Wall clock time and date at job start Tue Mar 31 2020 08:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46882 * 2 1 4 4 C 1.52995 * 109.47114 * 119.99883 * 2 1 3 5 5 C 1.50704 * 109.47087 * 295.00327 * 4 2 1 6 6 H 1.07998 * 119.99855 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99621 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99341 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00258 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47329 * 90.00275 * 9 7 5 11 11 H 1.48507 * 109.46757 * 210.00528 * 9 7 5 12 12 H 1.48501 * 109.47109 * 329.99728 * 9 7 5 13 13 C 1.52995 * 109.46957 * 240.00040 * 2 1 3 14 14 N 1.46904 * 109.47561 * 64.99969 * 13 2 1 15 15 C 1.46896 * 111.00278 * 174.69460 * 14 13 2 16 16 H 1.09006 * 109.46706 * 38.90573 * 15 14 13 17 17 C 1.52990 * 109.47384 * 278.90778 * 15 14 13 18 18 C 1.50704 * 109.47377 * 173.20599 * 17 15 14 19 19 N 1.34778 * 120.00148 * 173.52086 * 18 17 15 20 20 O 1.21290 * 119.99757 * 353.52017 * 18 17 15 21 21 C 1.50697 * 109.47075 * 158.90237 * 15 14 13 22 22 C 1.38237 * 119.99632 * 39.73146 * 21 15 14 23 23 C 1.38237 * 119.99635 * 179.78405 * 22 21 15 24 24 C 1.38236 * 120.00333 * 0.44623 * 23 22 21 25 25 C 1.38231 * 119.99586 * 359.80561 * 24 23 22 26 26 C 1.38238 * 120.00601 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47002 * 300.00398 * 1 2 3 28 28 H 1.08995 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46761 * 59.99940 * 1 2 3 30 30 H 1.09004 * 109.46954 * 55.00003 * 4 2 1 31 31 H 1.08998 * 109.47403 * 174.99953 * 4 2 1 32 32 H 0.97001 * 119.99774 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47345 * 185.00075 * 13 2 1 34 34 H 1.09003 * 109.47406 * 304.99912 * 13 2 1 35 35 H 1.00893 * 110.99786 * 298.65462 * 14 13 2 36 36 H 1.09003 * 109.47457 * 293.20125 * 17 15 14 37 37 H 1.08998 * 109.47377 * 53.20640 * 17 15 14 38 38 H 0.96990 * 120.00208 * 0.02562 * 19 18 17 39 39 H 0.97001 * 119.99733 * 179.97438 * 19 18 17 40 40 H 1.07997 * 120.00370 * 359.97438 * 22 21 15 41 41 H 1.08005 * 119.99946 * 180.27238 * 23 22 21 42 42 H 1.08001 * 120.00007 * 179.83389 * 24 23 22 43 43 H 1.08001 * 120.00262 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.00557 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9932 -0.4017 3.7283 8 7 1.6457 0.2778 4.7993 9 14 2.9636 -1.9882 3.9028 10 1 4.4171 -1.6848 3.8780 11 1 2.6162 -2.6419 5.1902 12 1 2.6289 -2.8994 2.7789 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.2310 -0.5573 -3.6574 16 1 2.1996 -1.6441 -3.5795 17 6 3.6828 -0.0985 -3.8065 18 6 4.3277 -0.8359 -4.9517 19 7 5.5694 -0.5012 -5.3548 20 8 3.7292 -1.7307 -5.5105 21 6 1.4388 -0.1169 -4.8614 22 6 0.9772 1.1833 -4.9472 23 6 0.2543 1.5884 -6.0536 24 6 -0.0149 0.6909 -7.0700 25 6 0.4422 -0.6106 -6.9817 26 6 1.1690 -1.0147 -5.8774 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2056 32 1 1.8929 -0.0451 5.6799 33 1 3.1264 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2952 35 1 0.6475 0.1051 -2.5206 36 1 3.7067 0.9731 -4.0051 37 1 4.2270 -0.3096 -2.8860 38 1 6.0482 0.2141 -4.9077 39 1 5.9846 -0.9762 -6.0917 40 1 1.1839 1.8833 -4.1513 41 1 -0.1026 2.6055 -6.1228 42 1 -0.5820 1.0068 -7.9332 43 1 0.2323 -1.3118 -7.7759 44 1 1.5258 -2.0316 -5.8082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602673979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:05 Heat of formation + Delta-G solvation = -32.039678 kcal Electronic energy + Delta-G solvation = -22958.418327 eV Core-core repulsion = 19681.591684 eV Total energy + Delta-G solvation = -3276.826643 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -40.21003 -38.84463 -37.10266 -34.73478 -33.82597 -32.37137 -30.91103 -30.65132 -29.53749 -27.39075 -25.73833 -23.73484 -22.60566 -21.73259 -21.44854 -19.86829 -19.03015 -17.68664 -17.01242 -16.94469 -16.62597 -15.64778 -15.35786 -15.07041 -14.80500 -14.26735 -13.93613 -13.80715 -13.72192 -13.26515 -13.16928 -12.76400 -12.60412 -12.48092 -12.21337 -11.98308 -11.78100 -11.58151 -10.99842 -10.98347 -10.79767 -10.63455 -10.38690 -10.05600 -9.88830 -9.86998 -9.65723 -9.46023 -9.05714 -8.86123 -8.70946 -8.50860 -8.27699 -6.01236 -3.98038 1.33578 1.45458 2.53392 3.31560 3.33266 3.39449 3.43085 3.79381 4.32899 4.47496 4.62638 4.78718 4.95943 4.99910 5.13686 5.17180 5.32417 5.35483 5.51517 5.57789 5.62160 5.65515 5.69360 5.86380 5.97745 6.00750 6.11320 6.18000 6.36699 6.47111 6.48130 6.51891 6.59270 6.66114 6.81478 6.98695 7.03182 7.08230 7.12699 7.23366 7.30725 7.47999 7.58785 7.83787 8.11635 8.58351 9.04754 9.61816 11.12239 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.003547 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.640288 B = 7892.151389 C = 8821.244452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.073 4.073 3 H 0.071 0.929 4 C -0.009 4.009 5 C -0.512 4.512 6 H 0.074 0.926 7 C 0.065 3.935 8 N -0.905 5.905 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.060 3.940 14 N -0.683 5.683 15 C 0.141 3.859 16 H 0.059 0.941 17 C -0.130 4.130 18 C 0.518 3.482 19 N -0.860 5.860 20 O -0.540 6.540 21 C -0.091 4.091 22 C -0.101 4.101 23 C -0.132 4.132 24 C -0.122 4.122 25 C -0.132 4.132 26 C -0.084 4.084 27 H 0.067 0.933 28 H 0.040 0.960 29 H 0.035 0.965 30 H 0.014 0.986 31 H 0.010 0.990 32 H 0.262 0.738 33 H 0.066 0.934 34 H 0.026 0.974 35 H 0.347 0.653 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.401 0.599 39 H 0.398 0.602 40 H 0.131 0.869 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.506 0.493 -24.069 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.092 4.092 3 H 0.090 0.910 4 C -0.047 4.047 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.136 4.136 8 N -0.545 5.545 9 Si 0.705 3.295 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C -0.069 4.069 14 N -0.315 5.315 15 C 0.031 3.969 16 H 0.077 0.923 17 C -0.171 4.171 18 C 0.303 3.697 19 N -0.423 5.423 20 O -0.417 6.417 21 C -0.091 4.091 22 C -0.119 4.119 23 C -0.150 4.150 24 C -0.140 4.140 25 C -0.150 4.150 26 C -0.103 4.103 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.032 0.968 31 H 0.028 0.972 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.044 0.956 35 H 0.167 0.833 36 H 0.118 0.882 37 H 0.120 0.880 38 H 0.229 0.771 39 H 0.229 0.771 40 H 0.149 0.851 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 3.459 0.401 -24.018 24.269 hybrid contribution 0.529 -1.415 0.059 1.512 sum 3.988 -1.014 -23.959 24.310 Atomic orbital electron populations 1.21740 0.96181 1.00526 1.00845 1.21005 0.95307 1.00086 0.92766 0.91008 1.19609 0.95513 0.96090 0.93477 1.21136 1.35303 1.09482 0.89083 0.90807 1.25031 0.95728 0.96864 0.95981 1.69917 1.47267 1.39283 0.98008 0.86813 0.80622 0.84566 0.77464 1.20404 1.21516 1.19108 1.22240 1.00179 0.94659 0.89827 1.60538 1.16303 1.53680 1.00989 1.20057 0.91545 0.97376 0.87919 0.92290 1.21656 0.96420 1.01686 0.97299 1.20759 0.81197 0.83237 0.84462 1.43905 1.18062 1.41088 1.39273 1.90701 1.62651 1.31276 1.57063 1.19851 0.99061 0.94086 0.96108 1.21135 0.97153 0.95790 0.97830 1.21126 0.99852 0.99510 0.94487 1.21130 1.00207 0.93896 0.98814 1.21119 0.99295 0.96204 0.98420 1.21224 0.95793 1.00222 0.93022 0.91405 0.94120 0.94606 0.96813 0.97204 0.92850 0.91555 0.95552 0.83303 0.88233 0.88000 0.77056 0.77146 0.85075 0.86343 0.86643 0.86565 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.77 37.16 0.33 -2.13 16 2 C -0.07 -1.38 2.55 -90.62 -0.23 -1.61 16 3 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 4 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16 5 C -0.51 -14.29 8.96 -34.44 -0.31 -14.60 16 6 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 7 C 0.06 1.87 5.47 -17.82 -0.10 1.77 16 8 N -0.91 -27.84 13.96 55.43 0.77 -27.07 16 9 Si 0.88 21.70 27.47 -169.99 -4.67 17.03 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.06 0.93 4.93 -3.82 -0.02 0.91 16 14 N -0.68 -9.09 5.59 -107.96 -0.60 -9.69 16 15 C 0.14 1.75 1.99 -68.87 -0.14 1.61 16 16 H 0.06 0.82 7.43 -51.93 -0.39 0.44 16 17 C -0.13 -1.36 5.37 -27.89 -0.15 -1.51 16 18 C 0.52 5.62 7.79 -10.98 -0.09 5.53 16 19 N -0.86 -6.05 8.87 31.22 0.28 -5.77 16 20 O -0.54 -7.62 13.69 5.55 0.08 -7.54 16 21 C -0.09 -1.11 4.28 -104.62 -0.45 -1.56 16 22 C -0.10 -1.15 9.08 -39.58 -0.36 -1.51 16 23 C -0.13 -1.39 10.05 -39.58 -0.40 -1.78 16 24 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 25 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 26 C -0.08 -1.06 8.16 -39.58 -0.32 -1.39 16 27 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.03 0.55 6.80 -51.93 -0.35 0.19 16 30 H 0.01 0.32 7.20 -51.93 -0.37 -0.05 16 31 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 32 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 33 H 0.07 1.01 6.98 -51.93 -0.36 0.65 16 34 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.35 4.64 6.58 -39.30 -0.26 4.38 16 36 H 0.10 0.94 8.12 -51.93 -0.42 0.52 16 37 H 0.10 1.04 7.00 -51.93 -0.36 0.67 16 38 H 0.40 1.77 8.83 -40.82 -0.36 1.41 16 39 H 0.40 2.43 8.93 -40.82 -0.36 2.06 16 40 H 0.13 1.45 7.71 -52.49 -0.40 1.04 16 41 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 44 H 0.13 1.72 6.85 -52.49 -0.36 1.36 16 LS Contribution 352.50 15.07 5.31 5.31 Total: -1.00 -32.42 352.50 -8.81 -41.23 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -6.85 Total: 6.62 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -3.12 Total: -20.13 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: 0.45 Total: -42.53 kcal Atomic # 8 Polarization: -7.62 SS G_CDS: 0.08 Total: -7.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.42 -8.81 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602673979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.189 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds