Wall clock time and date at job start Tue Mar 31 2020 08:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46882 * 2 1 4 4 C 1.52995 * 109.47114 * 119.99883 * 2 1 3 5 5 C 1.50704 * 109.47087 * 295.00327 * 4 2 1 6 6 H 1.07998 * 119.99855 * 359.97438 * 5 4 2 7 7 C 1.37881 * 119.99621 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99341 * 179.97438 * 7 5 4 9 9 Si 1.86796 * 120.00258 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47329 * 90.00275 * 9 7 5 11 11 H 1.48507 * 109.46757 * 210.00528 * 9 7 5 12 12 H 1.48501 * 109.47109 * 329.99728 * 9 7 5 13 13 C 1.52995 * 109.46957 * 240.00040 * 2 1 3 14 14 N 1.46904 * 109.47561 * 64.99969 * 13 2 1 15 15 C 1.46896 * 111.00278 * 174.69460 * 14 13 2 16 16 H 1.09006 * 109.46706 * 38.90573 * 15 14 13 17 17 C 1.52990 * 109.47384 * 278.90778 * 15 14 13 18 18 C 1.50704 * 109.47377 * 173.20599 * 17 15 14 19 19 N 1.34778 * 120.00148 * 173.52086 * 18 17 15 20 20 O 1.21290 * 119.99757 * 353.52017 * 18 17 15 21 21 C 1.50697 * 109.47075 * 158.90237 * 15 14 13 22 22 C 1.38237 * 119.99632 * 39.73146 * 21 15 14 23 23 C 1.38237 * 119.99635 * 179.78405 * 22 21 15 24 24 C 1.38236 * 120.00333 * 0.44623 * 23 22 21 25 25 C 1.38231 * 119.99586 * 359.80561 * 24 23 22 26 26 C 1.38238 * 120.00601 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47002 * 300.00398 * 1 2 3 28 28 H 1.08995 * 109.46809 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46761 * 59.99940 * 1 2 3 30 30 H 1.09004 * 109.46954 * 55.00003 * 4 2 1 31 31 H 1.08998 * 109.47403 * 174.99953 * 4 2 1 32 32 H 0.97001 * 119.99774 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47345 * 185.00075 * 13 2 1 34 34 H 1.09003 * 109.47406 * 304.99912 * 13 2 1 35 35 H 1.00893 * 110.99786 * 298.65462 * 14 13 2 36 36 H 1.09003 * 109.47457 * 293.20125 * 17 15 14 37 37 H 1.08998 * 109.47377 * 53.20640 * 17 15 14 38 38 H 0.96990 * 120.00208 * 0.02562 * 19 18 17 39 39 H 0.97001 * 119.99733 * 179.97438 * 19 18 17 40 40 H 1.07997 * 120.00370 * 359.97438 * 22 21 15 41 41 H 1.08005 * 119.99946 * 180.27238 * 23 22 21 42 42 H 1.08001 * 120.00007 * 179.83389 * 24 23 22 43 43 H 1.08001 * 120.00262 * 180.02562 * 25 24 23 44 44 H 1.07997 * 120.00557 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0806 0.9746 2.3756 7 6 1.9932 -0.4017 3.7283 8 7 1.6457 0.2778 4.7993 9 14 2.9636 -1.9882 3.9028 10 1 4.4171 -1.6848 3.8780 11 1 2.6162 -2.6419 5.1902 12 1 2.6289 -2.8994 2.7789 13 6 2.0400 -0.7212 -1.2492 14 7 1.6514 0.0374 -2.4457 15 6 2.2310 -0.5573 -3.6574 16 1 2.1996 -1.6441 -3.5795 17 6 3.6828 -0.0985 -3.8065 18 6 4.3277 -0.8359 -4.9517 19 7 5.5694 -0.5012 -5.3548 20 8 3.7292 -1.7307 -5.5105 21 6 1.4388 -0.1169 -4.8614 22 6 0.9772 1.1833 -4.9472 23 6 0.2543 1.5884 -6.0536 24 6 -0.0149 0.6909 -7.0700 25 6 0.4422 -0.6106 -6.9817 26 6 1.1690 -1.0147 -5.8774 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.6054 -1.7198 1.2951 31 1 3.1263 -0.7995 1.2056 32 1 1.8929 -0.0451 5.6799 33 1 3.1264 -0.7995 -1.2056 34 1 1.6054 -1.7198 -1.2952 35 1 0.6475 0.1051 -2.5206 36 1 3.7067 0.9731 -4.0051 37 1 4.2270 -0.3096 -2.8860 38 1 6.0482 0.2141 -4.9077 39 1 5.9846 -0.9762 -6.0917 40 1 1.1839 1.8833 -4.1513 41 1 -0.1026 2.6055 -6.1228 42 1 -0.5820 1.0068 -7.9332 43 1 0.2323 -1.3118 -7.7759 44 1 1.5258 -2.0316 -5.8082 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602673979.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:04 Heat of formation + Delta-G solvation = -54.643535 kcal Electronic energy + Delta-G solvation = -22959.398504 eV Core-core repulsion = 19681.591684 eV Total energy + Delta-G solvation = -3277.806820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.08696 -39.68607 -38.37360 -36.12727 -34.57883 -34.32000 -32.02025 -31.64589 -30.42228 -29.18405 -27.06248 -24.96853 -23.75072 -23.04548 -22.29709 -20.77365 -20.57366 -18.96645 -18.42225 -17.75823 -17.68137 -16.65339 -16.39499 -16.29896 -15.88137 -15.72194 -15.26908 -15.06313 -14.79672 -14.52502 -14.20453 -14.09239 -13.81968 -13.68151 -13.48066 -13.40066 -12.99448 -12.80306 -12.72897 -12.34569 -12.06538 -11.84002 -11.73348 -11.67429 -11.38508 -11.16697 -11.03060 -10.89942 -10.70910 -10.57895 -9.71313 -9.57402 -9.39245 -8.23744 -6.25483 0.49017 0.59897 1.36930 1.39191 1.50476 1.71950 2.39440 2.58339 2.93978 3.11800 3.31501 3.74044 3.96933 4.09944 4.21201 4.21942 4.26515 4.34178 4.38675 4.44799 4.51929 4.67234 4.74840 4.78324 4.83469 4.86252 4.97176 5.05210 5.09474 5.18233 5.26924 5.34405 5.40278 5.57154 5.63047 5.69665 5.73448 5.76491 5.78216 5.96757 6.11846 6.20466 6.37306 6.44070 6.51962 6.82522 7.37980 7.41398 8.93045 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019337 B = 0.003547 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.640288 B = 7892.151389 C = 8821.244452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.067 4.067 3 H 0.060 0.940 4 C -0.007 4.007 5 C -0.516 4.516 6 H 0.036 0.964 7 C 0.001 3.999 8 N -0.954 5.954 9 Si 0.946 3.054 10 H -0.266 1.266 11 H -0.288 1.288 12 H -0.249 1.249 13 C 0.072 3.928 14 N -0.674 5.674 15 C 0.145 3.855 16 H 0.041 0.959 17 C -0.127 4.127 18 C 0.515 3.485 19 N -0.841 5.841 20 O -0.578 6.578 21 C -0.098 4.098 22 C -0.107 4.107 23 C -0.134 4.134 24 C -0.124 4.124 25 C -0.140 4.140 26 C -0.101 4.101 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.065 0.935 30 H 0.014 0.986 31 H 0.018 0.982 32 H 0.264 0.736 33 H 0.074 0.926 34 H 0.025 0.975 35 H 0.347 0.653 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.416 0.584 39 H 0.405 0.595 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.442 0.189 -26.118 26.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.085 4.085 3 H 0.079 0.921 4 C -0.045 4.045 5 C -0.554 4.554 6 H 0.054 0.946 7 C -0.195 4.195 8 N -0.596 5.596 9 Si 0.770 3.230 10 H -0.191 1.191 11 H -0.214 1.214 12 H -0.173 1.173 13 C -0.057 4.057 14 N -0.306 5.306 15 C 0.035 3.965 16 H 0.059 0.941 17 C -0.167 4.167 18 C 0.300 3.700 19 N -0.405 5.405 20 O -0.458 6.458 21 C -0.098 4.098 22 C -0.126 4.126 23 C -0.151 4.151 24 C -0.141 4.141 25 C -0.158 4.158 26 C -0.119 4.119 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.032 0.968 31 H 0.036 0.964 32 H 0.072 0.928 33 H 0.093 0.907 34 H 0.043 0.957 35 H 0.167 0.833 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.247 0.753 39 H 0.237 0.763 40 H 0.153 0.847 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.433 0.124 -26.092 26.466 hybrid contribution 0.195 -1.217 0.646 1.391 sum 4.627 -1.093 -25.447 25.887 Atomic orbital electron populations 1.21663 0.95716 1.00670 1.00679 1.20851 0.95688 0.99300 0.92708 0.92104 1.19572 0.95947 0.95662 0.93340 1.21463 1.34160 1.08583 0.91171 0.94561 1.25981 0.97123 1.00783 0.95602 1.70075 1.49253 1.41579 0.98695 0.85718 0.79351 0.80067 0.77845 1.19123 1.21428 1.17277 1.21985 1.00502 0.94134 0.89096 1.60503 1.16396 1.53079 1.00660 1.20000 0.92766 0.96260 0.87453 0.94122 1.21623 0.95180 1.02355 0.97541 1.20828 0.81982 0.82829 0.84365 1.43735 1.16863 1.40958 1.38958 1.90698 1.63835 1.32943 1.58298 1.19825 0.99517 0.94517 0.95968 1.21224 0.97484 0.95403 0.98450 1.21435 0.99108 1.00621 0.93976 1.21443 0.99807 0.93347 0.99553 1.21353 0.98968 0.97146 0.98339 1.21203 0.96871 0.99764 0.94089 0.94647 0.93780 0.91664 0.96803 0.96410 0.92754 0.90738 0.95662 0.83281 0.86880 0.87446 0.75304 0.76339 0.84725 0.84183 0.84179 0.85220 0.86893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.77 71.98 0.63 -4.02 16 2 C -0.07 -2.47 2.55 -10.79 -0.03 -2.50 16 3 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 4 C -0.01 -0.33 3.52 29.85 0.10 -0.23 16 5 C -0.52 -29.33 8.96 25.60 0.23 -29.10 16 6 H 0.04 2.27 7.30 -2.91 -0.02 2.25 16 7 C 0.00 0.06 5.47 84.66 0.46 0.53 16 8 N -0.95 -60.16 13.96 21.45 0.30 -59.86 16 9 Si 0.95 44.43 27.47 68.60 1.88 46.31 16 10 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 12 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 13 C 0.07 2.12 4.93 86.30 0.43 2.55 16 14 N -0.67 -16.87 5.59 -495.46 -2.77 -19.64 16 15 C 0.15 3.44 1.99 44.17 0.09 3.53 16 16 H 0.04 1.13 7.43 -2.38 -0.02 1.11 16 17 C -0.13 -2.44 5.37 29.85 0.16 -2.28 16 18 C 0.51 10.47 7.79 87.66 0.68 11.15 16 19 N -0.84 -10.15 8.87 -173.52 -1.54 -11.69 16 20 O -0.58 -16.09 13.69 -3.06 -0.04 -16.13 16 21 C -0.10 -2.30 4.28 -19.87 -0.09 -2.38 16 22 C -0.11 -2.26 9.08 22.27 0.20 -2.06 16 23 C -0.13 -2.48 10.05 22.27 0.22 -2.25 16 24 C -0.12 -2.26 10.05 22.27 0.22 -2.04 16 25 C -0.14 -2.96 10.05 22.27 0.22 -2.73 16 26 C -0.10 -2.50 8.16 22.27 0.18 -2.32 16 27 H 0.03 1.47 6.95 -2.39 -0.02 1.46 16 28 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.92 6.80 -2.39 -0.02 1.91 16 30 H 0.01 0.63 7.20 -2.38 -0.02 0.61 16 31 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 32 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 33 H 0.07 2.10 6.98 -2.38 -0.02 2.08 16 34 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.35 8.70 6.58 -89.70 -0.59 8.11 16 36 H 0.11 1.87 8.12 -2.39 -0.02 1.85 16 37 H 0.11 1.95 7.00 -2.39 -0.02 1.93 16 38 H 0.42 2.60 8.83 -92.72 -0.82 1.78 16 39 H 0.41 4.18 8.93 -92.71 -0.83 3.35 16 40 H 0.13 2.69 7.71 -2.91 -0.02 2.67 16 41 H 0.14 1.94 8.06 -2.91 -0.02 1.92 16 42 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 43 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 44 H 0.11 3.11 6.85 -2.91 -0.02 3.09 16 Total: -1.00 -71.31 352.50 0.29 -71.02 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -1.27 Total: 24.15 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 3.73 Total: -34.16 kcal Atomic # 7 Polarization: -87.18 SS G_CDS: -4.01 Total: -91.19 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.04 Total: -16.13 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.88 Total: 46.31 kcal Total: -71.31 0.29 -71.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602673979.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.373 kcal (2) G-P(sol) polarization free energy of solvation -71.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds