Wall clock time and date at job start Tue Mar 31 2020 08:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 119.99933 * 2 1 4 4 N 1.34779 * 120.00368 * 179.97438 * 2 1 3 5 5 C 1.39918 * 120.00078 * 184.62513 * 4 2 1 6 6 C 1.38896 * 120.07467 * 324.88883 * 5 4 2 7 7 C 1.38083 * 119.93210 * 180.02562 * 6 5 4 8 8 C 1.38310 * 120.07316 * 0.02562 * 7 6 5 9 9 C 1.38261 * 120.13693 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.96168 * 180.27504 * 9 8 7 11 11 N 1.46896 * 109.47668 * 269.72440 * 10 9 8 12 12 C 1.46895 * 111.00570 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47342 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46992 * 55.00548 * 13 12 11 15 15 C 1.52996 * 109.47285 * 295.00075 * 13 12 11 16 16 C 1.53003 * 109.46911 * 175.00073 * 13 12 11 17 17 C 1.50706 * 109.46664 * 185.00454 * 16 13 12 18 18 H 1.07996 * 120.00461 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99421 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00624 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99637 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47186 * 89.99747 * 21 19 17 23 23 H 1.48494 * 109.46930 * 209.99824 * 21 19 17 24 24 H 1.48501 * 109.46949 * 329.99707 * 21 19 17 25 25 C 1.38134 * 120.07230 * 359.97438 * 9 8 7 26 26 H 1.09005 * 109.46833 * 239.99568 * 1 2 3 27 27 H 1.08996 * 109.47053 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46869 * 120.00241 * 1 2 3 29 29 H 0.97004 * 119.99466 * 4.62678 * 4 2 1 30 30 H 1.07997 * 120.02683 * 0.04969 * 6 5 4 31 31 H 1.07998 * 119.96475 * 180.02562 * 7 6 5 32 32 H 1.07994 * 119.92864 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47139 * 29.72863 * 10 9 8 34 34 H 1.09006 * 109.47262 * 149.72641 * 10 9 8 35 35 H 1.00902 * 110.99643 * 303.95787 * 11 10 9 36 36 H 1.09000 * 109.47083 * 300.00039 * 12 11 10 37 37 H 1.09004 * 109.47208 * 59.99853 * 12 11 10 38 38 H 1.09007 * 109.46959 * 60.00105 * 15 13 12 39 39 H 1.08997 * 109.47048 * 179.97438 * 15 13 12 40 40 H 1.09000 * 109.47085 * 299.99928 * 15 13 12 41 41 H 1.09000 * 109.46855 * 304.99812 * 16 13 12 42 42 H 1.08994 * 109.46850 * 65.00317 * 16 13 12 43 43 H 0.96996 * 120.00600 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.03495 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5767 -1.1690 0.0982 6 6 4.3179 -0.1599 -0.5030 7 6 5.6952 -0.1649 -0.4052 8 6 6.3370 -1.1737 0.2902 9 6 5.6021 -2.1796 0.8898 10 6 6.3051 -3.2734 1.6518 11 7 6.6125 -4.3846 0.7416 12 6 7.3002 -5.4716 1.4512 13 6 7.6025 -6.6083 0.4728 14 1 8.1658 -6.2180 -0.3749 15 6 6.2894 -7.2165 -0.0239 16 6 8.4275 -7.6849 1.1810 17 6 8.8294 -8.7443 0.1874 18 1 8.5265 -8.6586 -0.8457 19 6 9.5831 -9.8235 0.5976 20 7 9.9517 -9.9282 1.8556 21 14 10.0808 -11.1371 -0.6338 22 1 11.3850 -10.7746 -1.2444 23 1 10.2054 -12.4441 0.0599 24 1 9.0477 -11.2369 -1.6959 25 6 4.2239 -2.1797 0.7965 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 1.6983 -2.0059 -0.0669 30 1 3.8173 0.6280 -1.0462 31 1 6.2720 0.6197 -0.8722 32 1 7.4144 -1.1755 0.3649 33 1 7.2308 -2.8839 2.0754 34 1 5.6596 -3.6294 2.4548 35 1 5.7770 -4.7211 0.2867 36 1 8.2329 -5.0971 1.8730 37 1 6.6621 -5.8429 2.2531 38 1 5.7017 -6.4495 -0.5285 39 1 6.5048 -8.0260 -0.7213 40 1 5.7262 -7.6068 0.8237 41 1 9.3210 -7.2331 1.6118 42 1 7.8309 -8.1372 1.9731 43 1 10.4816 -10.6877 2.1443 44 1 3.6505 -2.9661 1.2648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602514136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:15 Heat of formation + Delta-G solvation = -30.037783 kcal Electronic energy + Delta-G solvation = -21889.306797 eV Core-core repulsion = 18612.566962 eV Total energy + Delta-G solvation = -3276.739835 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77119 -38.91043 -36.91302 -35.20309 -34.02296 -32.24624 -31.13837 -30.72090 -28.83308 -27.00159 -26.13574 -24.38407 -22.76975 -22.41435 -21.89991 -20.29154 -18.99195 -17.90306 -17.10025 -16.39491 -16.34974 -15.89042 -15.52279 -14.78477 -14.71258 -14.52986 -14.23528 -13.92058 -13.70495 -13.19218 -13.16949 -12.97809 -12.68903 -12.54788 -12.23833 -12.03598 -11.78221 -11.59653 -11.44767 -11.20099 -10.89480 -10.72780 -10.57662 -10.33713 -10.20664 -10.11713 -9.72190 -9.19181 -8.99286 -8.88739 -8.32548 -8.30626 -8.13137 -5.97189 -3.98295 1.14116 1.26936 2.22122 2.72571 3.33449 3.39681 3.42736 3.65209 4.29595 4.45960 4.56028 4.72854 4.77947 4.82511 4.86579 5.05090 5.21604 5.25788 5.35587 5.38571 5.43712 5.57604 5.61261 5.77810 5.82697 5.90991 6.04922 6.12914 6.20469 6.25035 6.40558 6.45860 6.55210 6.57770 6.89024 6.94451 7.02633 7.10464 7.17240 7.34654 7.63570 7.70576 7.72768 7.86453 8.03063 8.46904 9.08066 9.65038 11.14291 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031804 B = 0.002319 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.192166 B =12069.010150 C =12421.501082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.509 3.491 3 O -0.528 6.528 4 N -0.674 5.674 5 C 0.136 3.864 6 C -0.123 4.123 7 C -0.105 4.105 8 C -0.109 4.109 9 C -0.058 4.058 10 C 0.096 3.904 11 N -0.684 5.684 12 C 0.064 3.936 13 C -0.084 4.084 14 H 0.066 0.934 15 C -0.134 4.134 16 C 0.028 3.972 17 C -0.512 4.512 18 H 0.056 0.944 19 C 0.054 3.946 20 N -0.897 5.897 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.288 1.288 24 H -0.274 1.274 25 C -0.138 4.138 26 H 0.091 0.909 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.411 0.589 30 H 0.135 0.865 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.081 0.919 34 H 0.035 0.965 35 H 0.338 0.662 36 H 0.068 0.932 37 H 0.024 0.976 38 H 0.031 0.969 39 H 0.062 0.938 40 H 0.040 0.960 41 H 0.015 0.985 42 H 0.014 0.986 43 H 0.259 0.741 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.056 18.855 -2.376 26.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.297 3.703 3 O -0.403 6.403 4 N -0.319 5.319 5 C 0.042 3.958 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.128 4.128 9 C -0.059 4.059 10 C -0.033 4.033 11 N -0.316 5.316 12 C -0.065 4.065 13 C -0.103 4.103 14 H 0.084 0.916 15 C -0.191 4.191 16 C -0.010 4.010 17 C -0.551 4.551 18 H 0.074 0.926 19 C -0.146 4.146 20 N -0.537 5.537 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C -0.159 4.159 26 H 0.110 0.890 27 H 0.114 0.886 28 H 0.110 0.890 29 H 0.247 0.753 30 H 0.153 0.847 31 H 0.143 0.857 32 H 0.144 0.856 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.157 0.843 36 H 0.087 0.913 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.081 0.919 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.020 19.792 -2.457 26.219 hybrid contribution -0.670 -1.692 -0.060 1.821 sum -17.690 18.100 -2.517 25.434 Atomic orbital electron populations 1.21929 0.90730 1.05983 1.04624 1.21014 0.90893 0.83170 0.75194 1.90734 1.70513 1.31323 1.47766 1.43568 1.05389 1.09904 1.73089 1.17673 0.82238 0.97455 0.98404 1.21216 0.93846 0.99202 1.00029 1.21070 0.93927 0.98481 0.98853 1.21084 1.00203 0.93906 0.97606 1.19640 0.92386 0.95943 0.97948 1.20897 0.98975 0.90455 0.93004 1.60615 1.29900 1.09794 1.31260 1.22173 0.97736 0.90889 0.95676 1.21223 0.96726 0.94480 0.97864 0.91594 1.21740 0.96925 0.99866 1.00584 1.19115 0.94266 0.92105 0.95495 1.21238 1.32330 1.06103 0.95395 0.92564 1.25027 0.96238 0.98230 0.95117 1.69961 1.37949 1.30562 1.15197 0.86625 0.78956 0.81236 0.81367 1.20715 1.21348 1.19933 1.20774 0.94519 0.99719 1.00919 0.89023 0.88578 0.89040 0.75308 0.84732 0.85736 0.85617 0.90076 0.94698 0.84280 0.91340 0.95801 0.95010 0.91851 0.94063 0.96635 0.96761 0.93107 0.86027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.68 10.32 36.00 0.37 -0.31 16 2 C 0.51 4.36 7.78 -10.99 -0.09 4.28 16 3 O -0.53 -6.80 14.52 5.55 0.08 -6.72 16 4 N -0.67 -5.28 5.34 -9.86 -0.05 -5.34 16 5 C 0.14 1.46 6.30 -83.70 -0.53 0.93 16 6 C -0.12 -1.45 8.70 -39.39 -0.34 -1.79 16 7 C -0.10 -1.16 10.04 -39.61 -0.40 -1.56 16 8 C -0.11 -1.26 9.70 -39.55 -0.38 -1.64 16 9 C -0.06 -0.68 5.39 -104.65 -0.56 -1.25 16 10 C 0.10 1.18 5.81 -4.98 -0.03 1.15 16 11 N -0.68 -9.93 6.49 -115.06 -0.75 -10.68 16 12 C 0.06 1.08 5.14 -3.83 -0.02 1.07 16 13 C -0.08 -1.70 2.55 -90.62 -0.23 -1.93 16 14 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 15 C -0.13 -2.46 8.77 37.16 0.33 -2.13 16 16 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 17 C -0.51 -14.31 8.41 -34.44 -0.29 -14.59 16 18 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 19 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.94 13.29 55.43 0.74 -26.21 16 21 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 25 C -0.14 -1.48 9.62 -39.39 -0.38 -1.85 16 26 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.10 0.41 8.12 -51.93 -0.42 -0.02 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.41 1.87 8.82 -40.82 -0.36 1.51 16 30 H 0.13 1.66 6.23 -52.49 -0.33 1.34 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.08 0.99 8.08 -51.93 -0.42 0.57 16 34 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.34 4.70 6.98 -39.29 -0.27 4.43 16 36 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.03 0.49 6.68 -51.93 -0.35 0.14 16 39 H 0.06 1.27 6.95 -51.93 -0.36 0.91 16 40 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 363.54 15.07 5.48 5.48 Total: -1.00 -33.16 363.54 -9.38 -42.54 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.09 Total: 1.85 kcal Atomic # 6 Polarization: -14.82 SS G_CDS: -2.77 Total: -17.60 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: -0.06 Total: -42.22 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: 0.08 Total: -6.72 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.16 -9.38 -42.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602514136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.500 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds