Wall clock time and date at job start Tue Mar 31 2020 08:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.46522 * 2 1 4 4 C 1.53000 * 109.46930 * 119.99574 * 2 1 3 5 5 C 1.50696 * 109.47179 * 295.00098 * 4 2 1 6 6 H 1.08000 * 120.00258 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99584 * 179.97438 * 5 4 2 8 8 N 1.31505 * 120.00403 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99455 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46988 * 60.00762 * 9 7 5 11 11 H 1.48500 * 109.46623 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47195 * 300.00073 * 9 7 5 13 13 C 1.52995 * 109.47370 * 239.99797 * 2 1 3 14 14 N 1.46903 * 109.47029 * 64.99688 * 13 2 1 15 15 C 1.46904 * 111.00135 * 179.97438 * 14 13 2 16 16 C 1.52994 * 109.47256 * 179.97438 * 15 14 13 17 17 C 1.50704 * 109.47331 * 180.02562 * 16 15 14 18 18 O 1.21290 * 119.99809 * 0.02562 * 17 16 15 19 19 N 1.34772 * 120.00241 * 180.02562 * 17 16 15 20 20 C 1.39925 * 120.00094 * 175.37480 * 19 17 16 21 21 C 1.38868 * 120.07284 * 214.81138 * 20 19 17 22 22 C 1.38117 * 119.93048 * 179.74796 * 21 20 19 23 23 C 1.38280 * 120.06700 * 0.52914 * 22 21 20 24 24 C 1.38279 * 120.14343 * 359.74648 * 23 22 21 25 25 C 1.38116 * 120.07168 * 359.97253 * 24 23 22 26 26 H 1.09007 * 109.46853 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47443 * 299.99991 * 1 2 3 28 28 H 1.08996 * 109.47433 * 60.00579 * 1 2 3 29 29 H 1.09003 * 109.47196 * 55.00615 * 4 2 1 30 30 H 1.08999 * 109.46533 * 174.99938 * 4 2 1 31 31 H 0.96999 * 120.00352 * 179.97438 * 8 7 5 32 32 H 1.09003 * 109.47025 * 304.99986 * 13 2 1 33 33 H 1.08992 * 109.47510 * 184.99791 * 13 2 1 34 34 H 1.00903 * 111.00249 * 303.95106 * 14 13 2 35 35 H 1.09000 * 109.46959 * 300.00655 * 15 14 13 36 36 H 1.09008 * 109.46921 * 60.00312 * 15 14 13 37 37 H 1.09000 * 109.47761 * 300.00273 * 16 15 14 38 38 H 1.09008 * 109.46812 * 60.00354 * 16 15 14 39 39 H 0.96999 * 119.99801 * 355.38213 * 19 17 16 40 40 H 1.08002 * 120.03296 * 0.02562 * 21 20 19 41 41 H 1.07998 * 119.96762 * 180.27014 * 22 21 20 42 42 H 1.08001 * 119.92786 * 179.72309 * 23 22 21 43 43 H 1.08002 * 119.96754 * 180.02562 * 24 23 22 44 44 H 1.08004 * 120.03726 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0799 0.9743 2.3757 7 6 1.9923 -0.4021 3.7283 8 7 2.6754 -1.5191 3.8513 9 14 1.4987 0.5631 5.2496 10 1 0.0188 0.6707 5.3089 11 1 1.9936 -0.1370 6.4621 12 1 2.0918 1.9231 5.1870 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0374 -2.4456 15 6 2.1259 -0.6266 -3.6671 16 6 1.7024 0.1907 -4.8892 17 6 2.1886 -0.4907 -6.1424 18 8 2.8120 -1.5283 -6.0656 19 7 1.9306 0.0528 -7.3484 20 6 2.4636 -0.5264 -8.5052 21 6 2.8512 0.2762 -9.5702 22 6 3.3818 -0.2983 -10.7086 23 6 3.5171 -1.6719 -10.7930 24 6 3.1268 -2.4742 -9.7366 25 6 2.6009 -1.9056 -8.5931 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 1.6054 -1.7198 1.2952 30 1 3.1263 -0.7994 1.2056 31 1 2.9227 -1.8420 4.7319 32 1 1.6055 -1.7198 -1.2950 33 1 3.1263 -0.7994 -1.2055 34 1 0.6528 0.1791 -2.4753 35 1 3.2128 -0.7038 -3.6399 36 1 1.6922 -1.6247 -3.7300 37 1 0.6154 0.2675 -4.9162 38 1 2.1357 1.1890 -4.8265 39 1 1.3756 0.8455 -7.4144 40 1 2.7420 1.3487 -9.5064 41 1 3.6874 0.3256 -11.5355 42 1 3.9281 -2.1190 -11.6861 43 1 3.2341 -3.5467 -9.8054 44 1 2.2958 -2.5328 -7.7685 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602545721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:04:46 Heat of formation + Delta-G solvation = -50.846410 kcal Electronic energy + Delta-G solvation = -21556.571951 eV Core-core repulsion = 18278.929787 eV Total energy + Delta-G solvation = -3277.642164 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 9.62 seconds Orbital eigenvalues (eV) -41.58496 -39.51944 -38.45423 -35.99387 -35.77208 -34.17782 -31.89598 -31.79028 -30.11442 -28.71744 -26.93438 -25.08514 -23.97365 -23.55652 -22.71009 -21.35171 -20.59788 -18.83599 -18.50379 -18.10200 -17.29009 -17.11758 -16.58087 -16.39128 -15.83254 -15.54630 -15.42905 -15.00443 -14.81917 -14.51823 -14.27793 -14.12481 -13.85459 -13.71404 -13.53870 -13.29503 -12.83517 -12.74227 -12.62685 -12.53294 -12.27771 -12.18904 -12.12925 -11.92500 -11.47800 -11.40110 -11.07255 -10.99162 -10.83101 -10.52364 -9.86384 -9.41875 -9.13823 -8.16298 -6.25963 0.30407 0.46683 1.41031 1.44296 1.51850 1.53347 1.98043 2.43087 2.88956 3.16897 3.22884 3.71278 3.96785 4.04178 4.08373 4.14157 4.27724 4.29667 4.31408 4.47713 4.52788 4.57007 4.63138 4.67821 4.74529 4.86388 4.92979 4.97103 5.04586 5.11792 5.25126 5.37077 5.39838 5.40469 5.50582 5.55819 5.56471 5.63052 5.79897 5.89556 5.99661 6.10174 6.30778 6.39221 6.51853 6.90225 7.09772 7.42318 8.95659 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.053190 B = 0.001952 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.290312 B =14343.950318 C =14606.673840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.075 4.075 3 H 0.061 0.939 4 C 0.030 3.970 5 C -0.529 4.529 6 H 0.064 0.936 7 C -0.006 4.006 8 N -0.937 5.937 9 Si 0.964 3.036 10 H -0.265 1.265 11 H -0.287 1.287 12 H -0.267 1.267 13 C 0.076 3.924 14 N -0.682 5.682 15 C 0.074 3.926 16 C -0.123 4.123 17 C 0.514 3.486 18 O -0.565 6.565 19 N -0.662 5.662 20 C 0.125 3.875 21 C -0.146 4.146 22 C -0.104 4.104 23 C -0.140 4.140 24 C -0.116 4.116 25 C -0.150 4.150 26 H 0.038 0.962 27 H 0.047 0.953 28 H 0.073 0.927 29 H -0.012 1.012 30 H -0.016 1.016 31 H 0.261 0.739 32 H 0.020 0.980 33 H 0.052 0.948 34 H 0.349 0.651 35 H 0.058 0.942 36 H 0.023 0.977 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.430 0.570 40 H 0.151 0.849 41 H 0.154 0.846 42 H 0.145 0.855 43 H 0.132 0.868 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.959 6.031 -31.420 32.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.094 4.094 3 H 0.080 0.920 4 C -0.007 4.007 5 C -0.567 4.567 6 H 0.083 0.917 7 C -0.203 4.203 8 N -0.578 5.578 9 Si 0.789 3.211 10 H -0.190 1.190 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.054 4.054 14 N -0.314 5.314 15 C -0.056 4.056 16 C -0.162 4.162 17 C 0.303 3.697 18 O -0.443 6.443 19 N -0.308 5.308 20 C 0.031 3.969 21 C -0.166 4.166 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.135 4.135 25 C -0.170 4.170 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.006 0.994 30 H 0.002 0.998 31 H 0.070 0.930 32 H 0.039 0.961 33 H 0.071 0.929 34 H 0.169 0.831 35 H 0.076 0.924 36 H 0.042 0.958 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.269 0.731 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.163 0.837 43 H 0.150 0.850 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.929 5.647 -31.137 31.781 hybrid contribution -0.633 -0.710 1.233 1.557 sum -3.562 4.938 -29.905 30.518 Atomic orbital electron populations 1.21662 0.94618 1.00666 1.01472 1.21021 0.96503 0.99078 0.92791 0.92037 1.19024 0.94123 0.94611 0.92954 1.21624 1.34502 1.08631 0.91933 0.91740 1.26010 0.95294 0.96134 1.02838 1.70105 1.40302 1.23053 1.24316 0.85516 0.78977 0.78707 0.77938 1.19030 1.21216 1.19201 1.21834 0.99477 0.94290 0.89755 1.60463 1.20346 1.49927 1.00713 1.21578 1.00324 0.94946 0.88756 1.21543 1.04859 1.01258 0.88577 1.21293 0.78265 0.84464 0.85693 1.90723 1.41333 1.24819 1.87439 1.43436 1.51453 1.32094 1.03862 1.18020 0.98891 0.92196 0.87772 1.21244 1.01192 1.00588 0.93567 1.21372 0.97686 0.95244 0.97958 1.21487 1.00843 0.94291 0.99262 1.21305 0.98229 1.00940 0.93009 1.21331 1.02532 0.94276 0.98864 0.94327 0.93430 0.90862 0.99393 0.99781 0.92995 0.96148 0.92921 0.83064 0.92381 0.95828 0.85489 0.85513 0.73101 0.83115 0.82838 0.83731 0.84984 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 8.77 71.98 0.63 -3.85 16 2 C -0.08 -3.07 2.54 -10.79 -0.03 -3.10 16 3 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 4 C 0.03 1.63 4.45 29.85 0.13 1.77 16 5 C -0.53 -30.12 8.41 25.60 0.22 -29.91 16 6 H 0.06 3.48 7.06 -2.91 -0.02 3.46 16 7 C -0.01 -0.33 5.46 84.66 0.46 0.13 16 8 N -0.94 -58.26 13.29 21.45 0.28 -57.98 16 9 Si 0.96 44.75 29.54 68.60 2.03 46.78 16 10 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 13 C 0.08 2.69 5.14 86.30 0.44 3.14 16 14 N -0.68 -18.39 6.50 -513.89 -3.34 -21.73 16 15 C 0.07 1.83 4.97 86.30 0.43 2.26 16 16 C -0.12 -1.92 5.96 29.85 0.18 -1.74 16 17 C 0.51 10.44 7.67 87.66 0.67 11.11 16 18 O -0.57 -16.96 13.42 -3.06 -0.04 -17.00 16 19 N -0.66 -9.66 5.34 -303.50 -1.62 -11.28 16 20 C 0.13 2.27 6.30 38.15 0.24 2.51 16 21 C -0.15 -1.90 9.97 22.39 0.22 -1.67 16 22 C -0.10 -1.21 10.04 22.25 0.22 -0.99 16 23 C -0.14 -1.89 10.04 22.29 0.22 -1.66 16 24 C -0.12 -2.07 10.04 22.25 0.22 -1.85 16 25 C -0.15 -3.30 8.70 22.39 0.19 -3.11 16 26 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 27 H 0.05 1.82 6.95 -2.39 -0.02 1.81 16 28 H 0.07 1.97 6.68 -2.39 -0.02 1.96 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 31 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.35 7.94 6.98 -89.69 -0.63 7.31 16 35 H 0.06 1.69 8.10 -2.39 -0.02 1.67 16 36 H 0.02 0.64 8.10 -2.38 -0.02 0.62 16 37 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.13 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.43 2.76 8.82 -92.71 -0.82 1.95 16 40 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 41 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 42 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 43 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 44 H 0.11 3.02 6.23 -2.91 -0.02 3.00 16 Total: -1.00 -75.09 362.46 1.32 -73.76 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -0.45 Total: 14.42 kcal Atomic # 6 Polarization: -31.43 SS G_CDS: 4.47 Total: -26.96 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -4.67 Total: -90.99 kcal Atomic # 8 Polarization: -16.96 SS G_CDS: -0.04 Total: -17.00 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -75.09 1.32 -73.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602545721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.917 kcal (2) G-P(sol) polarization free energy of solvation -75.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.63 seconds