Wall clock time and date at job start Tue Mar 31 2020 08:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.46840 * 2 1 4 4 C 1.50699 * 109.46956 * 240.00144 * 2 1 3 5 5 H 1.07997 * 119.99542 * 245.35129 * 4 2 1 6 6 C 1.37873 * 120.00149 * 65.35830 * 4 2 1 7 7 N 1.31513 * 119.99945 * 5.15122 * 6 4 2 8 8 Si 1.86804 * 119.99910 * 185.15151 * 6 4 2 9 9 H 1.48500 * 109.47164 * 84.99518 * 8 6 4 10 10 H 1.48496 * 109.47169 * 204.99936 * 8 6 4 11 11 H 1.48498 * 109.47038 * 324.99819 * 8 6 4 12 12 N 1.46500 * 109.46773 * 119.99644 * 2 1 3 13 13 C 1.46492 * 119.99956 * 60.00742 * 12 2 1 14 14 C 1.34776 * 119.99725 * 239.99564 * 12 2 1 15 15 O 1.21281 * 120.00347 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99873 * 180.02562 * 14 12 2 17 17 C 1.52991 * 109.47554 * 180.02562 * 16 14 12 18 18 H 1.09004 * 109.47335 * 55.00107 * 17 16 14 19 19 N 1.46899 * 109.47079 * 295.00487 * 17 16 14 20 20 C 1.52995 * 109.47587 * 175.00485 * 17 16 14 21 21 C 1.50697 * 109.47277 * 185.00278 * 20 17 16 22 22 C 1.38238 * 119.99872 * 269.72079 * 21 20 17 23 23 C 1.38240 * 119.99818 * 179.76506 * 22 21 20 24 24 C 1.38231 * 120.00027 * 0.50954 * 23 22 21 25 25 C 1.38237 * 120.00321 * 359.74913 * 24 23 22 26 26 C 1.38237 * 119.99751 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46614 * 54.89641 * 1 2 3 28 28 H 1.09000 * 109.46775 * 174.88843 * 1 2 3 29 29 H 1.08994 * 109.46964 * 294.89239 * 1 2 3 30 30 H 0.97002 * 119.99743 * 180.02562 * 7 6 4 31 31 H 1.09005 * 109.47450 * 89.99525 * 13 12 2 32 32 H 1.09000 * 109.47030 * 209.99811 * 13 12 2 33 33 H 1.09001 * 109.47202 * 329.99389 * 13 12 2 34 34 H 1.09000 * 109.47361 * 300.01135 * 16 14 12 35 35 H 1.09001 * 109.46794 * 60.00358 * 16 14 12 36 36 H 1.00903 * 111.00206 * 299.99552 * 19 17 16 37 37 H 1.00897 * 111.00365 * 63.95454 * 19 17 16 38 38 H 1.09003 * 109.47156 * 304.99631 * 20 17 16 39 39 H 1.08994 * 109.47687 * 64.99655 * 20 17 16 40 40 H 1.08002 * 120.00070 * 0.02562 * 22 21 20 41 41 H 1.07998 * 119.99575 * 180.23064 * 23 22 21 42 42 H 1.07997 * 119.99989 * 179.71736 * 24 23 22 43 43 H 1.08001 * 120.00486 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00080 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.5801 -1.6361 -1.1337 6 6 1.7928 -0.1784 -2.4797 7 7 1.2158 0.9978 -2.5939 8 14 2.2878 -1.1285 -4.0100 9 1 1.2110 -2.0865 -4.3678 10 1 2.5010 -0.1811 -5.1335 11 1 3.5449 -1.8733 -3.7452 12 7 2.0183 -0.6906 1.1962 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0860 1.1257 1.8915 16 6 3.2960 -0.7460 3.3136 17 6 4.1454 0.2158 4.1467 18 1 3.5668 1.1125 4.3687 19 7 5.3501 0.5850 3.3915 20 6 4.5524 -0.4654 5.4548 21 6 5.2838 0.5209 6.3284 22 6 6.6583 0.6380 6.2376 23 6 7.3288 1.5462 7.0355 24 6 6.6260 2.3298 7.9316 25 6 5.2522 2.2090 8.0262 26 6 4.5811 1.3049 7.2243 27 1 -0.3632 0.5910 -0.8408 28 1 -0.3633 -1.0236 -0.0916 29 1 -0.3633 0.4325 0.9321 30 1 1.0469 1.3719 -3.4728 31 1 2.4159 -2.7376 0.9717 32 1 1.6238 -2.2851 2.5002 33 1 0.6905 -2.3002 0.9847 34 1 2.4484 -1.0890 3.9069 35 1 3.9017 -1.6021 3.0166 36 1 5.9039 -0.2298 3.1733 37 1 5.1101 1.0939 2.5540 38 1 3.6609 -0.8184 5.9733 39 1 5.2045 -1.3110 5.2366 40 1 7.2078 0.0229 5.5404 41 1 8.4021 1.6402 6.9620 42 1 7.1504 3.0361 8.5582 43 1 4.7032 2.8209 8.7266 44 1 3.5078 1.2102 7.2984 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602594422.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:19:33 Heat of formation + Delta-G solvation = -42.765979 kcal Electronic energy + Delta-G solvation = -22959.109973 eV Core-core repulsion = 19681.818203 eV Total energy + Delta-G solvation = -3277.291771 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -40.97267 -40.00698 -37.59017 -36.56430 -34.78973 -32.70263 -31.80146 -31.60420 -29.80726 -27.81535 -27.52121 -27.23920 -23.71739 -23.30017 -22.31156 -21.29415 -19.83556 -18.55529 -17.95750 -17.52396 -17.17570 -16.80901 -16.36718 -16.20051 -15.77505 -15.64268 -15.04394 -14.65569 -14.54286 -14.15381 -14.10455 -14.03303 -13.60963 -13.55995 -13.31933 -12.95825 -12.91782 -12.86537 -12.69716 -12.59218 -12.53487 -12.26489 -12.10682 -11.99408 -11.73931 -11.66358 -11.20600 -10.62428 -10.47298 -9.69348 -9.52461 -9.39288 -9.31183 -8.17656 -6.32539 0.60196 0.66224 1.39705 1.40749 1.50149 1.83792 2.32345 2.50566 3.02465 3.11866 3.67468 3.74657 3.89149 4.12959 4.22460 4.29865 4.36340 4.38327 4.41871 4.58192 4.63612 4.67451 4.75644 4.77887 4.81537 4.83050 4.86911 4.98783 4.99956 5.05167 5.19681 5.32172 5.33841 5.46071 5.55491 5.67174 5.70781 5.75105 5.89389 5.98843 6.12351 6.27129 6.33513 6.67914 6.77026 6.86741 7.32915 7.51392 8.88723 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.029745 B = 0.003058 C = 0.002994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.111342 B = 9153.356775 C = 9348.861842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.260 3.740 3 H 0.012 0.988 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.288 1.288 11 H -0.269 1.269 12 N -0.602 5.602 13 C 0.082 3.918 14 C 0.490 3.510 15 O -0.600 6.600 16 C -0.161 4.161 17 C 0.121 3.879 18 H 0.056 0.944 19 N -0.842 5.842 20 C -0.066 4.066 21 C -0.076 4.076 22 C -0.106 4.106 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.135 4.135 26 C -0.137 4.137 27 H 0.049 0.951 28 H 0.051 0.949 29 H 0.025 0.975 30 H 0.264 0.736 31 H 0.054 0.946 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.338 0.662 37 H 0.341 0.659 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.133 0.867 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.542 -7.105 19.584 21.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.157 3.843 3 H 0.030 0.970 4 C -0.576 4.576 5 H 0.079 0.921 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.194 1.194 12 N -0.332 5.332 13 C -0.061 4.061 14 C 0.279 3.721 15 O -0.483 6.483 16 C -0.202 4.202 17 C 0.008 3.992 18 H 0.074 0.926 19 N -0.373 5.373 20 C -0.103 4.103 21 C -0.076 4.076 22 C -0.124 4.124 23 C -0.154 4.154 24 C -0.157 4.157 25 C -0.153 4.153 26 C -0.155 4.155 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.113 0.887 39 H 0.106 0.894 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.151 0.849 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.802 -5.973 19.977 21.933 hybrid contribution -0.409 -0.412 -2.152 2.229 sum 6.393 -6.386 17.826 19.985 Atomic orbital electron populations 1.21817 0.97486 1.00375 0.98880 1.18499 0.91278 0.92518 0.81985 0.97045 1.21563 1.36130 1.08627 0.91324 0.92081 1.25766 0.95129 0.95479 1.02196 1.70088 1.43760 1.17452 1.24647 0.85496 0.78911 0.78345 0.78432 1.19173 1.21367 1.19396 1.48272 1.49217 1.13355 1.22387 1.21822 1.01354 0.80433 1.02460 1.21503 0.78192 0.86826 0.85553 1.90603 1.59943 1.19529 1.78191 1.22608 1.03196 1.00499 0.93934 1.21076 0.89808 0.95859 0.92473 0.92596 1.58946 1.20852 1.28319 1.29200 1.20655 1.00848 0.96254 0.92568 1.19882 0.94099 0.97721 0.95895 1.21158 0.94156 0.98888 0.98233 1.21409 1.00701 0.96621 0.96638 1.21380 0.94662 1.00098 0.99590 1.21368 0.94998 0.98906 1.00004 1.21300 1.00329 0.96991 0.96863 0.93191 0.93006 0.95567 0.92737 0.92787 0.88385 0.91365 0.86074 0.87065 0.84943 0.84444 0.88742 0.89418 0.85680 0.85005 0.84773 0.84867 0.85486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.84 71.99 0.64 -5.38 16 2 C 0.26 13.36 2.51 44.25 0.11 13.47 16 3 H 0.01 0.72 6.88 -2.39 -0.02 0.71 16 4 C -0.54 -29.06 8.34 25.60 0.21 -28.85 16 5 H 0.06 3.18 7.52 -2.91 -0.02 3.16 16 6 C 0.01 0.77 5.29 84.65 0.45 1.22 16 7 N -0.92 -54.10 11.99 21.45 0.26 -53.84 16 8 Si 0.96 43.03 29.54 68.60 2.03 45.05 16 9 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 10 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 N -0.60 -24.33 2.75 -826.79 -2.28 -26.60 16 13 C 0.08 2.37 9.43 127.77 1.20 3.58 16 14 C 0.49 18.89 7.48 87.66 0.66 19.55 16 15 O -0.60 -29.07 13.47 -3.03 -0.04 -29.11 16 16 C -0.16 -3.92 3.90 29.84 0.12 -3.80 16 17 C 0.12 3.04 2.42 44.91 0.11 3.15 16 18 H 0.06 1.77 7.96 -2.39 -0.02 1.75 16 19 N -0.84 -23.71 8.59 -168.70 -1.45 -25.16 16 20 C -0.07 -1.21 5.00 29.85 0.15 -1.06 16 21 C -0.08 -1.65 4.95 -19.86 -0.10 -1.75 16 22 C -0.11 -2.31 9.32 22.27 0.21 -2.10 16 23 C -0.14 -2.77 10.05 22.27 0.22 -2.55 16 24 C -0.14 -2.73 10.05 22.27 0.22 -2.51 16 25 C -0.13 -2.71 10.05 22.27 0.22 -2.49 16 26 C -0.14 -2.93 9.70 22.27 0.22 -2.72 16 27 H 0.05 2.63 6.84 -2.39 -0.02 2.61 16 28 H 0.05 2.21 6.88 -2.39 -0.02 2.19 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 31 H 0.05 1.51 8.09 -2.38 -0.02 1.49 16 32 H 0.10 1.95 6.44 -2.39 -0.02 1.93 16 33 H 0.07 2.04 6.53 -2.39 -0.02 2.02 16 34 H 0.12 2.23 7.40 -2.39 -0.02 2.21 16 35 H 0.11 2.22 8.11 -2.39 -0.02 2.20 16 36 H 0.34 7.97 9.00 -89.69 -0.81 7.17 16 37 H 0.34 12.21 6.89 -89.70 -0.62 11.59 16 38 H 0.09 1.36 8.09 -2.39 -0.02 1.34 16 39 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 40 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 41 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.13 1.99 8.06 -2.91 -0.02 1.97 16 43 H 0.13 2.10 8.06 -2.91 -0.02 2.07 16 44 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -70.70 356.42 2.73 -67.97 By element: Atomic # 1 Polarization: 34.35 SS G_CDS: -0.43 Total: 33.92 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 4.64 Total: -12.23 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -3.47 Total: -105.61 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.04 Total: -29.11 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Total: -70.70 2.73 -67.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602594422.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.204 kcal (2) G-P(sol) polarization free energy of solvation -70.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds