Wall clock time and date at job start Tue Mar 31 2020 07:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47432 * 2 1 4 4 C 1.53000 * 109.47257 * 120.00092 * 2 1 3 5 5 C 1.50712 * 109.46966 * 294.99835 * 4 2 1 6 6 H 1.07998 * 119.99389 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00078 * 180.27548 * 5 4 2 8 8 N 1.31516 * 119.99953 * 359.72126 * 7 5 4 9 9 Si 1.86796 * 119.99931 * 179.72228 * 7 5 4 10 10 H 1.48506 * 109.47119 * 90.00180 * 9 7 5 11 11 H 1.48501 * 109.47336 * 209.99852 * 9 7 5 12 12 H 1.48492 * 109.47434 * 330.00306 * 9 7 5 13 13 C 1.53005 * 109.47141 * 239.99644 * 2 1 3 14 14 N 1.46897 * 109.46959 * 175.47091 * 13 2 1 15 15 C 1.47845 * 111.00112 * 284.77385 * 14 13 2 16 16 C 1.54912 * 104.79608 * 213.63750 * 15 14 13 17 17 C 1.55142 * 101.65293 * 37.07042 * 16 15 14 18 18 H 1.09002 * 110.70484 * 82.72689 * 17 16 15 19 19 O 1.42897 * 110.85907 * 205.89050 * 17 16 15 20 20 C 1.35732 * 116.99948 * 269.77581 * 19 17 16 21 21 C 1.39259 * 120.85116 * 4.81698 * 20 19 17 22 22 C 1.37970 * 119.09251 * 179.77515 * 21 20 19 23 23 N 1.31963 * 120.82537 * 0.50612 * 22 21 20 24 24 C 1.31964 * 121.86061 * 359.74602 * 23 22 21 25 25 C 1.37970 * 120.82075 * 359.97438 * 24 23 22 26 26 C 1.47442 * 110.99726 * 163.93016 * 14 13 2 27 27 H 1.08997 * 109.47187 * 181.98206 * 1 2 3 28 28 H 1.09004 * 109.46885 * 301.98316 * 1 2 3 29 29 H 1.09002 * 109.47139 * 61.97973 * 1 2 3 30 30 H 1.08997 * 109.47513 * 175.00079 * 4 2 1 31 31 H 1.09001 * 109.47253 * 54.99417 * 4 2 1 32 32 H 0.96998 * 119.99754 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46971 * 295.47388 * 13 2 1 34 34 H 1.09002 * 109.46947 * 55.47457 * 13 2 1 35 35 H 1.08998 * 110.37107 * 332.46830 * 15 14 13 36 36 H 1.08995 * 110.36951 * 94.81014 * 15 14 13 37 37 H 1.08997 * 110.98922 * 278.97856 * 16 15 14 38 38 H 1.08998 * 111.01940 * 155.17571 * 16 15 14 39 39 H 1.08004 * 120.45044 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.58728 * 180.27441 * 22 21 20 41 41 H 1.07997 * 119.58682 * 180.02562 * 24 23 22 42 42 H 1.08008 * 120.45152 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.89517 * 242.66147 * 26 14 13 44 44 H 1.09000 * 109.88953 * 3.85849 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0571 2.4767 6 1 1.0807 0.9746 2.3756 7 6 1.9977 -0.3989 3.7280 8 7 2.6808 -1.5160 3.8509 9 14 1.5102 0.5700 5.2489 10 1 0.1847 0.1035 5.7291 11 1 2.5238 0.3622 6.3142 12 1 1.4346 2.0143 4.9126 13 6 2.0400 -0.7213 -1.2492 14 7 3.5049 -0.6273 -1.3051 15 6 3.9336 0.7251 -1.7209 16 6 5.2265 0.4952 -2.5426 17 6 4.8926 -0.8227 -3.2901 18 1 4.3024 -0.6199 -4.1838 19 8 6.0858 -1.5339 -3.6254 20 6 6.6501 -1.2579 -4.8286 21 6 6.1381 -0.2515 -5.6435 22 6 6.7430 0.0015 -6.8575 23 7 7.7866 -0.7028 -7.2527 24 6 8.2973 -1.6675 -6.5111 25 6 7.7528 -1.9777 -5.2819 26 6 4.0615 -1.6088 -2.2543 27 1 -0.3633 -1.0270 0.0355 28 1 -0.3633 0.5443 0.8717 29 1 -0.3633 0.4828 -0.9072 30 1 3.1263 -0.7995 1.2056 31 1 1.6053 -1.7198 1.2952 32 1 2.9318 -1.8365 4.7313 33 1 1.7444 -1.7697 -1.2095 34 1 1.6120 -0.2565 -2.1374 35 1 3.1680 1.1920 -2.3407 36 1 4.1439 1.3418 -0.8472 37 1 6.0876 0.3649 -1.8872 38 1 5.3934 1.3113 -3.2456 39 1 5.2811 0.3253 -5.3281 40 1 6.3552 0.7832 -7.4939 41 1 9.1525 -2.2204 -6.8704 42 1 8.1758 -2.7682 -4.6796 43 1 4.7009 -2.3152 -1.7250 44 1 3.2523 -2.1407 -2.7548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602641203.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:14 Heat of formation + Delta-G solvation = -5.012646 kcal Electronic energy + Delta-G solvation = -22747.216256 eV Core-core repulsion = 19471.561593 eV Total energy + Delta-G solvation = -3275.654663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.96453 -39.36889 -37.76278 -35.05740 -32.38552 -31.69368 -31.47401 -30.34866 -28.65776 -26.96765 -25.31019 -23.83432 -23.46873 -22.82777 -21.38405 -20.83022 -19.01021 -18.79757 -16.99638 -16.35815 -16.18628 -15.79821 -15.54111 -15.23084 -14.61262 -14.44531 -14.25890 -13.90421 -13.82148 -13.57024 -13.21835 -13.02240 -12.66804 -12.39796 -11.92971 -11.84638 -11.56370 -11.39062 -11.14726 -11.12087 -10.86096 -10.83195 -10.78682 -10.32840 -10.19301 -9.83469 -9.67219 -9.53524 -9.10717 -9.06411 -8.86189 -8.25320 -7.96857 -5.89085 -3.89723 0.80655 1.07798 2.74062 3.35852 3.42491 3.45107 3.54029 4.06535 4.17377 4.31283 4.43007 4.53193 4.55787 4.62368 4.68311 4.92344 4.96529 5.23684 5.26766 5.40782 5.46199 5.46660 5.48914 5.54776 5.65934 5.75750 5.79683 5.95351 5.96899 6.02191 6.11201 6.23659 6.27966 6.32114 6.46064 6.92896 6.99118 7.02333 7.19362 7.27692 7.42012 7.71795 7.84218 8.05623 8.19671 8.56124 9.18163 9.72533 11.22066 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031401 B = 0.002795 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.479916 B =10014.358944 C =10371.154177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 H 0.055 0.945 4 C 0.035 3.965 5 C -0.513 4.513 6 H 0.052 0.948 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.885 3.115 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.276 1.276 13 C 0.057 3.943 14 N -0.507 5.507 15 C 0.047 3.953 16 C -0.150 4.150 17 C 0.060 3.940 18 H 0.081 0.919 19 O -0.293 6.293 20 C 0.177 3.823 21 C -0.264 4.264 22 C 0.135 3.865 23 N -0.514 5.514 24 C 0.131 3.869 25 C -0.209 4.209 26 C 0.050 3.950 27 H 0.045 0.955 28 H 0.063 0.937 29 H 0.027 0.973 30 H 0.033 0.967 31 H 0.009 0.991 32 H 0.258 0.742 33 H 0.070 0.930 34 H 0.022 0.978 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.139 0.861 40 H 0.157 0.843 41 H 0.161 0.839 42 H 0.143 0.857 43 H 0.092 0.908 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.599 1.502 -20.555 21.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.100 4.100 3 H 0.074 0.926 4 C -0.002 4.002 5 C -0.552 4.552 6 H 0.070 0.930 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.713 3.287 10 H -0.209 1.209 11 H -0.214 1.214 12 H -0.201 1.201 13 C -0.070 4.070 14 N -0.232 5.232 15 C -0.080 4.080 16 C -0.188 4.188 17 C 0.003 3.997 18 H 0.099 0.901 19 O -0.203 6.203 20 C 0.122 3.878 21 C -0.285 4.285 22 C -0.022 4.022 23 N -0.227 5.227 24 C -0.024 4.024 25 C -0.229 4.229 26 C -0.078 4.078 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.046 0.954 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.157 0.843 40 H 0.174 0.826 41 H 0.179 0.821 42 H 0.160 0.840 43 H 0.111 0.889 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.268 1.311 -20.525 21.813 hybrid contribution -1.137 0.612 0.964 1.611 sum 6.131 1.923 -19.561 20.589 Atomic orbital electron populations 1.21711 0.96403 1.01005 0.99964 1.21183 0.94178 0.99224 0.95458 0.92643 1.19056 0.97459 0.94483 0.89236 1.21305 1.34278 1.08217 0.91396 0.93020 1.24990 0.95469 0.95110 0.98886 1.69975 1.39048 1.21282 1.23119 0.86712 0.78132 0.80468 0.83349 1.20879 1.21369 1.20063 1.22570 0.85462 1.01154 0.97824 1.63616 1.11044 1.02833 1.45666 1.23010 0.94380 0.91852 0.98783 1.23263 1.00257 0.95905 0.99383 1.23949 0.84340 0.93077 0.98319 0.90100 1.86155 1.40283 1.62424 1.31417 1.19409 0.91827 0.91893 0.84632 1.22297 1.05325 1.02488 0.98407 1.22564 0.90495 0.96214 0.92906 1.67729 1.12153 1.07606 1.35244 1.22628 0.97513 0.92775 0.89483 1.21564 0.98186 1.03921 0.99259 1.22865 0.97380 0.95848 0.91706 0.93571 0.91779 0.95379 0.94836 0.97290 0.93248 0.91199 0.96021 0.93551 0.89033 0.89135 0.90615 0.84318 0.82624 0.82135 0.83954 0.88935 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.97 37.16 0.33 -2.10 16 2 C -0.08 -1.62 2.39 -90.62 -0.22 -1.83 16 3 H 0.06 1.12 7.61 -51.93 -0.40 0.72 16 4 C 0.03 0.88 4.39 -27.88 -0.12 0.76 16 5 C -0.51 -14.37 8.43 -34.44 -0.29 -14.66 16 6 H 0.05 1.41 7.05 -52.49 -0.37 1.04 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -27.17 13.29 55.43 0.74 -26.43 16 9 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.06 0.95 4.08 -3.82 -0.02 0.93 16 14 N -0.51 -8.11 4.47 -231.24 -1.03 -9.14 16 15 C 0.05 0.64 6.02 -2.29 -0.01 0.63 16 16 C -0.15 -1.72 6.67 -24.59 -0.16 -1.88 16 17 C 0.06 0.69 2.74 -24.90 -0.07 0.62 16 18 H 0.08 0.80 6.28 -51.93 -0.33 0.47 16 19 O -0.29 -3.58 9.89 -18.90 -0.19 -3.77 16 20 C 0.18 1.94 6.73 -38.82 -0.26 1.68 16 21 C -0.26 -2.52 9.00 -39.30 -0.35 -2.88 16 22 C 0.13 1.24 11.17 -17.59 -0.20 1.05 16 23 N -0.51 -5.41 10.36 -13.33 -0.14 -5.55 16 24 C 0.13 1.19 11.17 -17.59 -0.20 1.00 16 25 C -0.21 -2.02 10.08 -39.30 -0.40 -2.42 16 26 C 0.05 0.68 6.62 -2.83 -0.02 0.66 16 27 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 1.26 7.01 -51.93 -0.36 0.90 16 29 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.03 0.93 7.60 -51.93 -0.39 0.53 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.07 1.17 7.85 -51.93 -0.41 0.76 16 34 H 0.02 0.31 7.67 -51.93 -0.40 -0.09 16 35 H 0.05 0.57 7.52 -51.93 -0.39 0.18 16 36 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 37 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.08 0.71 7.85 -51.93 -0.41 0.30 16 39 H 0.14 1.12 5.82 -52.48 -0.31 0.82 16 40 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 43 H 0.09 1.36 8.06 -51.93 -0.42 0.94 16 44 H 0.06 0.77 7.46 -51.93 -0.39 0.38 16 LS Contribution 353.75 15.07 5.33 5.33 Total: -1.00 -31.79 353.75 -9.47 -41.26 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.08 Total: -1.57 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.08 Total: -16.94 kcal Atomic # 7 Polarization: -40.68 SS G_CDS: -0.44 Total: -41.12 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.19 Total: -3.77 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.79 -9.47 -41.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641203.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.246 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds