.03093 -8.49357 -8.34818 -8.10463 -5.99623 -3.96388 1.04806 1.28936 2.20836 2.69280 3.33066 3.40723 3.44673 3.61813 4.26683 4.49048 4.53324 4.64513 4.72673 4.80961 4.86769 4.88430 5.18064 5.23072 5.29381 5.33921 5.40331 5.55353 5.60329 5.71155 5.75565 5.91566 5.97842 6.07285 6.11470 6.17068 6.31086 6.39387 6.48190 6.57344 6.78341 6.86032 6.98929 6.99340 7.08448 7.25235 7.35126 7.50719 7.62660 7.70098 7.85387 8.60031 9.06208 9.63322 11.13779 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.002239 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.246361 B =12503.506950 C =12561.176098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.508 3.492 3 O -0.525 6.525 4 N -0.674 5.674 5 C 0.137 3.863 6 C -0.121 4.121 7 C -0.077 4.077 8 C -0.089 4.089 9 C 0.096 3.904 10 N -0.684 5.684 11 C 0.061 3.939 12 C -0.076 4.076 13 H 0.072 0.928 14 C -0.136 4.136 15 C -0.009 4.009 16 C -0.512 4.512 17 H 0.074 0.926 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.266 1.266 23 H -0.289 1.289 24 C -0.096 4.096 25 C -0.146 4.146 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.410 0.590 30 H 0.132 0.868 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.340 0.660 35 H 0.067 0.933 36 H 0.024 0.976 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.040 0.960 40 H 0.015 0.985 41 H 0.009 0.991 42 H 0.262 0.738 43 H 0.123 0.877 44 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.726 5.013 -15.799 30.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.296 3.704 3 O -0.401 6.401 4 N -0.320 5.320 5 C 0.043 3.957 6 C -0.141 4.141 7 C -0.096 4.096 8 C -0.090 4.090 9 C -0.032 4.032 10 N -0.316 5.316 11 C -0.067 4.067 12 C -0.094 4.094 13 H 0.090 0.910 14 C -0.193 4.193 15 C -0.047 4.047 16 C -0.550 4.550 17 H 0.092 0.908 18 C -0.137 4.137 19 N -0.545 5.545 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.191 1.191 23 H -0.215 1.215 24 C -0.115 4.115 25 C -0.166 4.166 26 H 0.116 0.884 27 H 0.115 0.885 28 H 0.100 0.900 29 H 0.246 0.754 30 H 0.150 0.850 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.159 0.841 35 H 0.086 0.914 36 H 0.042 0.958 37 H 0.087 0.913 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.141 0.859 44 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.288 6.267 -15.226 30.176 hybrid contribution 0.814 -0.740 -1.231 1.651 sum -24.474 5.527 -16.457 30.006 Atomic orbital electron populations 1.21893 0.90746 1.05220 1.05210 1.21020 0.90896 0.83209 0.75262 1.90765 1.70534 1.31221 1.47542 1.43645 1.05483 1.09827 1.73046 1.17722 0.82418 0.97806 0.97735 1.21105 0.94852 0.99358 0.98769 1.20958 0.92882 0.98115 0.97685 1.19858 0.95688 0.95624 0.97835 1.20876 0.90355 0.99579 0.92438 1.60594 1.12002 1.18206 1.40771 1.22192 0.85799 1.00655 0.98094 1.21031 0.98516 0.93903 0.95994 0.90987 1.21752 0.98072 0.97551 1.01947 1.19605 0.91109 0.96792 0.97149 1.21137 0.93882 1.33101 1.06883 0.90821 1.25039 0.98702 0.95034 0.94915 1.69921 1.18666 1.43119 1.22762 0.86798 0.81764 0.80535 0.80272 1.20472 1.19060 1.21492 1.20848 0.93658 0.98212 0.98777 1.20785 0.94050 1.00344 1.01423 0.88363 0.88511 0.89963 0.75396 0.85033 0.85409 0.90284 0.94697 0.84083 0.91406 0.95805 0.91340 0.94707 0.94100 0.96654 0.97256 0.92861 0.85855 0.85908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.61 10.31 36.00 0.37 -0.24 16 2 C 0.51 4.19 7.68 -10.99 -0.08 4.11 16 3 O -0.53 -6.79 14.78 5.55 0.08 -6.71 16 4 N -0.67 -4.87 5.34 -9.87 -0.05 -4.92 16 5 C 0.14 1.40 6.28 -83.70 -0.53 0.87 16 6 C -0.12 -1.45 8.66 -39.39 -0.34 -1.79 16 7 C -0.08 -0.93 9.69 -39.61 -0.38 -1.32 16 8 C -0.09 -1.04 5.39 -104.59 -0.56 -1.60 16 9 C 0.10 1.17 5.81 -4.97 -0.03 1.15 16 10 N -0.68 -9.80 6.49 -115.06 -0.75 -10.55 16 11 C 0.06 1.00 5.14 -3.82 -0.02 0.98 16 12 C -0.08 -1.50 2.54 -90.62 -0.23 -1.73 16 13 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 14 C -0.14 -2.50 8.77 37.16 0.33 -2.17 16 15 C -0.01 -0.21 3.51 -27.89 -0.10 -0.31 16 16 C -0.51 -14.55 8.96 -34.44 -0.31 -14.86 16 17 H 0.07 2.24 7.30 -52.48 -0.38 1.86 16 18 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 19 N -0.91 -28.12 13.96 55.43 0.77 -27.35 16 20 Si 0.88 21.98 27.47 -169.99 -4.67 17.31 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 C -0.10 -0.98 9.69 -39.61 -0.38 -1.36 16 25 C -0.15 -1.35 9.96 -39.39 -0.39 -1.74 16 26 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 27 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.09 8.14 -51.93 -0.42 -0.34 16 29 H 0.41 1.46 8.82 -40.82 -0.36 1.10 16 30 H 0.13 1.66 6.41 -52.49 -0.34 1.32 16 31 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 33 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.34 4.68 6.98 -39.29 -0.27 4.41 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 1.42 6.95 -51.93 -0.36 1.06 16 38 H 0.03 0.54 6.68 -51.93 -0.35 0.19 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 41 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -34.14 360.21 -9.01 -43.15 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -7.06 Total: 1.87 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -2.76 Total: -18.22 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: -0.03 Total: -42.82 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: 0.08 Total: -6.71 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.14 -9.01 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602507038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.724 kcal (2) G-P(sol) polarization free energy of solvation -34.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds