Wall clock time and date at job start Tue Mar 31 2020 08:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.46964 * 209.99990 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 13 13 C 1.46499 * 119.99936 * 299.99999 * 12 2 1 14 14 C 1.34777 * 120.00000 * 119.99453 * 12 2 1 15 15 O 1.21274 * 120.00150 * 0.02562 * 14 12 2 16 16 C 1.50696 * 119.99735 * 180.02562 * 14 12 2 17 17 C 1.52998 * 109.46973 * 180.02562 * 16 14 12 18 18 H 1.09000 * 109.47169 * 304.99407 * 17 16 14 19 19 N 1.46899 * 109.47625 * 65.00072 * 17 16 14 20 20 C 1.53009 * 109.47067 * 184.99978 * 17 16 14 21 21 C 1.50702 * 109.46886 * 174.99720 * 20 17 16 22 22 C 1.38229 * 120.00234 * 269.72583 * 21 20 17 23 23 C 1.38233 * 120.00371 * 179.76612 * 22 21 20 24 24 C 1.38243 * 119.99843 * 0.51336 * 23 22 21 25 25 C 1.38237 * 119.99727 * 359.73957 * 24 23 22 26 26 C 1.38236 * 119.99693 * 90.00231 * 21 20 17 27 27 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 30 30 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 31 31 H 1.09000 * 109.46842 * 89.99634 * 13 12 2 32 32 H 1.08994 * 109.47173 * 210.00167 * 13 12 2 33 33 H 1.08998 * 109.46730 * 330.00200 * 13 12 2 34 34 H 1.09002 * 109.47152 * 300.00044 * 16 14 12 35 35 H 1.09000 * 109.47333 * 60.00571 * 16 14 12 36 36 H 1.00902 * 110.99685 * 296.05047 * 19 17 16 37 37 H 1.00906 * 110.99759 * 59.99886 * 19 17 16 38 38 H 1.08992 * 109.46873 * 295.00065 * 20 17 16 39 39 H 1.09001 * 109.46896 * 55.00053 * 20 17 16 40 40 H 1.08006 * 120.00178 * 0.02562 * 22 21 20 41 41 H 1.07997 * 120.00837 * 180.23279 * 23 22 21 42 42 H 1.07998 * 120.00143 * 179.72429 * 24 23 22 43 43 H 1.08000 * 120.00373 * 179.97438 * 25 24 23 44 44 H 1.07995 * 120.00391 * 359.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7931 -0.0355 -2.0834 15 8 3.0864 1.1255 -1.8913 16 6 3.2950 -0.7457 -3.3141 17 6 4.1455 0.2158 -4.1466 18 1 3.5679 1.1133 -4.3679 19 7 5.3507 0.5830 -3.3913 20 6 4.5516 -0.4649 -5.4554 21 6 5.2842 0.5213 -6.3282 22 6 4.5830 1.3023 -7.2277 23 6 5.2544 2.2103 -8.0249 24 6 6.6284 2.3298 -7.9302 25 6 7.3302 1.5450 -7.0344 26 6 6.6581 0.6407 -6.2334 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 0.7096 1.1617 3.4844 31 1 0.7376 -2.1442 -1.9994 32 1 2.4629 -2.5818 -1.9864 33 1 1.5295 -2.5968 -0.4710 34 1 3.9004 -1.6023 -3.0178 35 1 2.4470 -1.0878 -3.9074 36 1 5.1113 1.0915 -2.5533 37 1 5.9036 -0.2326 -3.1738 38 1 5.2028 -1.3114 -5.2377 39 1 3.6596 -0.8165 -5.9739 40 1 3.5100 1.2062 -7.3046 41 1 4.7062 2.8233 -8.7250 42 1 7.1535 3.0360 -8.5562 43 1 8.4037 1.6379 -6.9606 44 1 7.2064 0.0276 -5.5335 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602594418.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:20 Heat of formation + Delta-G solvation = -41.720161 kcal Electronic energy + Delta-G solvation = -22959.012098 eV Core-core repulsion = 19681.765677 eV Total energy + Delta-G solvation = -3277.246420 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.97875 -40.00932 -37.59796 -36.57358 -34.81981 -32.70155 -31.75116 -31.59492 -29.79779 -27.82053 -27.47003 -27.29434 -23.70857 -23.30079 -22.31193 -21.30190 -19.84478 -18.54974 -17.97928 -17.51891 -17.18257 -16.79801 -16.39943 -16.18395 -15.76773 -15.63772 -15.04771 -14.67680 -14.53339 -14.14374 -14.08752 -13.97468 -13.63021 -13.53792 -13.26675 -13.01658 -12.95348 -12.81350 -12.69683 -12.64774 -12.51905 -12.20272 -12.10742 -11.98508 -11.73606 -11.66292 -11.20738 -10.65701 -10.46148 -9.69636 -9.53342 -9.40233 -9.29480 -8.16193 -6.33047 0.60016 0.66134 1.40015 1.41248 1.50973 1.83102 2.31768 2.50727 3.02359 3.11921 3.67075 3.74125 3.89654 4.13009 4.22270 4.27766 4.31473 4.40595 4.47322 4.56869 4.63322 4.73240 4.74764 4.76538 4.79615 4.86022 4.88443 4.99228 5.03717 5.06737 5.19678 5.31945 5.33797 5.46330 5.59038 5.66203 5.70673 5.74983 5.89327 6.02643 6.15178 6.27003 6.33298 6.68157 6.75783 6.86434 7.32279 7.50778 8.88066 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.030023 B = 0.003049 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.400211 B = 9181.538096 C = 9386.749786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.007 0.993 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.282 1.282 10 H -0.281 1.281 11 H -0.260 1.260 12 N -0.602 5.602 13 C 0.079 3.921 14 C 0.490 3.510 15 O -0.600 6.600 16 C -0.161 4.161 17 C 0.121 3.879 18 H 0.055 0.945 19 N -0.842 5.842 20 C -0.066 4.066 21 C -0.076 4.076 22 C -0.137 4.137 23 C -0.135 4.135 24 C -0.139 4.139 25 C -0.136 4.136 26 C -0.106 4.106 27 H 0.065 0.935 28 H 0.046 0.954 29 H 0.017 0.983 30 H 0.264 0.736 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.065 0.935 34 H 0.113 0.887 35 H 0.119 0.881 36 H 0.341 0.659 37 H 0.338 0.662 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.134 0.866 43 H 0.132 0.868 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.398 -6.800 -19.319 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.159 3.841 3 H 0.025 0.975 4 C -0.576 4.576 5 H 0.080 0.920 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.208 1.208 10 H -0.207 1.207 11 H -0.185 1.185 12 N -0.332 5.332 13 C -0.063 4.063 14 C 0.279 3.721 15 O -0.483 6.483 16 C -0.202 4.202 17 C 0.008 3.992 18 H 0.073 0.927 19 N -0.373 5.373 20 C -0.103 4.103 21 C -0.076 4.076 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.154 4.154 26 C -0.124 4.124 27 H 0.084 0.916 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.151 0.849 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.145 0.855 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.150 0.850 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 7.632 -5.690 -19.710 21.889 hybrid contribution -0.431 -0.379 2.074 2.152 sum 7.201 -6.068 -17.636 19.993 Atomic orbital electron populations 1.21869 0.97472 0.99974 0.99759 1.18479 0.91405 0.92210 0.81986 0.97471 1.21580 1.31808 1.13043 0.91153 0.92026 1.25752 0.95069 0.95650 1.02102 1.70027 1.37350 1.23971 1.24402 0.85464 0.77768 0.79254 0.78585 1.20817 1.20691 1.18452 1.48281 1.49162 1.13354 1.22403 1.21842 1.01322 0.80638 1.02485 1.21500 0.78211 0.86862 0.85489 1.90596 1.60029 1.19521 1.78154 1.22608 1.03227 1.00519 0.93888 1.21073 0.89795 0.95847 0.92479 0.92660 1.58949 1.20843 1.28328 1.29171 1.20657 1.00816 0.96280 0.92582 1.19878 0.94126 0.97743 0.95864 1.21297 1.00317 0.96991 0.96905 1.21367 0.95010 0.98867 1.00043 1.21385 0.94644 1.00085 0.99607 1.21413 1.00703 0.96646 0.96600 1.21156 0.94123 0.98899 0.98206 0.91587 0.93541 0.96343 0.92684 0.91785 0.88883 0.91641 0.86867 0.86325 0.84415 0.84898 0.89362 0.88830 0.85537 0.84888 0.84766 0.84977 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.41 8.97 71.98 0.65 -5.76 16 2 C 0.26 13.51 2.64 44.24 0.12 13.63 16 3 H 0.01 0.46 6.90 -2.39 -0.02 0.44 16 4 C -0.54 -28.93 7.99 25.60 0.20 -28.73 16 5 H 0.06 3.20 7.33 -2.91 -0.02 3.18 16 6 C 0.01 0.75 5.30 84.66 0.45 1.20 16 7 N -0.92 -53.20 11.32 21.45 0.24 -52.96 16 8 Si 0.96 42.80 29.54 68.60 2.03 44.82 16 9 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 10 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 11 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 12 N -0.60 -24.42 2.75 -826.82 -2.28 -26.69 16 13 C 0.08 2.34 9.24 127.77 1.18 3.52 16 14 C 0.49 18.87 7.48 87.66 0.66 19.53 16 15 O -0.60 -28.92 13.47 -3.01 -0.04 -28.96 16 16 C -0.16 -3.92 3.90 29.85 0.12 -3.80 16 17 C 0.12 3.04 2.42 44.92 0.11 3.15 16 18 H 0.06 1.75 7.95 -2.39 -0.02 1.73 16 19 N -0.84 -23.41 8.58 -168.67 -1.45 -24.86 16 20 C -0.07 -1.21 5.00 29.85 0.15 -1.06 16 21 C -0.08 -1.66 4.95 -19.87 -0.10 -1.75 16 22 C -0.14 -2.94 9.70 22.27 0.22 -2.73 16 23 C -0.13 -2.72 10.05 22.27 0.22 -2.49 16 24 C -0.14 -2.72 10.05 22.27 0.22 -2.50 16 25 C -0.14 -2.75 10.05 22.27 0.22 -2.53 16 26 C -0.11 -2.28 9.31 22.27 0.21 -2.08 16 27 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 28 H 0.05 2.03 7.67 -2.39 -0.02 2.01 16 29 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.61 16 32 H 0.09 1.98 6.44 -2.39 -0.02 1.97 16 33 H 0.06 2.14 7.02 -2.39 -0.02 2.13 16 34 H 0.11 2.21 7.40 -2.39 -0.02 2.19 16 35 H 0.12 2.25 8.11 -2.39 -0.02 2.24 16 36 H 0.34 12.05 6.89 -89.69 -0.62 11.44 16 37 H 0.34 7.82 9.00 -89.69 -0.81 7.01 16 38 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 39 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 40 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 41 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 42 H 0.13 1.99 8.06 -2.91 -0.02 1.96 16 43 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 Total: -1.00 -69.71 355.85 2.70 -67.01 By element: Atomic # 1 Polarization: 34.44 SS G_CDS: -0.43 Total: 34.02 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 4.62 Total: -12.39 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -3.48 Total: -104.51 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.04 Total: -28.96 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -69.71 2.70 -67.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594418.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.294 kcal (2) G-P(sol) polarization free energy of solvation -69.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds