Wall clock time and date at job start Tue Mar 31 2020 07:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47432 * 2 1 4 4 C 1.53000 * 109.47257 * 120.00092 * 2 1 3 5 5 C 1.50712 * 109.46966 * 294.99835 * 4 2 1 6 6 H 1.07998 * 119.99389 * 359.97438 * 5 4 2 7 7 C 1.37871 * 120.00078 * 180.27548 * 5 4 2 8 8 N 1.31516 * 119.99953 * 359.72126 * 7 5 4 9 9 Si 1.86796 * 119.99931 * 179.72228 * 7 5 4 10 10 H 1.48506 * 109.47119 * 90.00180 * 9 7 5 11 11 H 1.48501 * 109.47336 * 209.99852 * 9 7 5 12 12 H 1.48492 * 109.47434 * 330.00306 * 9 7 5 13 13 C 1.53005 * 109.47141 * 239.99644 * 2 1 3 14 14 N 1.46897 * 109.46959 * 175.47091 * 13 2 1 15 15 C 1.47845 * 111.00112 * 284.77385 * 14 13 2 16 16 C 1.54912 * 104.79608 * 213.63750 * 15 14 13 17 17 C 1.55142 * 101.65293 * 37.07042 * 16 15 14 18 18 H 1.09002 * 110.70484 * 82.72689 * 17 16 15 19 19 O 1.42897 * 110.85907 * 205.89050 * 17 16 15 20 20 C 1.35732 * 116.99948 * 269.77581 * 19 17 16 21 21 C 1.39259 * 120.85116 * 4.81698 * 20 19 17 22 22 C 1.37970 * 119.09251 * 179.77515 * 21 20 19 23 23 N 1.31963 * 120.82537 * 0.50612 * 22 21 20 24 24 C 1.31964 * 121.86061 * 359.74602 * 23 22 21 25 25 C 1.37970 * 120.82075 * 359.97438 * 24 23 22 26 26 C 1.47442 * 110.99726 * 163.93016 * 14 13 2 27 27 H 1.08997 * 109.47187 * 181.98206 * 1 2 3 28 28 H 1.09004 * 109.46885 * 301.98316 * 1 2 3 29 29 H 1.09002 * 109.47139 * 61.97973 * 1 2 3 30 30 H 1.08997 * 109.47513 * 175.00079 * 4 2 1 31 31 H 1.09001 * 109.47253 * 54.99417 * 4 2 1 32 32 H 0.96998 * 119.99754 * 179.97438 * 8 7 5 33 33 H 1.08997 * 109.46971 * 295.47388 * 13 2 1 34 34 H 1.09002 * 109.46947 * 55.47457 * 13 2 1 35 35 H 1.08998 * 110.37107 * 332.46830 * 15 14 13 36 36 H 1.08995 * 110.36951 * 94.81014 * 15 14 13 37 37 H 1.08997 * 110.98922 * 278.97856 * 16 15 14 38 38 H 1.08998 * 111.01940 * 155.17571 * 16 15 14 39 39 H 1.08004 * 120.45044 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.58728 * 180.27441 * 22 21 20 41 41 H 1.07997 * 119.58682 * 180.02562 * 24 23 22 42 42 H 1.08008 * 120.45152 * 180.02562 * 25 24 23 43 43 H 1.09001 * 109.89517 * 242.66147 * 26 14 13 44 44 H 1.09000 * 109.88953 * 3.85849 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0571 2.4767 6 1 1.0807 0.9746 2.3756 7 6 1.9977 -0.3989 3.7280 8 7 2.6808 -1.5160 3.8509 9 14 1.5102 0.5700 5.2489 10 1 0.1847 0.1035 5.7291 11 1 2.5238 0.3622 6.3142 12 1 1.4346 2.0143 4.9126 13 6 2.0400 -0.7213 -1.2492 14 7 3.5049 -0.6273 -1.3051 15 6 3.9336 0.7251 -1.7209 16 6 5.2265 0.4952 -2.5426 17 6 4.8926 -0.8227 -3.2901 18 1 4.3024 -0.6199 -4.1838 19 8 6.0858 -1.5339 -3.6254 20 6 6.6501 -1.2579 -4.8286 21 6 6.1381 -0.2515 -5.6435 22 6 6.7430 0.0015 -6.8575 23 7 7.7866 -0.7028 -7.2527 24 6 8.2973 -1.6675 -6.5111 25 6 7.7528 -1.9777 -5.2819 26 6 4.0615 -1.6088 -2.2543 27 1 -0.3633 -1.0270 0.0355 28 1 -0.3633 0.5443 0.8717 29 1 -0.3633 0.4828 -0.9072 30 1 3.1263 -0.7995 1.2056 31 1 1.6053 -1.7198 1.2952 32 1 2.9318 -1.8365 4.7313 33 1 1.7444 -1.7697 -1.2095 34 1 1.6120 -0.2565 -2.1374 35 1 3.1680 1.1920 -2.3407 36 1 4.1439 1.3418 -0.8472 37 1 6.0876 0.3649 -1.8872 38 1 5.3934 1.3113 -3.2456 39 1 5.2811 0.3253 -5.3281 40 1 6.3552 0.7832 -7.4939 41 1 9.1525 -2.2204 -6.8704 42 1 8.1758 -2.7682 -4.6796 43 1 4.7009 -2.3152 -1.7250 44 1 3.2523 -2.1407 -2.7548 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602641203.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:58:13 Heat of formation + Delta-G solvation = -24.705718 kcal Electronic energy + Delta-G solvation = -22748.070212 eV Core-core repulsion = 19471.561593 eV Total energy + Delta-G solvation = -3276.508619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -41.76065 -40.30881 -38.78918 -36.63373 -34.34425 -32.58434 -32.18808 -31.49731 -29.69436 -28.93454 -26.58701 -24.93965 -24.44807 -24.23810 -22.43868 -21.85696 -20.48640 -19.69988 -18.46796 -17.82656 -17.05708 -16.68206 -16.55382 -16.36648 -16.19884 -15.58146 -15.39246 -14.91093 -14.64997 -14.59458 -14.41098 -14.35491 -14.04681 -13.83195 -13.40749 -13.21562 -12.90839 -12.74409 -12.64145 -12.43900 -12.31412 -12.18373 -12.05853 -11.82030 -11.77183 -11.42440 -10.93908 -10.86596 -10.54901 -10.46671 -10.20976 -9.86851 -9.15163 -8.10973 -6.19419 0.13145 0.32813 1.40020 1.41078 1.51558 1.90467 2.44732 2.84018 2.99764 3.22035 3.37912 3.56591 3.58026 3.72381 3.80488 3.93607 4.09896 4.17289 4.23319 4.26640 4.34457 4.47296 4.52276 4.56684 4.72835 4.74478 4.80974 4.84595 4.85911 4.86811 4.95887 5.00507 5.05925 5.12212 5.31696 5.46580 5.52166 5.59598 5.67437 5.93530 6.03470 6.07753 6.19070 6.24467 6.38658 6.99851 7.03134 7.47855 9.00624 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.031401 B = 0.002795 C = 0.002699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.479916 B =10014.358944 C =10371.154177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.075 4.075 3 H 0.052 0.948 4 C 0.045 3.955 5 C -0.527 4.527 6 H 0.057 0.943 7 C -0.004 4.004 8 N -0.935 5.935 9 Si 0.956 3.044 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.264 1.264 13 C 0.067 3.933 14 N -0.542 5.542 15 C 0.047 3.953 16 C -0.141 4.141 17 C 0.071 3.929 18 H 0.106 0.894 19 O -0.310 6.310 20 C 0.155 3.845 21 C -0.263 4.263 22 C 0.130 3.870 23 N -0.535 5.535 24 C 0.130 3.870 25 C -0.218 4.218 26 C 0.050 3.950 27 H 0.041 0.959 28 H 0.044 0.956 29 H 0.067 0.933 30 H 0.000 1.000 31 H -0.023 1.023 32 H 0.259 0.741 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.156 0.844 40 H 0.183 0.817 41 H 0.187 0.813 42 H 0.150 0.850 43 H 0.069 0.931 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.906 3.074 -22.413 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.094 4.094 3 H 0.071 0.929 4 C 0.008 3.992 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.201 4.201 8 N -0.576 5.576 9 Si 0.781 3.219 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.188 1.188 13 C -0.061 4.061 14 N -0.267 5.267 15 C -0.080 4.080 16 C -0.179 4.179 17 C 0.014 3.986 18 H 0.124 0.876 19 O -0.221 6.221 20 C 0.101 3.899 21 C -0.284 4.284 22 C -0.026 4.026 23 N -0.248 5.248 24 C -0.025 4.025 25 C -0.238 4.238 26 C -0.078 4.078 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.085 0.915 30 H 0.018 0.982 31 H -0.005 1.005 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.122 0.878 39 H 0.173 0.827 40 H 0.200 0.800 41 H 0.204 0.796 42 H 0.168 0.832 43 H 0.087 0.913 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 6.572 2.894 -22.399 23.522 hybrid contribution -0.867 0.088 1.519 1.751 sum 5.705 2.982 -20.880 21.850 Atomic orbital electron populations 1.21636 0.94891 1.00981 1.01050 1.21027 0.95426 0.98524 0.94416 0.92916 1.18866 0.95198 0.93361 0.91817 1.21746 1.33791 1.08439 0.92501 0.92434 1.25918 0.95490 0.96139 1.02511 1.70127 1.40481 1.23130 1.23909 0.85589 0.77897 0.79377 0.79029 1.19970 1.21208 1.18801 1.22371 0.86089 1.00462 0.97148 1.63425 1.10885 1.04609 1.47820 1.22992 0.95977 0.90480 0.98525 1.23190 0.98379 0.97041 0.99286 1.23825 0.84268 0.92087 0.98455 0.87619 1.86126 1.40671 1.62937 1.32400 1.19694 0.92605 0.93066 0.84553 1.22465 1.05672 1.02058 0.98206 1.23027 0.90021 0.96445 0.93130 1.67785 1.12893 1.08265 1.35905 1.23057 0.97952 0.92503 0.89032 1.21787 0.98137 1.04192 0.99726 1.22761 0.97829 0.95346 0.91833 0.93934 0.93680 0.91458 0.98150 1.00459 0.93239 0.91959 0.92632 0.91321 0.91310 0.91117 0.87807 0.82675 0.80049 0.79593 0.83205 0.91288 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.49 8.97 71.98 0.65 -3.85 16 2 C -0.07 -2.96 2.39 -10.79 -0.03 -2.98 16 3 H 0.05 2.10 7.61 -2.39 -0.02 2.08 16 4 C 0.04 2.37 4.39 29.85 0.13 2.50 16 5 C -0.53 -30.04 8.43 25.60 0.22 -29.82 16 6 H 0.06 3.14 7.05 -2.91 -0.02 3.12 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -58.56 13.29 21.45 0.28 -58.27 16 9 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 11 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 12 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 13 C 0.07 2.13 4.08 86.31 0.35 2.48 16 14 N -0.54 -17.30 4.47 -885.52 -3.96 -21.26 16 15 C 0.05 1.23 6.02 86.77 0.52 1.76 16 16 C -0.14 -3.03 6.67 31.98 0.21 -2.82 16 17 C 0.07 1.50 2.74 31.78 0.09 1.58 16 18 H 0.11 1.73 6.28 -2.39 -0.01 1.72 16 19 O -0.31 -7.38 9.89 -90.55 -0.90 -8.27 16 20 C 0.15 3.19 6.73 22.76 0.15 3.34 16 21 C -0.26 -4.39 9.00 22.45 0.20 -4.19 16 22 C 0.13 2.08 11.17 84.61 0.95 3.03 16 23 N -0.54 -10.25 10.36 -196.09 -2.03 -12.28 16 24 C 0.13 2.15 11.17 84.61 0.95 3.09 16 25 C -0.22 -4.01 10.08 22.45 0.23 -3.78 16 26 C 0.05 1.34 6.62 86.65 0.57 1.92 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.73 7.01 -2.39 -0.02 1.71 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.00 0.00 7.60 -2.39 -0.02 -0.01 16 31 H -0.02 -1.34 8.14 -2.39 -0.02 -1.36 16 32 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 33 H 0.06 2.05 7.85 -2.39 -0.02 2.04 16 34 H 0.06 1.41 7.67 -2.39 -0.02 1.39 16 35 H 0.07 1.48 7.52 -2.39 -0.02 1.46 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.10 1.65 7.85 -2.39 -0.02 1.63 16 39 H 0.16 1.97 5.82 -2.91 -0.02 1.95 16 40 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 41 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 43 H 0.07 2.13 8.06 -2.39 -0.02 2.11 16 44 H 0.08 1.80 7.46 -2.39 -0.02 1.78 16 Total: -1.00 -70.77 353.75 2.04 -68.73 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: 0.97 Total: 11.65 kcal Atomic # 6 Polarization: -33.16 SS G_CDS: 5.65 Total: -27.51 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -5.70 Total: -91.81 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.90 Total: -8.27 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -70.77 2.04 -68.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641203.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.026 kcal (2) G-P(sol) polarization free energy of solvation -70.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds