Wall clock time and date at job start Tue Mar 31 2020 08:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46840 * 2 1 4 4 C 1.50699 * 109.46956 * 240.00144 * 2 1 3 5 5 H 1.07997 * 119.99542 * 245.35129 * 4 2 1 6 6 C 1.37873 * 120.00149 * 65.35830 * 4 2 1 7 7 N 1.31513 * 119.99945 * 5.15122 * 6 4 2 8 8 Si 1.86804 * 119.99910 * 185.15151 * 6 4 2 9 9 H 1.48500 * 109.47164 * 84.99518 * 8 6 4 10 10 H 1.48496 * 109.47169 * 204.99936 * 8 6 4 11 11 H 1.48498 * 109.47038 * 324.99819 * 8 6 4 12 12 N 1.46500 * 109.46773 * 119.99644 * 2 1 3 13 13 C 1.46492 * 119.99956 * 60.00742 * 12 2 1 14 14 C 1.34776 * 119.99725 * 239.99564 * 12 2 1 15 15 O 1.21281 * 120.00347 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99873 * 180.02562 * 14 12 2 17 17 C 1.52991 * 109.47554 * 180.02562 * 16 14 12 18 18 H 1.09004 * 109.47335 * 55.00107 * 17 16 14 19 19 N 1.46899 * 109.47079 * 295.00487 * 17 16 14 20 20 C 1.52995 * 109.47587 * 175.00485 * 17 16 14 21 21 C 1.50697 * 109.47277 * 185.00278 * 20 17 16 22 22 C 1.38238 * 119.99872 * 269.72079 * 21 20 17 23 23 C 1.38240 * 119.99818 * 179.76506 * 22 21 20 24 24 C 1.38231 * 120.00027 * 0.50954 * 23 22 21 25 25 C 1.38237 * 120.00321 * 359.74913 * 24 23 22 26 26 C 1.38237 * 119.99751 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46614 * 54.89641 * 1 2 3 28 28 H 1.09000 * 109.46775 * 174.88843 * 1 2 3 29 29 H 1.08994 * 109.46964 * 294.89239 * 1 2 3 30 30 H 0.97002 * 119.99743 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.47450 * 89.99525 * 13 12 2 32 32 H 1.09000 * 109.47030 * 209.99811 * 13 12 2 33 33 H 1.09001 * 109.47202 * 329.99389 * 13 12 2 34 34 H 1.09000 * 109.47361 * 300.01135 * 16 14 12 35 35 H 1.09001 * 109.46794 * 60.00358 * 16 14 12 36 36 H 1.00903 * 111.00206 * 299.99552 * 19 17 16 37 37 H 1.00897 * 111.00365 * 63.95454 * 19 17 16 38 38 H 1.09003 * 109.47156 * 304.99631 * 20 17 16 39 39 H 1.08994 * 109.47687 * 64.99655 * 20 17 16 40 40 H 1.08002 * 120.00070 * 0.02562 * 22 21 20 41 41 H 1.07998 * 119.99575 * 180.23064 * 23 22 21 42 42 H 1.07997 * 119.99989 * 179.71736 * 24 23 22 43 43 H 1.08001 * 120.00486 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00080 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5801 -1.6361 -1.1337 6 6 1.7928 -0.1784 -2.4797 7 7 1.2158 0.9978 -2.5939 8 14 2.2878 -1.1285 -4.0100 9 1 1.2110 -2.0865 -4.3678 10 1 2.5010 -0.1811 -5.1335 11 1 3.5449 -1.8733 -3.7452 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0860 1.1257 1.8915 16 6 3.2960 -0.7460 3.3136 17 6 4.1454 0.2158 4.1467 18 1 3.5668 1.1125 4.3687 19 7 5.3501 0.5850 3.3915 20 6 4.5524 -0.4654 5.4548 21 6 5.2838 0.5209 6.3284 22 6 6.6583 0.6380 6.2376 23 6 7.3288 1.5462 7.0355 24 6 6.6260 2.3298 7.9316 25 6 5.2522 2.2090 8.0262 26 6 4.5811 1.3049 7.2243 27 1 -0.3632 0.5910 -0.8408 28 1 -0.3633 -1.0236 -0.0916 29 1 -0.3633 0.4325 0.9321 30 1 1.0469 1.3719 -3.4728 31 1 2.4159 -2.7376 0.9717 32 1 1.6238 -2.2851 2.5002 33 1 0.6905 -2.3002 0.9847 34 1 2.4484 -1.0890 3.9069 35 1 3.9017 -1.6021 3.0166 36 1 5.9039 -0.2298 3.1733 37 1 5.1101 1.0939 2.5540 38 1 3.6609 -0.8184 5.9733 39 1 5.2045 -1.3110 5.2366 40 1 7.2078 0.0229 5.5404 41 1 8.4021 1.6402 6.9620 42 1 7.1504 3.0361 8.5582 43 1 4.7032 2.8209 8.7266 44 1 3.5078 1.2102 7.2984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602594422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:35 Heat of formation + Delta-G solvation = -23.751407 kcal Electronic energy + Delta-G solvation = -22958.285440 eV Core-core repulsion = 19681.818203 eV Total energy + Delta-G solvation = -3276.467237 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.63156 -39.01536 -36.24690 -35.08931 -32.88237 -31.76389 -30.83194 -30.05900 -28.53988 -26.80196 -26.11400 -25.20601 -22.56104 -22.34218 -20.98258 -20.21897 -18.30210 -16.94618 -16.55855 -16.25537 -15.89815 -15.41704 -15.01099 -14.95955 -14.73508 -14.27590 -13.81607 -13.53371 -13.34980 -12.89452 -12.75921 -12.59739 -12.55090 -12.28724 -11.86268 -11.71116 -11.61503 -11.47203 -11.06513 -11.01461 -10.96968 -10.86942 -10.80642 -10.76157 -10.30220 -10.22232 -9.23793 -8.98722 -8.85868 -8.61133 -8.46089 -8.35035 -7.64593 -6.11259 -4.17732 1.42426 1.48243 3.24072 3.29522 3.31881 3.35341 3.79002 3.96620 4.37202 4.66741 4.80768 4.97287 4.99685 5.02618 5.12136 5.21318 5.25803 5.38915 5.41979 5.52862 5.57492 5.68317 5.70727 5.76925 5.83294 5.99983 6.08481 6.11578 6.23040 6.27290 6.51205 6.55618 6.67661 6.70997 6.73061 6.96524 7.07175 7.32581 7.45640 7.51270 7.66173 7.82644 7.90386 8.13753 8.48991 8.81281 9.01487 9.48433 10.96032 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.003058 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.111342 B = 9153.356775 C = 9348.861842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.256 3.744 3 H 0.069 0.931 4 C -0.529 4.529 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.897 3.103 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.086 3.914 14 C 0.501 3.499 15 O -0.552 6.552 16 C -0.178 4.178 17 C 0.116 3.884 18 H 0.086 0.914 19 N -0.839 5.839 20 C -0.076 4.076 21 C -0.060 4.060 22 C -0.092 4.092 23 C -0.124 4.124 24 C -0.131 4.131 25 C -0.124 4.124 26 C -0.122 4.122 27 H 0.078 0.922 28 H 0.033 0.967 29 H 0.014 0.986 30 H 0.264 0.736 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.327 0.673 37 H 0.361 0.639 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.116 0.884 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -4.593 18.212 19.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.156 3.844 3 H 0.087 0.913 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.323 5.323 13 C -0.058 4.058 14 C 0.288 3.712 15 O -0.431 6.431 16 C -0.221 4.221 17 C 0.003 3.997 18 H 0.105 0.895 19 N -0.371 5.371 20 C -0.114 4.114 21 C -0.060 4.060 22 C -0.110 4.110 23 C -0.142 4.142 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.140 4.140 27 H 0.097 0.903 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.074 0.926 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.138 0.862 37 H 0.178 0.822 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.138 0.862 41 H 0.134 0.866 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 6.385 -3.405 18.564 19.925 hybrid contribution -0.313 -1.264 -1.787 2.211 sum 6.072 -4.669 16.777 18.443 Atomic orbital electron populations 1.22031 0.98607 0.99799 0.99556 1.18948 0.90478 0.94949 0.80069 0.91340 1.21262 1.36371 1.08632 0.90462 0.92403 1.24904 0.95071 0.94716 0.98984 1.69938 1.42477 1.15856 1.24073 0.86541 0.78876 0.79681 0.82476 1.20521 1.21122 1.20016 1.48261 1.48918 1.11555 1.23581 1.21556 1.01528 0.83345 0.99353 1.20415 0.79225 0.87146 0.84392 1.90619 1.58503 1.17038 1.76984 1.22640 1.01900 1.00654 0.96857 1.21114 0.90517 0.96756 0.91268 0.89544 1.58969 1.20093 1.27767 1.30297 1.20709 0.99730 0.96441 0.94495 1.19678 0.93811 0.97122 0.95412 1.20954 0.93869 0.98395 0.97806 1.21110 0.99664 0.96715 0.96688 1.21061 0.94449 0.99893 0.99478 1.21055 0.94563 0.98813 0.99747 1.21034 0.99597 0.96727 0.96597 0.90333 0.94823 0.96690 0.92639 0.93378 0.92933 0.90961 0.89296 0.89632 0.86162 0.82177 0.90789 0.91100 0.86239 0.86555 0.86697 0.86568 0.86467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.84 37.16 0.33 -2.98 16 2 C 0.26 6.43 2.51 -69.08 -0.17 6.26 16 3 H 0.07 2.02 6.88 -51.93 -0.36 1.67 16 4 C -0.53 -14.17 8.34 -34.44 -0.29 -14.46 16 5 H 0.06 1.53 7.52 -52.49 -0.39 1.13 16 6 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 7 N -0.89 -25.26 11.99 55.43 0.66 -24.60 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.93 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 12 N -0.59 -12.19 2.75 -175.26 -0.48 -12.67 16 13 C 0.09 1.38 9.43 59.84 0.56 1.95 16 14 C 0.50 9.77 7.48 -10.99 -0.08 9.69 16 15 O -0.55 -12.85 13.47 5.56 0.07 -12.77 16 16 C -0.18 -2.42 3.90 -27.89 -0.11 -2.53 16 17 C 0.12 1.55 2.42 -67.72 -0.16 1.39 16 18 H 0.09 1.37 7.96 -51.93 -0.41 0.95 16 19 N -0.84 -11.98 8.59 -4.67 -0.04 -12.02 16 20 C -0.08 -0.80 5.00 -27.89 -0.14 -0.94 16 21 C -0.06 -0.70 4.95 -104.62 -0.52 -1.22 16 22 C -0.09 -1.06 9.32 -39.58 -0.37 -1.43 16 23 C -0.12 -1.34 10.05 -39.58 -0.40 -1.73 16 24 C -0.13 -1.37 10.05 -39.58 -0.40 -1.77 16 25 C -0.12 -1.32 10.05 -39.58 -0.40 -1.72 16 26 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 27 H 0.08 2.01 6.84 -51.93 -0.36 1.66 16 28 H 0.03 0.72 6.88 -51.93 -0.36 0.37 16 29 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 31 H 0.05 0.75 8.09 -51.93 -0.42 0.33 16 32 H 0.05 0.65 6.44 -51.93 -0.33 0.31 16 33 H 0.07 1.18 6.53 -51.93 -0.34 0.84 16 34 H 0.09 1.03 7.40 -51.93 -0.38 0.64 16 35 H 0.09 1.04 8.11 -51.93 -0.42 0.62 16 36 H 0.33 4.07 9.00 -39.29 -0.35 3.71 16 37 H 0.36 6.27 6.89 -39.29 -0.27 6.00 16 38 H 0.07 0.67 8.09 -51.93 -0.42 0.25 16 39 H 0.07 0.67 8.08 -51.93 -0.42 0.25 16 40 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 41 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 42 H 0.11 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -30.85 356.42 -8.97 -39.81 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -6.91 Total: 10.48 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -2.62 Total: -9.53 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: 0.14 Total: -49.29 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.07 Total: -12.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.85 -8.97 -39.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.062 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds