Wall clock time and date at job start Tue Mar 31 2020 07:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35679 * 116.99697 * 2 1 4 4 C 1.38921 * 119.68272 * 180.02562 * 3 2 1 5 5 C 1.38376 * 119.11075 * 179.97438 * 4 3 2 6 6 C 1.50697 * 120.75724 * 180.02562 * 5 4 3 7 7 C 1.53001 * 109.47195 * 90.00073 * 6 5 4 8 8 H 1.09000 * 109.46711 * 304.99583 * 7 6 5 9 9 C 1.53003 * 109.46997 * 185.00364 * 7 6 5 10 10 N 1.46892 * 109.47253 * 64.99876 * 7 6 5 11 11 C 1.46904 * 111.00026 * 204.99932 * 10 7 6 12 12 C 1.52996 * 109.47403 * 174.68892 * 11 10 7 13 13 C 1.50700 * 115.55011 * 39.57750 * 12 11 10 14 14 H 1.08007 * 120.00049 * 265.26829 * 13 12 11 15 15 C 1.37876 * 120.00290 * 85.25882 * 13 12 11 16 16 N 1.31519 * 119.99646 * 353.34500 * 15 13 12 17 17 Si 1.86804 * 120.00236 * 173.34271 * 15 13 12 18 18 H 1.48496 * 109.46737 * 60.00077 * 17 15 13 19 19 H 1.48495 * 109.46872 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.46945 * 300.00615 * 17 15 13 21 21 C 1.53003 * 117.50300 * 253.87200 * 12 11 10 22 22 C 1.52995 * 117.50066 * 185.24561 * 12 11 10 23 23 C 1.38832 * 118.48555 * 0.27084 * 5 4 3 24 24 C 1.38048 * 119.28863 * 359.45925 * 23 5 4 25 25 N 1.31962 * 120.83346 * 0.55467 * 24 23 5 26 26 H 1.08998 * 109.46805 * 299.99945 * 1 2 3 27 27 H 1.08996 * 109.47369 * 60.00346 * 1 2 3 28 28 H 1.09004 * 109.46643 * 180.02562 * 1 2 3 29 29 H 1.07995 * 120.44426 * 359.97438 * 4 3 2 30 30 H 1.08996 * 109.47075 * 329.99481 * 6 5 4 31 31 H 1.08998 * 109.46786 * 209.99868 * 6 5 4 32 32 H 1.08990 * 109.47302 * 59.99263 * 9 7 6 33 33 H 1.09003 * 109.46942 * 180.02562 * 9 7 6 34 34 H 1.09000 * 109.46752 * 299.99194 * 9 7 6 35 35 H 1.00895 * 111.00047 * 81.04977 * 10 7 6 36 36 H 1.08998 * 109.47279 * 294.69456 * 11 10 7 37 37 H 1.09008 * 109.46838 * 54.69227 * 11 10 7 38 38 H 0.97001 * 119.99785 * 185.05586 * 16 15 13 39 39 H 1.09002 * 117.49490 * 359.97438 * 21 12 11 40 40 H 1.08994 * 117.50311 * 145.02283 * 21 12 11 41 41 H 1.09005 * 117.50371 * 214.97933 * 22 12 11 42 42 H 1.09005 * 117.50049 * 359.97438 * 22 12 11 43 43 H 1.08001 * 120.35717 * 179.70681 * 23 5 4 44 44 H 1.08003 * 119.58282 * 180.27505 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2740 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 5.5511 2.6270 -0.0022 7 6 6.0586 2.6655 -1.4451 8 1 5.6884 1.7932 -1.9838 9 6 7.5886 2.6553 -1.4481 10 7 5.5757 3.8877 -2.1016 11 6 5.5090 3.7115 -3.5585 12 6 4.8795 4.9528 -4.1940 13 6 5.2952 6.2716 -3.5948 14 1 4.6899 6.7306 -2.8270 15 6 6.4483 6.8921 -4.0264 16 7 7.2532 6.2749 -4.8637 17 14 6.8672 8.6093 -3.4222 18 1 6.9997 8.5950 -1.9433 19 1 8.1487 9.0490 -4.0303 20 1 5.7861 9.5491 -3.8133 21 6 3.4440 4.8318 -4.7095 22 6 4.6078 4.9152 -5.6992 23 6 3.2504 3.6492 0.0047 24 6 1.8770 3.5097 -0.0006 25 7 1.3186 2.3141 -0.0001 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 4.0229 0.3696 -0.0005 30 1 5.9810 1.7672 0.5113 31 1 5.8465 3.5420 0.5113 32 1 7.9468 1.7485 -0.9610 33 1 7.9501 2.6831 -2.4761 34 1 7.9587 3.5276 -0.9095 35 1 6.1516 4.6799 -1.8592 36 1 6.5149 3.5713 -3.9540 37 1 4.9018 2.8366 -3.7912 38 1 8.0995 6.6797 -5.1103 39 1 2.9482 3.8677 -4.5962 40 1 2.8000 5.7060 -4.6152 41 1 4.7294 5.8443 -6.2560 42 1 4.8780 4.0062 -6.2368 43 1 3.6992 4.6315 0.0092 44 1 1.2516 4.3903 -0.0006 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602641642.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:33:40 Heat of formation + Delta-G solvation = -2.617173 kcal Electronic energy + Delta-G solvation = -23508.844546 eV Core-core repulsion = 20233.293759 eV Total energy + Delta-G solvation = -3275.550788 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.54 seconds Orbital eigenvalues (eV) -41.46756 -39.26745 -38.65426 -37.23813 -34.08132 -33.89796 -31.54538 -31.23940 -28.43174 -27.51898 -27.48031 -25.75057 -24.25753 -22.89123 -22.83380 -21.50469 -20.80012 -18.75775 -18.00261 -17.75706 -16.88251 -16.69306 -16.54982 -16.14115 -15.94567 -15.57935 -15.16654 -15.08987 -14.76305 -14.38225 -14.31916 -13.87502 -13.49331 -13.12649 -13.08559 -12.96564 -12.80651 -12.71959 -12.64025 -12.44074 -12.33299 -12.24896 -12.03780 -11.95933 -11.72861 -11.23395 -10.72170 -10.51549 -10.41871 -10.27594 -9.89156 -9.32913 -8.86977 -8.00859 -6.09563 0.34553 0.49316 1.46514 1.49791 1.54898 2.24253 2.48688 2.94296 3.27028 3.42854 3.50623 3.71458 3.85846 4.21516 4.24241 4.30419 4.36778 4.40474 4.46366 4.47527 4.50172 4.58187 4.62184 4.74495 4.79741 4.82638 4.89712 4.92433 4.95886 5.02156 5.09721 5.13209 5.17481 5.24725 5.31660 5.37482 5.63414 5.65375 5.67223 5.70156 5.86420 6.36560 6.46779 6.64276 6.86056 6.98185 7.00040 7.56715 9.06384 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.018064 B = 0.004415 C = 0.004187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.673030 B = 6339.792118 C = 6686.044680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.325 6.325 3 C 0.292 3.708 4 C -0.201 4.201 5 C 0.014 3.986 6 C -0.062 4.062 7 C 0.087 3.913 8 H 0.063 0.937 9 C -0.172 4.172 10 N -0.662 5.662 11 C 0.126 3.874 12 C 0.036 3.964 13 C -0.482 4.482 14 H 0.055 0.945 15 C 0.030 3.970 16 N -0.910 5.910 17 Si 0.942 3.058 18 H -0.265 1.265 19 H -0.294 1.294 20 H -0.281 1.281 21 C -0.188 4.188 22 C -0.172 4.172 23 C -0.176 4.176 24 C 0.122 3.878 25 N -0.562 5.562 26 H 0.055 0.945 27 H 0.049 0.951 28 H 0.122 0.878 29 H 0.148 0.852 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.034 0.966 34 H 0.057 0.943 35 H 0.344 0.656 36 H 0.002 0.998 37 H 0.036 0.964 38 H 0.256 0.744 39 H 0.075 0.925 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.065 0.935 43 H 0.140 0.860 44 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.662 -10.096 11.579 16.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.233 6.233 3 C 0.114 3.886 4 C -0.221 4.221 5 C 0.007 3.993 6 C -0.100 4.100 7 C -0.024 4.024 8 H 0.081 0.919 9 C -0.231 4.231 10 N -0.293 5.293 11 C -0.004 4.004 12 C 0.035 3.965 13 C -0.521 4.521 14 H 0.073 0.927 15 C -0.170 4.170 16 N -0.548 5.548 17 Si 0.769 3.231 18 H -0.190 1.190 19 H -0.220 1.220 20 H -0.207 1.207 21 C -0.225 4.225 22 C -0.210 4.210 23 C -0.197 4.197 24 C -0.032 4.032 25 N -0.287 5.287 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.140 0.860 29 H 0.166 0.834 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.164 0.836 36 H 0.020 0.980 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.084 0.916 43 H 0.158 0.842 44 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -6.997 -10.541 11.533 17.120 hybrid contribution 1.873 1.308 -0.684 2.385 sum -5.124 -9.233 10.850 15.140 Atomic orbital electron populations 1.22976 0.76318 1.04317 1.01907 1.86186 1.24023 1.24689 1.88356 1.20011 0.89916 0.84869 0.93838 1.21073 0.91706 0.99658 1.09704 1.20107 0.97029 0.91408 0.90801 1.20678 0.88953 1.04224 0.96155 1.21549 0.92768 0.93571 0.94508 0.91867 1.22399 0.96621 1.02921 1.01115 1.60478 1.56787 1.04757 1.07295 1.21071 0.96106 0.95060 0.88135 1.18968 0.91936 0.94463 0.91126 1.20476 1.07885 1.03194 1.20510 0.92701 1.25549 0.96674 0.99916 0.94872 1.70105 1.10132 1.39613 1.34940 0.85873 0.76688 0.81593 0.78993 1.19002 1.21999 1.20661 1.22913 0.92529 1.00044 1.06998 1.22428 1.04274 0.99202 0.95103 1.21996 0.94270 1.00258 1.03141 1.22660 0.93591 0.93601 0.93375 1.67250 1.41513 0.99274 1.20627 0.92585 0.93242 0.86027 0.83395 0.88187 0.89691 0.90210 0.94705 0.92400 0.83638 0.98004 0.94536 0.93514 0.90639 0.90938 0.92551 0.91638 0.84186 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.38 113.37 1.18 1.97 16 2 O -0.32 -8.73 10.48 -89.96 -0.94 -9.67 16 3 C 0.29 8.60 7.49 84.79 0.63 9.24 16 4 C -0.20 -5.42 9.75 22.47 0.22 -5.20 16 5 C 0.01 0.38 4.97 -19.69 -0.10 0.28 16 6 C -0.06 -1.45 5.07 29.85 0.15 -1.30 16 7 C 0.09 2.48 2.58 44.92 0.12 2.60 16 8 H 0.06 1.90 7.71 -2.39 -0.02 1.88 16 9 C -0.17 -4.59 9.16 71.98 0.66 -3.93 16 10 N -0.66 -24.15 5.44 -491.57 -2.67 -26.82 16 11 C 0.13 5.41 5.63 86.30 0.49 5.90 16 12 C 0.04 1.70 1.76 -52.93 -0.09 1.61 16 13 C -0.48 -24.57 7.47 25.60 0.19 -24.37 16 14 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 15 C 0.03 1.54 5.39 84.65 0.46 1.99 16 16 N -0.91 -49.89 12.93 21.45 0.28 -49.61 16 17 Si 0.94 41.55 29.55 68.60 2.03 43.58 16 18 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 19 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 20 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 21 C -0.19 -8.25 9.88 30.60 0.30 -7.95 16 22 C -0.17 -8.19 9.46 30.59 0.29 -7.90 16 23 C -0.18 -4.96 9.48 22.37 0.21 -4.75 16 24 C 0.12 3.41 11.18 84.63 0.95 4.36 16 25 N -0.56 -16.88 9.22 -308.94 -2.85 -19.72 16 26 H 0.06 1.11 8.10 -2.39 -0.02 1.09 16 27 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 28 H 0.12 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.10 1.80 8.10 -2.39 -0.02 1.78 16 31 H 0.08 1.91 8.10 -2.39 -0.02 1.89 16 32 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.03 1.09 7.56 -2.39 -0.02 1.08 16 34 H 0.06 1.53 8.13 -2.39 -0.02 1.52 16 35 H 0.34 13.74 7.45 -89.70 -0.67 13.07 16 36 H 0.00 0.09 7.57 -2.39 -0.02 0.07 16 37 H 0.04 1.52 7.73 -2.38 -0.02 1.50 16 38 H 0.26 13.66 8.32 -92.71 -0.77 12.89 16 39 H 0.08 3.08 8.08 -2.39 -0.02 3.06 16 40 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.06 2.90 8.14 -2.38 -0.02 2.88 16 42 H 0.07 2.97 8.14 -2.38 -0.02 2.95 16 43 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 44 H 0.17 3.96 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -58.96 366.23 1.79 -57.17 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.30 Total: 32.55 kcal Atomic # 6 Polarization: -33.11 SS G_CDS: 5.65 Total: -27.46 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -5.24 Total: -96.16 kcal Atomic # 8 Polarization: -8.73 SS G_CDS: -0.94 Total: -9.67 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -58.96 1.79 -57.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602641642.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.550 kcal (2) G-P(sol) polarization free energy of solvation -58.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.54 seconds