Wall clock time and date at job start Tue Mar 31 2020 08:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21286 * 119.99933 * 2 1 4 4 N 1.34779 * 120.00368 * 179.97438 * 2 1 3 5 5 C 1.39918 * 120.00078 * 184.62513 * 4 2 1 6 6 C 1.38896 * 120.07467 * 324.88883 * 5 4 2 7 7 C 1.38083 * 119.93210 * 180.02562 * 6 5 4 8 8 C 1.38310 * 120.07316 * 0.02562 * 7 6 5 9 9 C 1.38261 * 120.13693 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.96168 * 180.27504 * 9 8 7 11 11 N 1.46896 * 109.47668 * 269.72440 * 10 9 8 12 12 C 1.46895 * 111.00570 * 179.97438 * 11 10 9 13 13 C 1.53002 * 109.47342 * 179.97438 * 12 11 10 14 14 H 1.09004 * 109.46992 * 55.00548 * 13 12 11 15 15 C 1.52996 * 109.47285 * 295.00075 * 13 12 11 16 16 C 1.53003 * 109.46911 * 175.00073 * 13 12 11 17 17 C 1.50706 * 109.46664 * 185.00454 * 16 13 12 18 18 H 1.07996 * 120.00461 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99421 * 180.02562 * 17 16 13 20 20 N 1.31511 * 120.00624 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 119.99637 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47186 * 89.99747 * 21 19 17 23 23 H 1.48494 * 109.46930 * 209.99824 * 21 19 17 24 24 H 1.48501 * 109.46949 * 329.99707 * 21 19 17 25 25 C 1.38134 * 120.07230 * 359.97438 * 9 8 7 26 26 H 1.09005 * 109.46833 * 239.99568 * 1 2 3 27 27 H 1.08996 * 109.47053 * 0.02562 * 1 2 3 28 28 H 1.08995 * 109.46869 * 120.00241 * 1 2 3 29 29 H 0.97004 * 119.99466 * 4.62678 * 4 2 1 30 30 H 1.07997 * 120.02683 * 0.04969 * 6 5 4 31 31 H 1.07998 * 119.96475 * 180.02562 * 7 6 5 32 32 H 1.07994 * 119.92864 * 179.97438 * 8 7 6 33 33 H 1.08999 * 109.47139 * 29.72863 * 10 9 8 34 34 H 1.09006 * 109.47262 * 149.72641 * 10 9 8 35 35 H 1.00902 * 110.99643 * 303.95787 * 11 10 9 36 36 H 1.09000 * 109.47083 * 300.00039 * 12 11 10 37 37 H 1.09004 * 109.47208 * 59.99853 * 12 11 10 38 38 H 1.09007 * 109.46959 * 60.00105 * 15 13 12 39 39 H 1.08997 * 109.47048 * 179.97438 * 15 13 12 40 40 H 1.09000 * 109.47085 * 299.99928 * 15 13 12 41 41 H 1.09000 * 109.46855 * 304.99812 * 16 13 12 42 42 H 1.08994 * 109.46850 * 65.00317 * 16 13 12 43 43 H 0.96996 * 120.00600 * 179.97438 * 20 19 17 44 44 H 1.08005 * 120.03495 * 179.97438 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.5767 -1.1690 0.0982 6 6 4.3179 -0.1599 -0.5030 7 6 5.6952 -0.1649 -0.4052 8 6 6.3370 -1.1737 0.2902 9 6 5.6021 -2.1796 0.8898 10 6 6.3051 -3.2734 1.6518 11 7 6.6125 -4.3846 0.7416 12 6 7.3002 -5.4716 1.4512 13 6 7.6025 -6.6083 0.4728 14 1 8.1658 -6.2180 -0.3749 15 6 6.2894 -7.2165 -0.0239 16 6 8.4275 -7.6849 1.1810 17 6 8.8294 -8.7443 0.1874 18 1 8.5265 -8.6586 -0.8457 19 6 9.5831 -9.8235 0.5976 20 7 9.9517 -9.9282 1.8556 21 14 10.0808 -11.1371 -0.6338 22 1 11.3850 -10.7746 -1.2444 23 1 10.2054 -12.4441 0.0599 24 1 9.0477 -11.2369 -1.6959 25 6 4.2239 -2.1797 0.7965 26 1 -0.3633 -0.5139 0.8900 27 1 -0.3633 1.0276 -0.0005 28 1 -0.3633 -0.5139 -0.8899 29 1 1.6983 -2.0059 -0.0669 30 1 3.8173 0.6280 -1.0462 31 1 6.2720 0.6197 -0.8722 32 1 7.4144 -1.1755 0.3649 33 1 7.2308 -2.8839 2.0754 34 1 5.6596 -3.6294 2.4548 35 1 5.7770 -4.7211 0.2867 36 1 8.2329 -5.0971 1.8730 37 1 6.6621 -5.8429 2.2531 38 1 5.7017 -6.4495 -0.5285 39 1 6.5048 -8.0260 -0.7213 40 1 5.7262 -7.6068 0.8237 41 1 9.3210 -7.2331 1.6118 42 1 7.8309 -8.1372 1.9731 43 1 10.4816 -10.6877 2.1443 44 1 3.6505 -2.9661 1.2648 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602514136.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:03:04 Heat of formation + Delta-G solvation = -51.523393 kcal Electronic energy + Delta-G solvation = -21890.238482 eV Core-core repulsion = 18612.566962 eV Total energy + Delta-G solvation = -3277.671521 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.06 seconds Orbital eigenvalues (eV) -41.51159 -39.75768 -38.29021 -36.18156 -35.41217 -34.03782 -31.88852 -31.74790 -29.49501 -28.84902 -27.41619 -25.85570 -23.95986 -23.53148 -22.90430 -21.12207 -20.58014 -18.71099 -18.45390 -17.79777 -17.16808 -16.83129 -16.59940 -16.49882 -15.71310 -15.59591 -15.47180 -15.02835 -14.62112 -14.49959 -14.24068 -14.03000 -13.67523 -13.44078 -13.36599 -13.23821 -13.07485 -12.95271 -12.76338 -12.56925 -12.50554 -12.20164 -12.17377 -11.87521 -11.48089 -11.34909 -11.05345 -10.94603 -10.86388 -10.51977 -9.81831 -9.30019 -9.10919 -8.16110 -6.24911 0.31017 0.39484 1.41149 1.42095 1.52852 1.57076 2.12657 2.43059 2.77785 3.17285 3.43820 3.79346 3.84719 3.96163 4.18268 4.24367 4.29119 4.40273 4.43340 4.48167 4.49200 4.60047 4.65875 4.70537 4.76876 4.81650 4.90003 5.04043 5.06463 5.11227 5.26267 5.33028 5.40325 5.40728 5.50979 5.55710 5.57523 5.69672 5.82291 5.91380 6.04115 6.11179 6.33054 6.43968 6.51546 6.91216 7.12663 7.43145 8.95803 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031804 B = 0.002319 C = 0.002254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.192166 B =12069.010150 C =12421.501082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.502 3.498 3 O -0.578 6.578 4 N -0.664 5.664 5 C 0.131 3.869 6 C -0.139 4.139 7 C -0.109 4.109 8 C -0.120 4.120 9 C -0.066 4.066 10 C 0.100 3.900 11 N -0.684 5.684 12 C 0.077 3.923 13 C -0.076 4.076 14 H 0.055 0.945 15 C -0.126 4.126 16 C 0.032 3.968 17 C -0.527 4.527 18 H 0.061 0.939 19 C -0.004 4.004 20 N -0.935 5.935 21 Si 0.960 3.040 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.263 1.263 25 C -0.137 4.137 26 H 0.114 0.886 27 H 0.092 0.908 28 H 0.116 0.884 29 H 0.428 0.572 30 H 0.124 0.876 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.079 0.921 34 H 0.046 0.954 35 H 0.345 0.655 36 H 0.058 0.942 37 H 0.027 0.973 38 H 0.066 0.934 39 H 0.043 0.957 40 H 0.042 0.958 41 H -0.014 1.014 42 H -0.009 1.009 43 H 0.261 0.739 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.927 18.617 -3.312 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.293 3.707 3 O -0.457 6.457 4 N -0.310 5.310 5 C 0.036 3.964 6 C -0.159 4.159 7 C -0.128 4.128 8 C -0.139 4.139 9 C -0.068 4.068 10 C -0.029 4.029 11 N -0.317 5.317 12 C -0.052 4.052 13 C -0.095 4.095 14 H 0.073 0.927 15 C -0.183 4.183 16 C -0.005 4.005 17 C -0.566 4.566 18 H 0.079 0.921 19 C -0.201 4.201 20 N -0.576 5.576 21 Si 0.785 3.215 22 H -0.201 1.201 23 H -0.210 1.210 24 H -0.187 1.187 25 C -0.158 4.158 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.135 0.865 29 H 0.267 0.733 30 H 0.142 0.858 31 H 0.157 0.843 32 H 0.148 0.852 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.164 0.836 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.005 0.995 42 H 0.010 0.990 43 H 0.070 0.930 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.929 19.536 -3.405 27.415 hybrid contribution -0.112 -1.560 0.248 1.584 sum -19.041 17.976 -3.157 26.375 Atomic orbital electron populations 1.21952 0.86823 1.06548 1.06869 1.21918 0.92689 0.82389 0.73688 1.90716 1.71827 1.33068 1.50111 1.43572 1.04335 1.10819 1.72316 1.17814 0.83685 0.96997 0.97856 1.21296 0.94318 0.99559 1.00717 1.21251 0.93953 0.98806 0.98751 1.21214 1.00577 0.94209 0.97947 1.19642 0.92960 0.95839 0.98316 1.20876 0.99331 0.89751 0.92920 1.60513 1.30349 1.09246 1.31563 1.21860 0.97865 0.90608 0.94864 1.21016 0.96822 0.94061 0.97564 0.92681 1.21644 0.96138 1.00149 1.00404 1.19012 0.93558 0.93120 0.94849 1.21645 1.32161 1.06767 0.95988 0.92130 1.25954 0.96313 1.00784 0.97041 1.70094 1.38799 1.31474 1.17231 0.85513 0.78849 0.78095 0.78997 1.20072 1.20953 1.18692 1.20937 0.94234 1.00036 1.00548 0.86723 0.88926 0.86539 0.73257 0.85791 0.84349 0.85211 0.90209 0.93565 0.83567 0.92299 0.95462 0.91546 0.93739 0.93868 0.99526 0.99034 0.92982 0.83990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 10.32 71.24 0.74 -0.12 16 2 C 0.50 7.93 7.78 87.66 0.68 8.61 16 3 O -0.58 -14.92 14.52 -3.05 -0.04 -14.97 16 4 N -0.66 -9.13 5.34 -303.50 -1.62 -10.75 16 5 C 0.13 2.64 6.30 38.16 0.24 2.88 16 6 C -0.14 -3.23 8.70 22.39 0.19 -3.04 16 7 C -0.11 -2.38 10.04 22.25 0.22 -2.16 16 8 C -0.12 -2.69 9.70 22.29 0.22 -2.47 16 9 C -0.07 -1.46 5.39 -19.88 -0.11 -1.56 16 10 C 0.10 2.29 5.81 85.56 0.50 2.78 16 11 N -0.68 -18.65 6.49 -517.94 -3.36 -22.01 16 12 C 0.08 2.57 5.14 86.31 0.44 3.01 16 13 C -0.08 -3.04 2.55 -10.79 -0.03 -3.07 16 14 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 15 C -0.13 -4.45 8.77 71.98 0.63 -3.81 16 16 C 0.03 1.68 4.45 29.85 0.13 1.81 16 17 C -0.53 -29.75 8.41 25.60 0.22 -29.53 16 18 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 19 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 20 N -0.94 -57.13 13.29 21.45 0.28 -56.85 16 21 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 25 C -0.14 -2.63 9.62 22.39 0.22 -2.42 16 26 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 27 H 0.09 0.61 8.12 -2.39 -0.02 0.59 16 28 H 0.12 0.07 8.14 -2.39 -0.02 0.05 16 29 H 0.43 2.68 8.82 -92.71 -0.82 1.86 16 30 H 0.12 3.14 6.23 -2.91 -0.02 3.13 16 31 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 32 H 0.13 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 34 H 0.05 0.98 8.08 -2.38 -0.02 0.96 16 35 H 0.34 8.64 6.98 -89.69 -0.63 8.01 16 36 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 37 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 1.87 6.68 -2.38 -0.02 1.86 16 39 H 0.04 1.72 6.95 -2.39 -0.02 1.71 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.14 2.09 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -73.03 363.54 1.59 -71.44 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -0.45 Total: 15.47 kcal Atomic # 6 Polarization: -33.60 SS G_CDS: 4.76 Total: -28.84 kcal Atomic # 7 Polarization: -84.91 SS G_CDS: -4.69 Total: -89.60 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -0.04 Total: -14.97 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -73.03 1.59 -71.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602514136.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.916 kcal (2) G-P(sol) polarization free energy of solvation -73.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds