Wall clock time and date at job start Tue Mar 31 2020 08:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46522 * 2 1 4 4 C 1.53000 * 109.46930 * 119.99574 * 2 1 3 5 5 C 1.50696 * 109.47179 * 295.00098 * 4 2 1 6 6 H 1.08000 * 120.00258 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99584 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00403 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99455 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46988 * 60.00762 * 9 7 5 11 11 H 1.48500 * 109.46623 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47195 * 300.00073 * 9 7 5 13 13 C 1.52995 * 109.47370 * 239.99797 * 2 1 3 14 14 N 1.46903 * 109.47029 * 64.99688 * 13 2 1 15 15 C 1.46904 * 111.00135 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47256 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47331 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99809 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00241 * 180.02562 * 17 16 15 20 20 C 1.39925 * 120.00094 * 175.37480 * 19 17 16 21 21 C 1.38868 * 120.07284 * 214.81138 * 20 19 17 22 22 C 1.38117 * 119.93048 * 179.74796 * 21 20 19 23 23 C 1.38280 * 120.06700 * 0.52914 * 22 21 20 24 24 C 1.38279 * 120.14343 * 359.74648 * 23 22 21 25 25 C 1.38116 * 120.07168 * 359.97253 * 24 23 22 26 26 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47443 * 299.99991 * 1 2 3 28 28 H 1.08996 * 109.47433 * 60.00579 * 1 2 3 29 29 H 1.09003 * 109.47196 * 55.00615 * 4 2 1 30 30 H 1.08999 * 109.46533 * 174.99938 * 4 2 1 31 31 H 0.96999 * 120.00352 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47025 * 304.99986 * 13 2 1 33 33 H 1.08992 * 109.47510 * 184.99791 * 13 2 1 34 34 H 1.00903 * 111.00249 * 303.95106 * 14 13 2 35 35 H 1.09000 * 109.46959 * 300.00655 * 15 14 13 36 36 H 1.09008 * 109.46921 * 60.00312 * 15 14 13 37 37 H 1.09000 * 109.47761 * 300.00273 * 16 15 14 38 38 H 1.09008 * 109.46812 * 60.00354 * 16 15 14 39 39 H 0.96999 * 119.99801 * 355.38213 * 19 17 16 40 40 H 1.08002 * 120.03296 * 0.02562 * 21 20 19 41 41 H 1.07998 * 119.96762 * 180.27014 * 22 21 20 42 42 H 1.08001 * 119.92786 * 179.72309 * 23 22 21 43 43 H 1.08002 * 119.96754 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.03726 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6754 -1.5191 3.8513 9 14 1.4987 0.5631 5.2496 10 1 0.0188 0.6707 5.3089 11 1 1.9936 -0.1370 6.4621 12 1 2.0918 1.9231 5.1870 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1259 -0.6266 -3.6671 16 6 1.7024 0.1907 -4.8892 17 6 2.1886 -0.4907 -6.1424 18 8 2.8120 -1.5283 -6.0656 19 7 1.9306 0.0528 -7.3484 20 6 2.4636 -0.5264 -8.5052 21 6 2.8512 0.2762 -9.5702 22 6 3.3818 -0.2983 -10.7086 23 6 3.5171 -1.6719 -10.7930 24 6 3.1268 -2.4742 -9.7366 25 6 2.6009 -1.9056 -8.5931 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 2.9227 -1.8420 4.7319 32 1 1.6055 -1.7198 -1.2950 33 1 3.1263 -0.7994 -1.2055 34 1 0.6528 0.1791 -2.4753 35 1 3.2128 -0.7038 -3.6399 36 1 1.6922 -1.6247 -3.7300 37 1 0.6154 0.2675 -4.9162 38 1 2.1357 1.1890 -4.8265 39 1 1.3756 0.8455 -7.4144 40 1 2.7420 1.3487 -9.5064 41 1 3.6874 0.3256 -11.5355 42 1 3.9281 -2.1190 -11.6861 43 1 3.2341 -3.5467 -9.8054 44 1 2.2958 -2.5328 -7.7685 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602545721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:53 Heat of formation + Delta-G solvation = -29.193762 kcal Electronic energy + Delta-G solvation = -21555.633022 eV Core-core repulsion = 18278.929787 eV Total energy + Delta-G solvation = -3276.703235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83949 -38.80187 -37.04066 -35.10601 -34.35682 -32.29672 -31.21825 -30.78201 -29.22995 -26.84002 -25.49798 -23.81903 -23.07885 -22.34396 -21.74111 -20.54933 -18.94920 -18.12905 -17.32014 -16.53790 -16.51919 -16.12332 -15.32009 -14.97445 -14.75532 -14.57832 -14.23694 -13.85927 -13.75043 -13.54467 -13.26795 -13.08332 -12.49407 -12.27731 -12.15549 -12.01479 -11.61436 -11.58981 -11.38184 -11.21674 -10.86675 -10.71864 -10.68680 -10.33626 -10.20164 -10.06171 -9.70166 -9.23577 -9.13983 -8.95747 -8.48317 -8.30904 -8.18180 -5.95399 -3.96795 0.94670 1.09688 2.29423 2.67233 3.35670 3.40131 3.42374 3.51132 4.21540 4.48587 4.56695 4.62893 4.64527 4.85537 4.86718 5.02773 5.10158 5.24286 5.26478 5.38032 5.40078 5.69870 5.71645 5.77086 5.89735 5.94970 6.00604 6.01854 6.07181 6.18291 6.25576 6.28204 6.46808 6.56928 6.72402 6.92836 7.00789 7.11346 7.18245 7.33382 7.62210 7.72142 7.79858 7.88185 8.04733 8.48212 9.09371 9.66344 11.16043 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.053190 B = 0.001952 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.290312 B =14343.950318 C =14606.673840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.085 4.085 3 H 0.065 0.935 4 C 0.027 3.973 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.065 3.935 14 N -0.692 5.692 15 C 0.072 3.928 16 C -0.137 4.137 17 C 0.516 3.484 18 O -0.517 6.517 19 N -0.678 5.678 20 C 0.145 3.855 21 C -0.148 4.148 22 C -0.103 4.103 23 C -0.138 4.138 24 C -0.102 4.102 25 C -0.122 4.122 26 H 0.041 0.959 27 H 0.063 0.937 28 H 0.031 0.969 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.025 0.975 33 H 0.068 0.932 34 H 0.336 0.664 35 H 0.079 0.921 36 H 0.035 0.965 37 H 0.095 0.905 38 H 0.107 0.893 39 H 0.412 0.588 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.658 3.380 -29.652 29.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.103 4.103 3 H 0.084 0.916 4 C -0.010 4.010 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.323 5.323 15 C -0.058 4.058 16 C -0.177 4.177 17 C 0.304 3.696 18 O -0.391 6.391 19 N -0.324 5.324 20 C 0.051 3.949 21 C -0.168 4.168 22 C -0.122 4.122 23 C -0.157 4.157 24 C -0.121 4.121 25 C -0.142 4.142 26 H 0.060 0.940 27 H 0.082 0.918 28 H 0.050 0.950 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.053 0.947 37 H 0.113 0.887 38 H 0.125 0.875 39 H 0.248 0.752 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.140 0.860 43 H 0.143 0.857 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.590 2.948 -29.328 29.519 hybrid contribution -1.080 0.148 0.787 1.345 sum -2.670 3.097 -28.541 28.832 Atomic orbital electron populations 1.21746 0.96700 1.00451 1.00234 1.21231 0.94852 1.00103 0.94157 0.91611 1.19110 0.96196 0.95380 0.90321 1.21199 1.34745 1.08278 0.90994 0.92610 1.25029 0.95359 0.95102 0.99103 1.69953 1.38969 1.21207 1.23477 0.86682 0.78811 0.80136 0.82493 1.20337 1.21394 1.20287 1.22137 1.00546 0.94471 0.89191 1.60579 1.19384 1.50830 1.01547 1.21643 1.01617 0.94678 0.87878 1.21649 1.02909 1.01676 0.91443 1.21018 0.78930 0.85047 0.84629 1.90726 1.38981 1.22642 1.86765 1.43620 1.51919 1.31979 1.04876 1.17812 0.97928 0.92314 0.86805 1.20923 1.02199 0.99411 0.94265 1.20944 0.98784 0.95079 0.97375 1.21157 1.01597 0.93863 0.99068 1.21110 0.97990 1.00100 0.92906 1.21353 1.00671 0.93466 0.98717 0.94020 0.91841 0.94997 0.96731 0.96619 0.93038 0.95650 0.91324 0.84536 0.90272 0.94667 0.88660 0.87483 0.75247 0.85724 0.85731 0.86026 0.85718 0.84315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.46 8.77 37.16 0.33 -2.14 16 2 C -0.08 -1.73 2.54 -90.62 -0.23 -1.96 16 3 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.44 8.41 -34.44 -0.29 -14.73 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 9 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.14 5.14 -3.82 -0.02 1.12 16 14 N -0.69 -9.85 6.50 -113.78 -0.74 -10.59 16 15 C 0.07 0.91 4.97 -3.83 -0.02 0.89 16 16 C -0.14 -1.22 5.96 -27.88 -0.17 -1.38 16 17 C 0.52 5.40 7.67 -10.99 -0.08 5.32 16 18 O -0.52 -7.43 13.42 5.55 0.07 -7.36 16 19 N -0.68 -5.43 5.34 -9.86 -0.05 -5.49 16 20 C 0.15 1.38 6.30 -83.69 -0.53 0.85 16 21 C -0.15 -1.13 9.97 -39.39 -0.39 -1.53 16 22 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 23 C -0.14 -1.04 10.04 -39.55 -0.40 -1.44 16 24 C -0.10 -0.91 10.04 -39.61 -0.40 -1.30 16 25 C -0.12 -1.29 8.70 -39.39 -0.34 -1.64 16 26 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 1.26 6.95 -51.93 -0.36 0.90 16 28 H 0.03 0.48 6.68 -51.93 -0.35 0.13 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.34 4.33 6.98 -39.29 -0.27 4.06 16 35 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 36 H 0.04 0.48 8.10 -51.92 -0.42 0.06 16 37 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.11 0.84 8.14 -51.92 -0.42 0.42 16 39 H 0.41 1.87 8.82 -40.82 -0.36 1.51 16 40 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 44 H 0.14 1.67 6.23 -52.48 -0.33 1.35 16 LS Contribution 362.46 15.07 5.46 5.46 Total: -1.00 -33.07 362.46 -9.79 -42.86 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -7.09 Total: 1.79 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: -3.16 Total: -17.00 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.06 Total: -42.52 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: 0.07 Total: -7.36 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.07 -9.79 -42.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.669 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds