Wall clock time and date at job start Tue Mar 31 2020 08:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47331 * 2 1 4 4 C 1.53002 * 109.46870 * 119.99673 * 2 1 3 5 5 C 1.50702 * 109.47165 * 294.99951 * 4 2 1 6 6 H 1.08007 * 119.99597 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00346 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99660 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00153 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46905 * 60.00246 * 9 7 5 11 11 H 1.48497 * 109.47097 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47441 * 300.00448 * 9 7 5 13 13 C 1.52999 * 109.46962 * 239.99413 * 2 1 3 14 14 N 1.46892 * 109.47158 * 65.00661 * 13 2 1 15 15 C 1.46899 * 110.99975 * 173.45682 * 14 13 2 16 16 H 1.08997 * 109.47376 * 323.83561 * 15 14 13 17 17 C 1.53003 * 109.47440 * 83.83864 * 15 14 13 18 18 C 1.50694 * 109.47560 * 186.57905 * 17 15 14 19 19 N 1.34774 * 119.99991 * 186.97893 * 18 17 15 20 20 O 1.21277 * 120.00044 * 6.97081 * 18 17 15 21 21 C 1.50706 * 109.47393 * 203.83593 * 15 14 13 22 22 C 1.38230 * 119.99471 * 319.72774 * 21 15 14 23 23 C 1.38242 * 119.99504 * 179.81017 * 22 21 15 24 24 C 1.38236 * 120.00029 * 0.39339 * 23 22 21 25 25 C 1.38233 * 119.99764 * 359.86181 * 24 23 22 26 26 C 1.38235 * 119.99778 * 140.00087 * 21 15 14 27 27 H 1.08994 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46877 * 60.00464 * 1 2 3 29 29 H 1.09001 * 109.47118 * 300.00975 * 1 2 3 30 30 H 1.08998 * 109.47040 * 54.99330 * 4 2 1 31 31 H 1.08989 * 109.47359 * 174.99781 * 4 2 1 32 32 H 0.97005 * 119.99674 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46962 * 185.00533 * 13 2 1 34 34 H 1.08998 * 109.47085 * 305.00052 * 13 2 1 35 35 H 1.00904 * 110.99717 * 297.40617 * 14 13 2 36 36 H 1.09009 * 109.46577 * 306.57648 * 17 15 14 37 37 H 1.09000 * 109.47488 * 66.57345 * 17 15 14 38 38 H 0.96999 * 120.00525 * 359.97438 * 19 18 17 39 39 H 0.97008 * 119.99754 * 180.02562 * 19 18 17 40 40 H 1.08002 * 120.00773 * 359.97438 * 22 21 15 41 41 H 1.08004 * 119.99959 * 180.23321 * 23 22 21 42 42 H 1.08000 * 119.99856 * 179.83438 * 24 23 22 43 43 H 1.08006 * 119.99783 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00386 * 359.97438 * 26 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9748 2.3755 7 6 1.9922 -0.4020 3.7284 8 7 2.6753 -1.5190 3.8514 9 14 1.4986 0.5632 5.2496 10 1 0.0187 0.6709 5.3089 11 1 1.9934 -0.1368 6.4622 12 1 2.0917 1.9232 5.1871 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.2549 -0.5403 -3.6540 16 1 3.2539 -0.9086 -3.4209 17 6 1.3882 -1.6980 -4.1536 18 6 2.0865 -2.3926 -5.2941 19 7 1.4493 -3.3569 -5.9873 20 8 3.2218 -2.0838 -5.5882 21 6 2.3464 0.5168 -4.7242 22 6 1.3072 1.4105 -4.9034 23 6 1.3928 2.3827 -5.8825 24 6 2.5141 2.4559 -6.6877 25 6 3.5510 1.5588 -6.5119 26 6 3.4671 0.5890 -5.5303 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5140 0.8899 30 1 1.6052 -1.7197 1.2953 31 1 3.1262 -0.7995 1.2057 32 1 2.9225 -1.8419 4.7321 33 1 3.1263 -0.7997 -1.2055 34 1 1.6054 -1.7199 -1.2950 35 1 0.6474 0.0876 -2.5315 36 1 1.2255 -2.4067 -3.3415 37 1 0.4284 -1.3117 -4.4965 38 1 0.5414 -3.6041 -5.7519 39 1 1.8990 -3.8043 -6.7212 40 1 0.4296 1.3511 -4.2768 41 1 0.5825 3.0834 -6.0201 42 1 2.5798 3.2137 -7.4544 43 1 4.4268 1.6157 -7.1413 44 1 4.2772 -0.1118 -5.3929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602673980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:11 Heat of formation + Delta-G solvation = -34.874837 kcal Electronic energy + Delta-G solvation = -22895.165640 eV Core-core repulsion = 19618.216055 eV Total energy + Delta-G solvation = -3276.949585 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.20923 -38.76773 -37.07606 -34.68513 -33.85142 -32.38662 -30.80891 -30.51565 -29.36506 -26.84738 -25.58663 -23.91994 -22.66437 -21.94138 -21.28740 -20.09465 -18.99892 -17.62013 -17.01804 -16.89520 -16.30579 -15.63690 -15.07877 -15.01217 -14.80681 -14.48570 -14.03166 -13.73508 -13.71016 -13.14787 -12.97649 -12.86179 -12.54459 -12.22703 -12.16009 -11.79772 -11.56833 -11.36943 -10.94740 -10.87547 -10.75831 -10.73581 -10.33335 -10.20595 -10.08680 -9.88858 -9.70533 -9.15241 -8.97908 -8.75116 -8.59286 -8.31382 -8.19866 -5.96214 -3.97307 1.47350 1.56682 2.50375 3.32915 3.35579 3.40015 3.42601 3.88056 4.37201 4.50953 4.62128 4.81948 4.90896 5.04100 5.08299 5.17171 5.30666 5.39551 5.42999 5.61583 5.65621 5.76755 5.81546 5.86264 6.06766 6.11555 6.20510 6.24251 6.45359 6.53496 6.55415 6.58444 6.65321 6.78398 6.97436 7.09357 7.11323 7.14231 7.18526 7.34004 7.59342 7.71448 7.87389 8.04044 8.09257 8.47912 9.08888 9.66030 11.15286 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.003290 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.340273 B = 8509.679666 C = 9269.821221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.083 4.083 3 H 0.066 0.934 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.063 3.937 14 N -0.676 5.676 15 C 0.139 3.861 16 H 0.096 0.904 17 C -0.173 4.173 18 C 0.522 3.478 19 N -0.861 5.861 20 O -0.533 6.533 21 C -0.066 4.066 22 C -0.101 4.101 23 C -0.131 4.131 24 C -0.127 4.127 25 C -0.131 4.131 26 C -0.086 4.086 27 H 0.040 0.960 28 H 0.032 0.968 29 H 0.062 0.938 30 H 0.014 0.986 31 H 0.015 0.985 32 H 0.260 0.740 33 H 0.069 0.931 34 H 0.024 0.976 35 H 0.337 0.663 36 H 0.100 0.900 37 H 0.093 0.907 38 H 0.400 0.600 39 H 0.399 0.601 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.114 0.886 43 H 0.116 0.884 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.024 -0.268 -22.606 23.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.102 4.102 3 H 0.085 0.915 4 C -0.009 4.009 5 C -0.551 4.551 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.065 4.065 14 N -0.306 5.306 15 C 0.029 3.971 16 H 0.114 0.886 17 C -0.215 4.215 18 C 0.306 3.694 19 N -0.424 5.424 20 O -0.409 6.409 21 C -0.066 4.066 22 C -0.119 4.119 23 C -0.149 4.149 24 C -0.145 4.145 25 C -0.149 4.149 26 C -0.105 4.105 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.043 0.957 35 H 0.157 0.843 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.228 0.772 39 H 0.229 0.771 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.132 0.868 43 H 0.134 0.866 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.716 0.436 -22.394 22.705 hybrid contribution -1.144 -0.744 0.607 1.493 sum -4.860 -0.308 -21.787 22.325 Atomic orbital electron populations 1.21732 0.96702 1.00283 1.00308 1.21212 0.94836 1.00190 0.93929 0.91543 1.19106 0.96156 0.95307 0.90379 1.21203 1.34715 1.08241 0.90991 0.92617 1.25015 0.95335 0.95086 0.99083 1.69955 1.39034 1.21252 1.23464 0.86694 0.78826 0.80193 0.82499 1.20324 1.21402 1.20260 1.22221 1.00538 0.94308 0.89468 1.60702 1.14774 1.53932 1.01161 1.20287 0.98904 0.89230 0.88721 0.88560 1.22546 1.01202 1.00013 0.97722 1.20573 0.86545 0.79076 0.83167 1.43937 1.19523 1.41224 1.37746 1.90718 1.18324 1.63657 1.68238 1.19690 0.94349 0.96616 0.95992 1.20911 0.98737 0.95070 0.97203 1.21054 0.98242 0.98987 0.96635 1.21073 0.94358 0.99268 0.99778 1.21101 0.98761 0.96032 0.98968 1.21177 0.97904 0.96932 0.94445 0.94128 0.94947 0.91928 0.96810 0.96671 0.93057 0.91242 0.95730 0.84342 0.88143 0.88826 0.77219 0.77079 0.86377 0.86588 0.86778 0.86636 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 8.77 37.16 0.33 -2.04 16 2 C -0.08 -1.65 2.55 -90.62 -0.23 -1.88 16 3 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.30 8.41 -34.44 -0.29 -14.59 16 6 H 0.06 1.51 7.06 -52.48 -0.37 1.14 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 C 0.06 1.04 4.95 -3.83 -0.02 1.02 16 14 N -0.68 -9.40 5.66 -107.96 -0.61 -10.02 16 15 C 0.14 1.78 1.97 -68.86 -0.14 1.65 16 16 H 0.10 1.41 7.23 -51.93 -0.38 1.04 16 17 C -0.17 -1.71 5.15 -27.88 -0.14 -1.85 16 18 C 0.52 5.57 7.78 -10.99 -0.09 5.49 16 19 N -0.86 -5.86 8.87 31.22 0.28 -5.58 16 20 O -0.53 -7.57 13.70 5.56 0.08 -7.49 16 21 C -0.07 -0.86 4.51 -104.62 -0.47 -1.34 16 22 C -0.10 -1.22 9.30 -39.58 -0.37 -1.59 16 23 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 24 C -0.13 -1.42 10.05 -39.58 -0.40 -1.82 16 25 C -0.13 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.09 -1.17 8.16 -39.58 -0.32 -1.49 16 27 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.03 0.48 6.83 -51.93 -0.35 0.12 16 29 H 0.06 1.23 6.95 -51.93 -0.36 0.87 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.01 0.41 8.14 -51.94 -0.42 -0.01 16 32 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 33 H 0.07 1.23 7.89 -51.93 -0.41 0.82 16 34 H 0.02 0.39 7.42 -51.93 -0.39 0.00 16 35 H 0.34 4.18 6.29 -39.29 -0.25 3.93 16 36 H 0.10 0.94 7.36 -51.92 -0.38 0.56 16 37 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 38 H 0.40 1.60 8.83 -40.82 -0.36 1.24 16 39 H 0.40 2.38 8.93 -40.82 -0.36 2.02 16 40 H 0.12 1.28 7.22 -52.49 -0.38 0.90 16 41 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 42 H 0.11 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 44 H 0.13 1.83 6.85 -52.49 -0.36 1.47 16 LS Contribution 355.99 15.07 5.36 5.36 Total: -1.00 -32.66 355.99 -9.20 -41.86 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -6.87 Total: 5.63 kcal Atomic # 6 Polarization: -17.06 SS G_CDS: -3.16 Total: -20.22 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.40 Total: -41.83 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.08 Total: -7.49 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.66 -9.20 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602673980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.985 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds