Wall clock time and date at job start Tue Mar 31 2020 07:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35677 * 116.99606 * 2 1 4 4 C 1.38923 * 119.68121 * 180.29794 * 3 2 1 5 5 C 1.38380 * 119.10752 * 180.25170 * 4 3 2 6 6 C 1.50703 * 120.75740 * 179.73546 * 5 4 3 7 7 C 1.53000 * 109.46856 * 275.16352 * 6 5 4 8 8 H 1.09003 * 109.47305 * 53.68837 * 7 6 5 9 9 C 1.52993 * 109.47111 * 173.69084 * 7 6 5 10 10 N 1.46901 * 109.47004 * 293.68937 * 7 6 5 11 11 C 1.46906 * 111.00073 * 159.48112 * 10 7 6 12 12 C 1.52999 * 109.47217 * 182.31098 * 11 10 7 13 13 C 1.50691 * 115.55189 * 31.29895 * 12 11 10 14 14 H 1.08006 * 120.00350 * 274.29966 * 13 12 11 15 15 C 1.37876 * 120.00129 * 94.30416 * 13 12 11 16 16 N 1.31518 * 119.99653 * 353.24910 * 15 13 12 17 17 Si 1.86803 * 120.00299 * 173.25945 * 15 13 12 18 18 H 1.48495 * 109.47539 * 89.99443 * 17 15 13 19 19 H 1.48499 * 109.46895 * 209.99981 * 17 15 13 20 20 H 1.48506 * 109.46569 * 329.99215 * 17 15 13 21 21 C 1.53000 * 117.49300 * 245.59572 * 12 11 10 22 22 C 1.52998 * 117.49554 * 176.97221 * 12 11 10 23 23 C 1.38828 * 118.48567 * 359.46088 * 5 4 3 24 24 C 1.38044 * 119.29136 * 0.27289 * 23 5 4 25 25 N 1.31967 * 120.83479 * 359.97438 * 24 23 5 26 26 H 1.08996 * 109.47724 * 60.00193 * 1 2 3 27 27 H 1.09004 * 109.46854 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47706 * 299.99476 * 1 2 3 29 29 H 1.08001 * 120.44838 * 359.97438 * 4 3 2 30 30 H 1.08995 * 109.46919 * 155.16177 * 6 5 4 31 31 H 1.09000 * 109.47051 * 35.15800 * 6 5 4 32 32 H 1.09003 * 109.47261 * 300.00098 * 9 7 6 33 33 H 1.09003 * 109.47237 * 59.99713 * 9 7 6 34 34 H 1.09003 * 109.47471 * 180.02562 * 9 7 6 35 35 H 1.00899 * 111.00074 * 35.53021 * 10 7 6 36 36 H 1.08995 * 109.46898 * 62.29891 * 11 10 7 37 37 H 1.09010 * 109.46817 * 302.30886 * 11 10 7 38 38 H 0.96999 * 119.99739 * 185.00827 * 16 15 13 39 39 H 1.09001 * 117.49948 * 359.97438 * 21 12 11 40 40 H 1.09002 * 117.50047 * 145.02222 * 21 12 11 41 41 H 1.08999 * 117.49671 * 214.97269 * 22 12 11 42 42 H 1.09001 * 117.50298 * 359.97438 * 22 12 11 43 43 H 1.08007 * 120.35550 * 180.30250 * 23 5 4 44 44 H 1.08003 * 119.58624 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 -0.0063 5 6 4.0483 2.5132 -0.0009 6 6 5.5511 2.6271 -0.0014 7 6 6.0704 2.5295 1.4344 8 1 5.6854 1.6217 1.8991 9 6 7.5997 2.4868 1.4219 10 7 5.6194 3.7001 2.1989 11 6 5.6614 3.4338 3.6430 12 6 5.1315 4.6522 4.4018 13 6 4.0753 5.4545 3.6867 14 1 4.3638 6.2273 2.9895 15 6 2.7405 5.2021 3.9224 16 7 2.3865 4.1773 4.6668 17 14 1.4348 6.3156 3.1843 18 1 1.0410 5.7992 1.8489 19 1 0.2466 6.3429 4.0746 20 1 1.9789 7.6902 3.0428 21 6 6.1166 5.4138 5.2910 22 6 5.0276 4.5456 5.9246 23 6 3.2503 3.6492 -0.0008 24 6 1.8769 3.5097 -0.0004 25 7 1.3184 2.3140 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 4.0229 0.3696 -0.0107 30 1 5.8425 3.5865 -0.4288 31 1 5.9764 1.8196 -0.5973 32 1 7.9343 1.6183 0.8546 33 1 7.9847 3.3946 0.9572 34 1 7.9697 2.4168 2.4448 35 1 4.6958 3.9862 1.9107 36 1 6.6894 3.2356 3.9462 37 1 5.0418 2.5663 3.8707 38 1 1.4480 3.9565 4.7733 39 1 7.1419 5.0466 5.3356 40 1 6.0008 6.4955 5.3588 41 1 4.1954 5.0562 6.4091 42 1 5.3362 3.6074 6.3857 43 1 3.6991 4.6316 -0.0016 44 1 1.2515 4.3902 0.0001 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602641641.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:36 Heat of formation + Delta-G solvation = -3.275461 kcal Electronic energy + Delta-G solvation = -24016.309900 eV Core-core repulsion = 20740.730567 eV Total energy + Delta-G solvation = -3275.579333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = -3.38 seconds Orbital eigenvalues (eV) -41.66352 -39.41779 -38.69785 -37.26686 -34.10342 -33.87008 -31.70565 -31.45844 -28.54886 -27.64618 -27.51985 -25.86202 -24.48033 -22.93688 -22.81999 -21.21066 -20.86256 -18.85886 -18.13289 -17.81071 -17.04345 -16.92000 -16.62304 -16.59588 -15.98581 -15.68144 -15.31251 -15.08121 -14.85647 -14.45674 -14.33310 -13.84590 -13.43754 -13.32499 -13.18104 -12.89512 -12.82421 -12.78896 -12.51801 -12.44640 -12.34375 -12.31117 -12.15896 -11.98723 -11.73045 -11.21345 -10.74819 -10.65422 -10.52684 -10.30981 -9.90500 -9.51471 -8.98890 -8.04154 -6.13608 0.16139 0.28141 1.39101 1.44832 1.52355 2.10941 2.44908 2.75826 3.23172 3.33699 3.43628 3.67577 3.72053 4.04635 4.13876 4.16383 4.23592 4.37000 4.37310 4.41306 4.46872 4.58467 4.62676 4.66382 4.73196 4.79213 4.82238 4.88724 4.98645 5.00421 5.03053 5.12403 5.13781 5.21900 5.30480 5.42639 5.48064 5.52892 5.65954 5.70459 5.80511 6.21199 6.41703 6.61936 6.83547 6.85861 6.94704 7.53307 9.01800 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.012114 B = 0.006980 C = 0.005223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.905903 B = 4010.327886 C = 5359.345336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.298 3.702 4 C -0.195 4.195 5 C -0.007 4.007 6 C -0.073 4.073 7 C 0.080 3.920 8 H 0.018 0.982 9 C -0.129 4.129 10 N -0.673 5.673 11 C 0.120 3.880 12 C 0.018 3.982 13 C -0.483 4.483 14 H 0.056 0.944 15 C 0.031 3.969 16 N -0.908 5.908 17 Si 0.927 3.073 18 H -0.256 1.256 19 H -0.300 1.300 20 H -0.269 1.269 21 C -0.187 4.187 22 C -0.162 4.162 23 C -0.199 4.199 24 C 0.127 3.873 25 N -0.560 5.560 26 H 0.059 0.941 27 H 0.127 0.873 28 H 0.043 0.957 29 H 0.155 0.845 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.043 0.957 35 H 0.348 0.652 36 H 0.055 0.945 37 H -0.015 1.015 38 H 0.252 0.748 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.065 0.935 43 H 0.149 0.851 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.429 -6.206 -11.601 13.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.228 6.228 3 C 0.119 3.881 4 C -0.216 4.216 5 C -0.014 4.014 6 C -0.110 4.110 7 C -0.030 4.030 8 H 0.036 0.964 9 C -0.187 4.187 10 N -0.308 5.308 11 C -0.010 4.010 12 C 0.017 3.983 13 C -0.521 4.521 14 H 0.075 0.925 15 C -0.169 4.169 16 N -0.546 5.546 17 Si 0.753 3.247 18 H -0.180 1.180 19 H -0.227 1.227 20 H -0.193 1.193 21 C -0.224 4.224 22 C -0.200 4.200 23 C -0.219 4.219 24 C -0.028 4.028 25 N -0.285 5.285 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.062 0.938 29 H 0.172 0.828 30 H 0.116 0.884 31 H 0.130 0.870 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.170 0.830 36 H 0.074 0.926 37 H 0.003 0.997 38 H 0.061 0.939 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.167 0.833 44 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.066 -6.306 -11.508 13.476 hybrid contribution -1.518 0.158 0.515 1.611 sum 1.548 -6.148 -10.992 12.689 Atomic orbital electron populations 1.23008 0.76195 1.04578 1.01832 1.86184 1.24139 1.24366 1.88148 1.20075 0.90064 0.84887 0.93038 1.21125 0.91658 0.99871 1.08906 1.20395 0.97788 0.91493 0.91762 1.20877 0.87668 1.05634 0.96849 1.21612 0.97102 0.91663 0.92661 0.96363 1.21728 0.92769 1.02619 1.01598 1.60686 1.33623 1.33298 1.03206 1.21205 0.96483 0.94592 0.88696 1.19074 0.95601 0.94838 0.88738 1.20491 0.89612 1.17873 1.24172 0.92541 1.25549 1.00119 0.96005 0.95177 1.70140 1.16249 1.28226 1.40003 0.86030 0.79043 0.80345 0.79288 1.18030 1.22662 1.19322 1.23064 0.94133 0.97322 1.07883 1.22324 0.99300 0.99380 0.99025 1.22118 0.94491 1.00538 1.04795 1.22587 0.93819 0.93568 0.92810 1.67230 1.41658 0.99276 1.20305 0.92244 0.85522 0.93802 0.82757 0.88415 0.87044 0.90428 0.91573 0.93833 0.82957 0.92631 0.99656 0.93919 0.89432 0.90879 0.92589 0.91684 0.83342 0.82096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.95 10.38 113.37 1.18 2.13 16 2 O -0.32 -10.03 10.48 -89.95 -0.94 -10.97 16 3 C 0.30 10.27 7.49 84.79 0.63 10.90 16 4 C -0.20 -6.07 9.76 22.47 0.22 -5.85 16 5 C -0.01 -0.20 4.71 -19.69 -0.09 -0.29 16 6 C -0.07 -1.80 5.01 29.85 0.15 -1.66 16 7 C 0.08 2.41 2.62 44.91 0.12 2.53 16 8 H 0.02 0.62 7.84 -2.39 -0.02 0.60 16 9 C -0.13 -3.16 9.36 71.98 0.67 -2.49 16 10 N -0.67 -26.07 6.09 -491.56 -2.99 -29.06 16 11 C 0.12 5.29 5.70 86.30 0.49 5.79 16 12 C 0.02 0.88 1.99 -52.93 -0.11 0.77 16 13 C -0.48 -25.21 7.15 25.60 0.18 -25.02 16 14 H 0.06 2.95 7.82 -2.91 -0.02 2.93 16 15 C 0.03 1.68 5.34 84.65 0.45 2.13 16 16 N -0.91 -51.91 12.39 21.45 0.27 -51.65 16 17 Si 0.93 42.04 29.55 68.60 2.03 44.06 16 18 H -0.26 -10.66 6.86 99.48 0.68 -9.98 16 19 H -0.30 -14.10 7.11 99.48 0.71 -13.40 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 C -0.19 -8.11 9.88 30.60 0.30 -7.81 16 22 C -0.16 -7.86 8.97 30.60 0.27 -7.58 16 23 C -0.20 -6.49 8.31 22.37 0.19 -6.30 16 24 C 0.13 4.41 11.18 84.63 0.95 5.35 16 25 N -0.56 -20.30 9.22 -308.94 -2.85 -23.14 16 26 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 27 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.04 1.20 8.10 -2.39 -0.02 1.18 16 29 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 30 H 0.10 2.25 8.07 -2.39 -0.02 2.23 16 31 H 0.11 2.06 8.13 -2.39 -0.02 2.04 16 32 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.04 1.15 7.23 -2.39 -0.02 1.14 16 35 H 0.35 14.74 4.79 -89.69 -0.43 14.32 16 36 H 0.06 2.24 6.96 -2.39 -0.02 2.22 16 37 H -0.01 -0.73 8.01 -2.38 -0.02 -0.75 16 38 H 0.25 14.18 8.32 -92.71 -0.77 13.40 16 39 H 0.09 3.33 8.04 -2.39 -0.02 3.31 16 40 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 41 H 0.06 2.98 7.97 -2.39 -0.02 2.96 16 42 H 0.06 2.99 8.14 -2.39 -0.02 2.97 16 43 H 0.15 4.51 7.96 -2.91 -0.02 4.48 16 44 H 0.16 5.17 7.81 -2.91 -0.02 5.15 16 Total: -1.00 -62.52 360.55 1.64 -60.88 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.52 Total: 37.28 kcal Atomic # 6 Polarization: -33.01 SS G_CDS: 5.61 Total: -27.40 kcal Atomic # 7 Polarization: -98.28 SS G_CDS: -5.58 Total: -103.85 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: -0.94 Total: -10.97 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.06 kcal Total: -62.52 1.64 -60.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641641.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.609 kcal (2) G-P(sol) polarization free energy of solvation -62.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -3.38 seconds