Wall clock time and date at job start Tue Mar 31 2020 08:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21283 * 119.99956 * 2 1 4 4 N 1.34781 * 120.00029 * 179.97438 * 2 1 3 5 5 C 1.39919 * 119.99872 * 185.27609 * 4 2 1 6 6 C 1.38866 * 120.07217 * 33.29748 * 5 4 2 7 7 C 1.38117 * 119.93268 * 180.02562 * 6 5 4 8 8 C 1.38277 * 120.06602 * 359.97438 * 7 6 5 9 9 C 1.50703 * 119.92879 * 179.97438 * 8 7 6 10 10 N 1.46904 * 109.47042 * 89.99858 * 9 8 7 11 11 C 1.46899 * 111.00009 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.47468 * 180.02562 * 11 10 9 13 13 H 1.09005 * 109.46940 * 305.00545 * 12 11 10 14 14 C 1.53000 * 109.46941 * 64.99724 * 12 11 10 15 15 C 1.52994 * 109.47537 * 184.99995 * 12 11 10 16 16 C 1.50695 * 109.47323 * 174.99654 * 15 12 11 17 17 H 1.08004 * 119.99816 * 0.02562 * 16 15 12 18 18 C 1.37874 * 120.00209 * 179.97438 * 16 15 12 19 19 N 1.31518 * 120.00069 * 179.72371 * 18 16 15 20 20 Si 1.86799 * 119.99931 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47057 * 269.72240 * 20 18 16 22 22 H 1.48499 * 109.47332 * 29.72235 * 20 18 16 23 23 H 1.48506 * 109.47284 * 149.72017 * 20 18 16 24 24 C 1.38283 * 120.14524 * 0.25752 * 8 7 6 25 25 C 1.38117 * 120.06776 * 359.48748 * 24 8 7 26 26 H 1.09000 * 109.47651 * 269.99878 * 1 2 3 27 27 H 1.09000 * 109.47239 * 30.00646 * 1 2 3 28 28 H 1.09006 * 109.46905 * 149.99824 * 1 2 3 29 29 H 0.96997 * 119.99831 * 5.28397 * 4 2 1 30 30 H 1.08002 * 120.03804 * 359.97438 * 6 5 4 31 31 H 1.07997 * 119.97015 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.46992 * 330.00001 * 9 8 7 33 33 H 1.08999 * 109.47042 * 209.99792 * 9 8 7 34 34 H 1.00902 * 110.99911 * 56.04794 * 10 9 8 35 35 H 1.09000 * 109.47487 * 59.99955 * 11 10 9 36 36 H 1.09003 * 109.47406 * 300.00086 * 11 10 9 37 37 H 1.08997 * 109.46890 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.47491 * 300.00523 * 14 12 11 39 39 H 1.08998 * 109.46998 * 60.00591 * 14 12 11 40 40 H 1.09002 * 109.46550 * 54.99913 * 15 12 11 41 41 H 1.09001 * 109.47020 * 294.99873 * 15 12 11 42 42 H 0.97004 * 119.99726 * 180.27145 * 19 18 16 43 43 H 1.07998 * 119.96582 * 179.74919 * 24 8 7 44 44 H 1.07997 * 120.03190 * 180.25824 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5756 -1.1697 0.1119 6 6 4.2148 -0.1976 0.8701 7 6 5.5918 -0.2024 0.9776 8 6 6.3337 -1.1743 0.3318 9 6 7.8360 -1.1764 0.4509 10 7 8.2344 -1.9888 1.6082 11 6 9.6957 -2.0132 1.7562 12 6 10.0714 -2.8675 2.9686 13 1 9.5513 -2.4946 3.8510 14 6 9.6659 -4.3207 2.7139 15 6 11.5823 -2.7922 3.1973 16 6 11.9366 -3.5323 4.4613 17 1 11.1616 -4.0091 5.0431 18 6 13.2502 -3.6016 4.8744 19 7 13.5587 -4.2429 5.9804 20 14 14.5906 -2.7775 3.8677 21 1 15.1203 -3.7389 2.8675 22 1 14.0278 -1.5949 3.1677 23 1 15.6894 -2.3434 4.7674 24 6 5.7006 -2.1409 -0.4278 25 6 4.3236 -2.1447 -0.5350 26 1 -0.3634 0.0000 1.0276 27 1 -0.3634 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5139 29 1 1.6990 -2.0055 -0.0765 30 1 3.6360 0.5620 1.3744 31 1 6.0896 0.5536 1.5667 32 1 8.1913 -0.1546 0.5847 33 1 8.2717 -1.5968 -0.4555 34 1 7.8620 -2.9240 1.5389 35 1 10.0636 -0.9972 1.8992 36 1 10.1448 -2.4392 0.8589 37 1 9.9332 -4.9291 3.5778 38 1 8.5895 -4.3744 2.5510 39 1 10.1860 -4.6936 1.8316 40 1 11.8840 -1.7489 3.2904 41 1 12.1006 -3.2464 2.3528 42 1 14.4824 -4.2883 6.2731 43 1 6.2832 -2.8962 -0.9342 44 1 3.8295 -2.9024 -1.1250 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602507038.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:01 Heat of formation + Delta-G solvation = -49.816129 kcal Electronic energy + Delta-G solvation = -21814.297407 eV Core-core repulsion = 18536.699919 eV Total energy + Delta-G solvation = -3277.597488 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.50188 -39.76611 -38.33675 -36.33354 -35.23033 -33.97020 -31.90074 -31.83600 -30.15446 -29.13870 -27.13605 -25.50626 -24.02775 -23.52843 -22.45584 -21.36093 -20.63747 -18.95965 -18.80551 -17.94697 -17.21463 -16.71519 -16.48844 -16.01501 -15.71861 -15.63406 -15.38476 -15.07576 -14.80382 -14.58058 -14.28239 -14.17358 -13.90771 -13.55487 -13.44629 -13.33167 -13.08526 -13.00904 -12.78343 -12.55033 -12.38961 -12.10681 -12.07414 -11.71039 -11.46157 -11.36269 -11.18841 -11.05354 -10.89254 -10.72777 -9.86234 -9.34496 -8.99700 -8.25180 -6.27400 0.24189 0.47561 1.36115 1.38618 1.50344 1.57461 2.13691 2.38525 2.78227 3.09905 3.46286 3.77963 3.91395 3.96874 4.07873 4.20080 4.23997 4.36577 4.42340 4.47749 4.49530 4.61559 4.64712 4.73544 4.76782 4.81341 4.86541 5.01856 5.06686 5.07166 5.13317 5.29454 5.30740 5.34959 5.39427 5.52963 5.56314 5.70791 5.72456 5.74539 6.05033 6.13946 6.35908 6.44923 6.52533 6.80227 7.13653 7.35923 8.91527 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.039976 B = 0.002239 C = 0.002229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.246361 B =12503.506950 C =12561.176098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.501 3.499 3 O -0.580 6.580 4 N -0.662 5.662 5 C 0.132 3.868 6 C -0.142 4.142 7 C -0.093 4.093 8 C -0.101 4.101 9 C 0.101 3.899 10 N -0.690 5.690 11 C 0.074 3.926 12 C -0.072 4.072 13 H 0.049 0.951 14 C -0.129 4.129 15 C -0.007 4.007 16 C -0.518 4.518 17 H 0.034 0.966 18 C -0.001 4.001 19 N -0.954 5.954 20 Si 0.949 3.051 21 H -0.267 1.267 22 H -0.247 1.247 23 H -0.287 1.287 24 C -0.096 4.096 25 C -0.140 4.140 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.115 0.885 29 H 0.430 0.570 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.345 0.655 35 H 0.065 0.935 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.015 0.985 41 H 0.019 0.981 42 H 0.264 0.736 43 H 0.144 0.856 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.933 4.605 -18.729 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.292 3.708 3 O -0.459 6.459 4 N -0.309 5.309 5 C 0.037 3.963 6 C -0.162 4.162 7 C -0.112 4.112 8 C -0.102 4.102 9 C -0.027 4.027 10 N -0.323 5.323 11 C -0.055 4.055 12 C -0.091 4.091 13 H 0.068 0.932 14 C -0.186 4.186 15 C -0.044 4.044 16 C -0.556 4.556 17 H 0.052 0.948 18 C -0.197 4.197 19 N -0.595 5.595 20 Si 0.773 3.227 21 H -0.192 1.192 22 H -0.171 1.171 23 H -0.213 1.213 24 C -0.115 4.115 25 C -0.160 4.160 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.133 0.867 29 H 0.269 0.731 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.094 0.906 33 H 0.068 0.932 34 H 0.164 0.836 35 H 0.083 0.917 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.162 0.838 44 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -26.546 5.824 -18.173 32.694 hybrid contribution 1.058 -0.662 -0.263 1.276 sum -25.488 5.162 -18.436 31.878 Atomic orbital electron populations 1.21925 0.86786 1.06798 1.06545 1.21947 0.92741 0.82467 0.73693 1.90746 1.71948 1.33169 1.50076 1.43636 1.04450 1.10739 1.72103 1.17912 0.83977 0.97355 0.97059 1.21092 0.94934 1.00107 1.00058 1.21000 0.93177 0.98649 0.98346 1.19845 0.95319 0.96278 0.98791 1.20848 0.90824 0.99028 0.92025 1.60500 1.10534 1.18798 1.42453 1.21913 0.87314 0.99638 0.96587 1.20893 0.95601 0.95579 0.97027 0.93195 1.21659 1.00211 0.95933 1.00811 1.19562 0.94131 0.95824 0.94925 1.21460 0.93117 1.32803 1.08233 0.94783 1.26029 1.01638 0.95875 0.96185 1.70081 1.19412 1.45110 1.24937 0.85671 0.78194 0.80103 0.78734 1.19168 1.17094 1.21287 1.21140 0.94353 0.97921 0.98072 1.21122 0.93800 1.00332 1.00774 0.86947 0.88659 0.86654 0.73064 0.86668 0.86065 0.90650 0.93193 0.83566 0.91658 0.94492 0.94749 0.91698 0.92958 0.96640 0.96307 0.92718 0.83783 0.82619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.76 10.31 71.23 0.73 -0.03 16 2 C 0.50 7.76 7.68 87.66 0.67 8.43 16 3 O -0.58 -15.37 14.78 -3.04 -0.04 -15.42 16 4 N -0.66 -8.31 5.34 -303.51 -1.62 -9.93 16 5 C 0.13 2.52 6.28 38.15 0.24 2.75 16 6 C -0.14 -3.46 8.66 22.39 0.19 -3.27 16 7 C -0.09 -2.26 9.69 22.25 0.22 -2.05 16 8 C -0.10 -2.23 5.39 -19.84 -0.11 -2.33 16 9 C 0.10 2.27 5.81 85.56 0.50 2.77 16 10 N -0.69 -18.50 6.49 -517.92 -3.36 -21.87 16 11 C 0.07 2.29 5.14 86.30 0.44 2.74 16 12 C -0.07 -2.81 2.54 -10.80 -0.03 -2.84 16 13 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 14 C -0.13 -4.62 8.77 71.98 0.63 -3.99 16 15 C -0.01 -0.31 3.51 29.84 0.10 -0.20 16 16 C -0.52 -30.14 8.96 25.60 0.23 -29.91 16 17 H 0.03 2.18 7.30 -2.91 -0.02 2.16 16 18 C 0.00 -0.08 5.47 84.65 0.46 0.38 16 19 N -0.95 -60.88 13.96 21.45 0.30 -60.58 16 20 Si 0.95 45.01 27.47 68.60 1.88 46.90 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 H -0.25 -10.90 6.54 99.48 0.65 -10.25 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 C -0.10 -1.70 9.69 22.25 0.22 -1.49 16 25 C -0.14 -2.19 9.96 22.39 0.22 -1.97 16 26 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.09 0.53 8.14 -2.39 -0.02 0.52 16 28 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 29 H 0.43 1.73 8.82 -92.71 -0.82 0.91 16 30 H 0.12 3.13 6.41 -2.91 -0.02 3.11 16 31 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 33 H 0.05 0.99 8.08 -2.39 -0.02 0.97 16 34 H 0.34 8.63 6.98 -89.69 -0.63 8.00 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.03 1.44 6.95 -2.39 -0.02 1.43 16 38 H 0.06 1.91 6.68 -2.39 -0.02 1.89 16 39 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.02 0.72 7.20 -2.39 -0.02 0.70 16 41 H 0.02 0.85 7.57 -2.39 -0.02 0.83 16 42 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 43 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -77.29 360.21 1.39 -75.91 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: -0.50 Total: 15.98 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 4.73 Total: -31.00 kcal Atomic # 7 Polarization: -87.69 SS G_CDS: -4.68 Total: -92.37 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: -0.04 Total: -15.42 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.90 kcal Total: -77.29 1.39 -75.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602507038.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.090 kcal (2) G-P(sol) polarization free energy of solvation -77.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds