Wall clock time and date at job start Tue Mar 31 2020 07:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35679 * 116.99697 * 2 1 4 4 C 1.38921 * 119.68272 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.11075 * 179.97438 * 4 3 2 6 6 C 1.50697 * 120.75724 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47195 * 90.00073 * 6 5 4 8 8 H 1.09000 * 109.46711 * 304.99583 * 7 6 5 9 9 C 1.53003 * 109.46997 * 185.00364 * 7 6 5 10 10 N 1.46892 * 109.47253 * 64.99876 * 7 6 5 11 11 C 1.46904 * 111.00026 * 204.99932 * 10 7 6 12 12 C 1.52996 * 109.47403 * 174.68892 * 11 10 7 13 13 C 1.50700 * 115.55011 * 39.57750 * 12 11 10 14 14 H 1.08007 * 120.00049 * 265.26829 * 13 12 11 15 15 C 1.37876 * 120.00290 * 85.25882 * 13 12 11 16 16 N 1.31519 * 119.99646 * 353.34500 * 15 13 12 17 17 Si 1.86804 * 120.00236 * 173.34271 * 15 13 12 18 18 H 1.48496 * 109.46737 * 60.00077 * 17 15 13 19 19 H 1.48495 * 109.46872 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46945 * 300.00615 * 17 15 13 21 21 C 1.53003 * 117.50300 * 253.87200 * 12 11 10 22 22 C 1.52995 * 117.50066 * 185.24561 * 12 11 10 23 23 C 1.38832 * 118.48555 * 0.27084 * 5 4 3 24 24 C 1.38048 * 119.28863 * 359.45925 * 23 5 4 25 25 N 1.31962 * 120.83346 * 0.55467 * 24 23 5 26 26 H 1.08998 * 109.46805 * 299.99945 * 1 2 3 27 27 H 1.08996 * 109.47369 * 60.00346 * 1 2 3 28 28 H 1.09004 * 109.46643 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.44426 * 359.97438 * 4 3 2 30 30 H 1.08996 * 109.47075 * 329.99481 * 6 5 4 31 31 H 1.08998 * 109.46786 * 209.99868 * 6 5 4 32 32 H 1.08990 * 109.47302 * 59.99263 * 9 7 6 33 33 H 1.09003 * 109.46942 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.46752 * 299.99194 * 9 7 6 35 35 H 1.00895 * 111.00047 * 81.04977 * 10 7 6 36 36 H 1.08998 * 109.47279 * 294.69456 * 11 10 7 37 37 H 1.09008 * 109.46838 * 54.69227 * 11 10 7 38 38 H 0.97001 * 119.99785 * 185.05586 * 16 15 13 39 39 H 1.09002 * 117.49490 * 359.97438 * 21 12 11 40 40 H 1.08994 * 117.50311 * 145.02283 * 21 12 11 41 41 H 1.09005 * 117.50371 * 214.97933 * 22 12 11 42 42 H 1.09005 * 117.50049 * 359.97438 * 22 12 11 43 43 H 1.08001 * 120.35717 * 179.70681 * 23 5 4 44 44 H 1.08003 * 119.58282 * 180.27505 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 5.5511 2.6270 -0.0022 7 6 6.0586 2.6655 -1.4451 8 1 5.6884 1.7932 -1.9838 9 6 7.5886 2.6553 -1.4481 10 7 5.5757 3.8877 -2.1016 11 6 5.5090 3.7115 -3.5585 12 6 4.8795 4.9528 -4.1940 13 6 5.2952 6.2716 -3.5948 14 1 4.6899 6.7306 -2.8270 15 6 6.4483 6.8921 -4.0264 16 7 7.2532 6.2749 -4.8637 17 14 6.8672 8.6093 -3.4222 18 1 6.9997 8.5950 -1.9433 19 1 8.1487 9.0490 -4.0303 20 1 5.7861 9.5491 -3.8133 21 6 3.4440 4.8318 -4.7095 22 6 4.6078 4.9152 -5.6992 23 6 3.2504 3.6492 0.0047 24 6 1.8770 3.5097 -0.0006 25 7 1.3186 2.3141 -0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.0229 0.3696 -0.0005 30 1 5.9810 1.7672 0.5113 31 1 5.8465 3.5420 0.5113 32 1 7.9468 1.7485 -0.9610 33 1 7.9501 2.6831 -2.4761 34 1 7.9587 3.5276 -0.9095 35 1 6.1516 4.6799 -1.8592 36 1 6.5149 3.5713 -3.9540 37 1 4.9018 2.8366 -3.7912 38 1 8.0995 6.6797 -5.1103 39 1 2.9482 3.8677 -4.5962 40 1 2.8000 5.7060 -4.6152 41 1 4.7294 5.8443 -6.2560 42 1 4.8780 4.0062 -6.2368 43 1 3.6992 4.6315 0.0092 44 1 1.2516 4.3903 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602641642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:44 Heat of formation + Delta-G solvation = 13.673761 kcal Electronic energy + Delta-G solvation = -23508.138119 eV Core-core repulsion = 20233.293759 eV Total energy + Delta-G solvation = -3274.844360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 9.19 seconds Orbital eigenvalues (eV) -40.38435 -38.05603 -37.17763 -35.76050 -32.84369 -31.90615 -30.46235 -29.88219 -27.42141 -26.48338 -25.53277 -24.11757 -23.15698 -21.73610 -20.98514 -20.22012 -18.99164 -17.67794 -16.85779 -15.94080 -15.85642 -15.59390 -14.72766 -14.65651 -14.58991 -14.07664 -13.98363 -13.83588 -13.45115 -13.12589 -12.83183 -12.50987 -12.15030 -11.94052 -11.80065 -11.51387 -11.30412 -11.25285 -11.12207 -10.99749 -10.94995 -10.83595 -10.53612 -10.45064 -10.09471 -9.43535 -9.39788 -9.17009 -8.78172 -8.42144 -8.23134 -8.04083 -7.32489 -6.01240 -4.05614 1.44475 1.61847 3.22777 3.28957 3.35130 3.38078 4.06175 4.40012 4.55180 4.87875 4.94548 5.23232 5.27447 5.30186 5.31550 5.38785 5.40628 5.47450 5.54526 5.59999 5.61806 5.76379 5.85030 5.96500 6.05355 6.15800 6.21202 6.26181 6.33370 6.46728 6.50942 6.63616 6.72926 6.75202 6.82193 6.86589 7.01111 7.17529 7.42317 7.47476 7.55233 7.89626 8.11011 8.11260 8.43526 8.56124 8.96957 9.58317 11.06676 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.004415 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.673030 B = 6339.792118 C = 6686.044680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.315 6.315 3 C 0.307 3.693 4 C -0.196 4.196 5 C 0.019 3.981 6 C -0.071 4.071 7 C 0.086 3.914 8 H 0.068 0.932 9 C -0.179 4.179 10 N -0.665 5.665 11 C 0.110 3.890 12 C 0.055 3.945 13 C -0.481 4.481 14 H 0.060 0.940 15 C 0.069 3.931 16 N -0.882 5.882 17 Si 0.886 3.114 18 H -0.277 1.277 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.206 4.206 22 C -0.165 4.165 23 C -0.167 4.167 24 C 0.131 3.869 25 N -0.549 5.549 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.132 0.868 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.056 0.944 35 H 0.353 0.647 36 H 0.028 0.972 37 H 0.033 0.967 38 H 0.258 0.742 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.078 0.922 42 H 0.058 0.942 43 H 0.141 0.859 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.456 -9.446 10.121 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.223 6.223 3 C 0.129 3.871 4 C -0.217 4.217 5 C 0.011 3.989 6 C -0.109 4.109 7 C -0.026 4.026 8 H 0.087 0.913 9 C -0.238 4.238 10 N -0.297 5.297 11 C -0.019 4.019 12 C 0.054 3.946 13 C -0.519 4.519 14 H 0.079 0.921 15 C -0.134 4.134 16 N -0.519 5.519 17 Si 0.714 3.286 18 H -0.202 1.202 19 H -0.216 1.216 20 H -0.204 1.204 21 C -0.244 4.244 22 C -0.203 4.203 23 C -0.187 4.187 24 C -0.024 4.024 25 N -0.273 5.273 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.108 0.892 29 H 0.150 0.850 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.174 0.826 36 H 0.046 0.954 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.159 0.841 44 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -6.775 -9.879 10.057 15.641 hybrid contribution 1.883 1.153 -0.227 2.219 sum -4.892 -8.726 9.830 14.025 Atomic orbital electron populations 1.22759 0.77859 1.02317 1.02286 1.86198 1.22431 1.25156 1.88480 1.19708 0.89258 0.84522 0.93623 1.20846 0.91751 0.98975 1.10101 1.19931 0.96345 0.91525 0.91075 1.20712 0.89810 1.02597 0.97776 1.21482 0.92044 0.95540 0.93499 0.91338 1.22494 0.97546 1.01401 1.02356 1.60502 1.56498 1.03560 1.09131 1.21343 0.97881 0.96179 0.86470 1.18759 0.90708 0.93972 0.91151 1.20336 1.08119 1.02539 1.20889 0.92143 1.24990 0.96666 0.97108 0.94604 1.69991 1.09886 1.38352 1.33668 0.86769 0.77474 0.85469 0.78920 1.20238 1.21593 1.20350 1.22961 0.93246 0.99350 1.08815 1.22519 1.02806 0.99950 0.94990 1.21895 0.93996 1.00050 1.02744 1.22317 0.93176 0.93192 0.93678 1.67222 1.41072 0.98911 1.20113 0.92642 0.92469 0.89160 0.85012 0.91010 0.90260 0.93115 0.92217 0.92460 0.82563 0.95421 0.94855 0.93171 0.92148 0.90870 0.90347 0.92360 0.84080 0.82835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.38 101.05 1.05 1.52 16 2 O -0.31 -4.46 10.48 -18.74 -0.20 -4.65 16 3 C 0.31 4.72 7.49 -17.12 -0.13 4.59 16 4 C -0.20 -2.83 9.75 -39.28 -0.38 -3.21 16 5 C 0.02 0.27 4.97 -104.35 -0.52 -0.25 16 6 C -0.07 -0.92 5.07 -27.88 -0.14 -1.06 16 7 C 0.09 1.30 2.58 -67.72 -0.17 1.12 16 8 H 0.07 1.09 7.71 -51.93 -0.40 0.69 16 9 C -0.18 -2.54 9.16 37.16 0.34 -2.20 16 10 N -0.66 -12.37 5.44 -106.73 -0.58 -12.95 16 11 C 0.11 2.38 5.63 -3.82 -0.02 2.36 16 12 C 0.05 1.31 1.76 -155.66 -0.27 1.03 16 13 C -0.48 -12.27 7.47 -34.44 -0.26 -12.53 16 14 H 0.06 1.56 7.82 -52.48 -0.41 1.15 16 15 C 0.07 1.79 5.39 -17.82 -0.10 1.69 16 16 N -0.88 -23.94 12.93 55.43 0.72 -23.22 16 17 Si 0.89 20.30 29.55 -169.99 -5.02 15.28 16 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 C -0.21 -4.62 9.88 -26.73 -0.26 -4.89 16 22 C -0.16 -3.90 9.46 -26.73 -0.25 -4.16 16 23 C -0.17 -2.45 9.48 -39.43 -0.37 -2.82 16 24 C 0.13 1.90 11.18 -17.57 -0.20 1.70 16 25 N -0.55 -8.52 9.22 -13.33 -0.12 -8.64 16 26 H 0.05 0.58 8.10 -51.93 -0.42 0.16 16 27 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 30 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 31 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.96 7.56 -51.93 -0.39 0.57 16 34 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 35 H 0.35 7.14 7.45 -39.29 -0.29 6.85 16 36 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 37 H 0.03 0.70 7.73 -51.92 -0.40 0.30 16 38 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 39 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 40 H 0.07 1.64 8.14 -51.93 -0.42 1.21 16 41 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.14 2.04 8.06 -52.49 -0.42 1.62 16 44 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 LS Contribution 366.23 15.07 5.52 5.52 Total: -1.00 -27.91 366.23 -8.71 -36.63 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -7.33 Total: 9.13 kcal Atomic # 6 Polarization: -15.40 SS G_CDS: -1.69 Total: -17.09 kcal Atomic # 7 Polarization: -44.83 SS G_CDS: 0.01 Total: -44.82 kcal Atomic # 8 Polarization: -4.46 SS G_CDS: -0.20 Total: -4.65 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -27.91 -8.71 -36.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.301 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.19 seconds