Wall clock time and date at job start Tue Mar 31 2020 08:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.46964 * 209.99990 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00150 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.46973 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.47169 * 304.99407 * 17 16 14 19 19 N 1.46899 * 109.47625 * 65.00072 * 17 16 14 20 20 C 1.53009 * 109.47067 * 184.99978 * 17 16 14 21 21 C 1.50702 * 109.46886 * 174.99720 * 20 17 16 22 22 C 1.38229 * 120.00234 * 269.72583 * 21 20 17 23 23 C 1.38233 * 120.00371 * 179.76612 * 22 21 20 24 24 C 1.38243 * 119.99843 * 0.51336 * 23 22 21 25 25 C 1.38237 * 119.99727 * 359.73957 * 24 23 22 26 26 C 1.38236 * 119.99693 * 90.00231 * 21 20 17 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 32 32 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 33 33 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 34 34 H 1.09002 * 109.47152 * 300.00044 * 16 14 12 35 35 H 1.09000 * 109.47333 * 60.00571 * 16 14 12 36 36 H 1.00902 * 110.99685 * 296.05047 * 19 17 16 37 37 H 1.00906 * 110.99759 * 59.99886 * 19 17 16 38 38 H 1.08992 * 109.46873 * 295.00065 * 20 17 16 39 39 H 1.09001 * 109.46896 * 55.00053 * 20 17 16 40 40 H 1.08006 * 120.00178 * 0.02562 * 22 21 20 41 41 H 1.07997 * 120.00837 * 180.23279 * 23 22 21 42 42 H 1.07998 * 120.00143 * 179.72429 * 24 23 22 43 43 H 1.08000 * 120.00373 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00391 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 6 4.1455 0.2158 -4.1466 18 1 3.5679 1.1133 -4.3679 19 7 5.3507 0.5830 -3.3913 20 6 4.5516 -0.4649 -5.4554 21 6 5.2842 0.5213 -6.3282 22 6 4.5830 1.3023 -7.2277 23 6 5.2544 2.2103 -8.0249 24 6 6.6284 2.3298 -7.9302 25 6 7.3302 1.5450 -7.0344 26 6 6.6581 0.6407 -6.2334 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 0.7376 -2.1442 -1.9994 32 1 2.4629 -2.5818 -1.9864 33 1 1.5295 -2.5968 -0.4710 34 1 3.9004 -1.6023 -3.0178 35 1 2.4470 -1.0878 -3.9074 36 1 5.1113 1.0915 -2.5533 37 1 5.9036 -0.2326 -3.1738 38 1 5.2028 -1.3114 -5.2377 39 1 3.6596 -0.8165 -5.9739 40 1 3.5100 1.2062 -7.3046 41 1 4.7062 2.8233 -8.7250 42 1 7.1535 3.0360 -8.5562 43 1 8.4037 1.6379 -6.9606 44 1 7.2064 0.0276 -5.5335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602594418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:22 Heat of formation + Delta-G solvation = -23.123899 kcal Electronic energy + Delta-G solvation = -22958.205703 eV Core-core repulsion = 19681.765677 eV Total energy + Delta-G solvation = -3276.440026 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.63652 -39.01936 -36.24961 -35.09805 -32.92530 -31.76944 -30.83493 -30.00232 -28.52095 -26.80292 -26.06324 -25.25086 -22.56068 -22.34011 -20.97472 -20.22528 -18.30978 -16.95339 -16.55567 -16.28871 -15.86125 -15.43052 -15.03116 -14.95246 -14.74489 -14.27799 -13.81319 -13.53773 -13.35338 -12.85832 -12.83504 -12.60383 -12.46678 -12.25900 -11.85541 -11.70748 -11.56523 -11.50923 -11.09250 -11.00635 -10.94763 -10.89456 -10.79201 -10.71141 -10.27692 -10.21016 -9.23675 -9.00988 -8.86248 -8.61634 -8.46965 -8.36090 -7.63826 -6.11218 -4.19710 1.42049 1.47938 3.23807 3.28794 3.31058 3.34354 3.78736 3.96513 4.36018 4.66156 4.80627 4.96935 4.99780 5.02278 5.11783 5.20006 5.25396 5.37309 5.41490 5.53777 5.59330 5.66678 5.71480 5.78554 5.82248 5.98228 6.08193 6.11218 6.26795 6.31317 6.50896 6.55260 6.71461 6.72724 6.79476 7.02801 7.06845 7.36326 7.45366 7.50695 7.67194 7.81642 7.97447 8.16053 8.48903 8.78595 9.00767 9.47051 10.94049 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.003049 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.400211 B = 9181.538096 C = 9386.749786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.084 3.916 14 C 0.501 3.499 15 O -0.553 6.553 16 C -0.178 4.178 17 C 0.116 3.884 18 H 0.086 0.914 19 N -0.839 5.839 20 C -0.076 4.076 21 C -0.060 4.060 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.124 4.124 26 C -0.092 4.092 27 H 0.093 0.907 28 H 0.029 0.971 29 H 0.010 0.990 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.360 0.640 37 H 0.327 0.673 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.765 -4.371 -17.987 19.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.322 5.322 13 C -0.061 4.061 14 C 0.288 3.712 15 O -0.433 6.433 16 C -0.221 4.221 17 C 0.003 3.997 18 H 0.105 0.895 19 N -0.371 5.371 20 C -0.114 4.114 21 C -0.060 4.060 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.110 4.110 27 H 0.112 0.888 28 H 0.048 0.952 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.178 0.822 37 H 0.138 0.862 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.135 0.865 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.994 -3.207 -18.336 19.885 hybrid contribution -0.257 -1.209 1.719 2.117 sum 6.737 -4.415 -16.617 18.467 Atomic orbital electron populations 1.22080 0.98253 0.99343 1.00779 1.18934 0.90863 0.94528 0.79980 0.91908 1.21300 1.31928 1.13040 0.90344 0.92351 1.24897 0.94891 0.94980 0.98984 1.69877 1.36215 1.22564 1.23808 0.86495 0.78693 0.79813 0.82380 1.20569 1.21081 1.19960 1.48276 1.48860 1.11576 1.23537 1.21595 0.98737 0.83385 1.02341 1.20423 0.79273 0.87158 0.84345 1.90612 1.58644 1.17076 1.76957 1.22639 1.01987 1.00608 0.96818 1.21119 0.90481 0.96786 0.91270 0.89542 1.58974 1.20144 1.27752 1.30247 1.20712 0.99729 0.96437 0.94500 1.19675 0.93823 0.97152 0.95388 1.21034 0.99608 0.96701 0.96612 1.21056 0.94562 0.98770 0.99787 1.21065 0.94446 0.99875 0.99491 1.21114 0.99658 0.96758 0.96668 1.20951 0.93858 0.98414 0.97780 0.88845 0.95220 0.97081 0.92635 0.93916 0.92876 0.90125 0.89602 0.89317 0.82200 0.86171 0.91108 0.90771 0.86463 0.86565 0.86694 0.86555 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.97 37.16 0.33 -3.16 16 2 C 0.26 6.49 2.64 -69.08 -0.18 6.31 16 3 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 4 C -0.53 -14.08 7.99 -34.44 -0.28 -14.35 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.99 11.32 55.43 0.63 -24.36 16 8 Si 0.90 20.85 29.54 -169.99 -5.02 15.83 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.59 -12.22 2.75 -175.27 -0.48 -12.70 16 13 C 0.08 1.35 9.24 59.85 0.55 1.91 16 14 C 0.50 9.77 7.48 -10.99 -0.08 9.69 16 15 O -0.55 -12.83 13.47 5.56 0.07 -12.76 16 16 C -0.18 -2.43 3.90 -27.89 -0.11 -2.54 16 17 C 0.12 1.55 2.42 -67.71 -0.16 1.38 16 18 H 0.09 1.37 7.95 -51.93 -0.41 0.96 16 19 N -0.84 -11.89 8.58 -4.66 -0.04 -11.93 16 20 C -0.08 -0.80 5.00 -27.88 -0.14 -0.94 16 21 C -0.06 -0.70 4.95 -104.63 -0.52 -1.22 16 22 C -0.12 -1.38 9.70 -39.59 -0.38 -1.76 16 23 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 24 C -0.13 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.12 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.09 -1.05 9.31 -39.58 -0.37 -1.42 16 27 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 28 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.69 6.44 -51.93 -0.33 0.35 16 33 H 0.08 1.41 7.02 -51.93 -0.36 1.05 16 34 H 0.09 1.03 7.40 -51.93 -0.38 0.65 16 35 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.36 6.21 6.89 -39.29 -0.27 5.94 16 37 H 0.33 4.02 9.00 -39.29 -0.35 3.67 16 38 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 39 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 40 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 41 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 42 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -30.50 355.85 -9.03 -39.54 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -6.93 Total: 10.67 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: -2.62 Total: -9.65 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.10 Total: -49.00 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.07 Total: -12.76 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.50 -9.03 -39.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.413 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds