Wall clock time and date at job start Tue Mar 31 2020 08:05:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47331 * 2 1 4 4 C 1.53002 * 109.46870 * 119.99673 * 2 1 3 5 5 C 1.50702 * 109.47165 * 294.99951 * 4 2 1 6 6 H 1.08007 * 119.99597 * 359.97438 * 5 4 2 7 7 C 1.37878 * 120.00346 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99660 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00153 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46905 * 60.00246 * 9 7 5 11 11 H 1.48497 * 109.47097 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47441 * 300.00448 * 9 7 5 13 13 C 1.52999 * 109.46962 * 239.99413 * 2 1 3 14 14 N 1.46892 * 109.47158 * 65.00661 * 13 2 1 15 15 C 1.46899 * 110.99975 * 173.45682 * 14 13 2 16 16 H 1.08997 * 109.47376 * 323.83561 * 15 14 13 17 17 C 1.53003 * 109.47440 * 83.83864 * 15 14 13 18 18 C 1.50694 * 109.47560 * 186.57905 * 17 15 14 19 19 N 1.34774 * 119.99991 * 186.97893 * 18 17 15 20 20 O 1.21277 * 120.00044 * 6.97081 * 18 17 15 21 21 C 1.50706 * 109.47393 * 203.83593 * 15 14 13 22 22 C 1.38230 * 119.99471 * 319.72774 * 21 15 14 23 23 C 1.38242 * 119.99504 * 179.81017 * 22 21 15 24 24 C 1.38236 * 120.00029 * 0.39339 * 23 22 21 25 25 C 1.38233 * 119.99764 * 359.86181 * 24 23 22 26 26 C 1.38235 * 119.99778 * 140.00087 * 21 15 14 27 27 H 1.08994 * 109.47331 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46877 * 60.00464 * 1 2 3 29 29 H 1.09001 * 109.47118 * 300.00975 * 1 2 3 30 30 H 1.08998 * 109.47040 * 54.99330 * 4 2 1 31 31 H 1.08989 * 109.47359 * 174.99781 * 4 2 1 32 32 H 0.97005 * 119.99674 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.46962 * 185.00533 * 13 2 1 34 34 H 1.08998 * 109.47085 * 305.00052 * 13 2 1 35 35 H 1.00904 * 110.99717 * 297.40617 * 14 13 2 36 36 H 1.09009 * 109.46577 * 306.57648 * 17 15 14 37 37 H 1.09000 * 109.47488 * 66.57345 * 17 15 14 38 38 H 0.96999 * 120.00525 * 359.97438 * 19 18 17 39 39 H 0.97008 * 119.99754 * 180.02562 * 19 18 17 40 40 H 1.08002 * 120.00773 * 359.97438 * 22 21 15 41 41 H 1.08004 * 119.99959 * 180.23321 * 23 22 21 42 42 H 1.08000 * 119.99856 * 179.83438 * 24 23 22 43 43 H 1.08006 * 119.99783 * 179.97438 * 25 24 23 44 44 H 1.07998 * 120.00386 * 359.97438 * 26 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6413 0.0572 2.4766 6 1 1.0806 0.9748 2.3755 7 6 1.9922 -0.4020 3.7284 8 7 2.6753 -1.5190 3.8514 9 14 1.4986 0.5632 5.2496 10 1 0.0187 0.6709 5.3089 11 1 1.9934 -0.1368 6.4622 12 1 2.0917 1.9232 5.1871 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0372 -2.4456 15 6 2.2549 -0.5403 -3.6540 16 1 3.2539 -0.9086 -3.4209 17 6 1.3882 -1.6980 -4.1536 18 6 2.0865 -2.3926 -5.2941 19 7 1.4493 -3.3569 -5.9873 20 8 3.2218 -2.0838 -5.5882 21 6 2.3464 0.5168 -4.7242 22 6 1.3072 1.4105 -4.9034 23 6 1.3928 2.3827 -5.8825 24 6 2.5141 2.4559 -6.6877 25 6 3.5510 1.5588 -6.5119 26 6 3.4671 0.5890 -5.5303 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 0.5140 0.8899 30 1 1.6052 -1.7197 1.2953 31 1 3.1262 -0.7995 1.2057 32 1 2.9225 -1.8419 4.7321 33 1 3.1263 -0.7997 -1.2055 34 1 1.6054 -1.7199 -1.2950 35 1 0.6474 0.0876 -2.5315 36 1 1.2255 -2.4067 -3.3415 37 1 0.4284 -1.3117 -4.4965 38 1 0.5414 -3.6041 -5.7519 39 1 1.8990 -3.8043 -6.7212 40 1 0.4296 1.3511 -4.2768 41 1 0.5825 3.0834 -6.0201 42 1 2.5798 3.2137 -7.4544 43 1 4.4268 1.6157 -7.1413 44 1 4.2772 -0.1118 -5.3929 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602673980.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:05:10 Heat of formation + Delta-G solvation = -57.337060 kcal Electronic energy + Delta-G solvation = -22896.139675 eV Core-core repulsion = 19618.216055 eV Total energy + Delta-G solvation = -3277.923620 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.11130 -39.64525 -38.38765 -36.17075 -34.60569 -34.29649 -31.90546 -31.58868 -30.28009 -28.71895 -26.97480 -25.22222 -24.06069 -23.11182 -22.15645 -21.01455 -20.60480 -18.56573 -18.32758 -17.82764 -17.72345 -16.64286 -16.53558 -16.18975 -15.92955 -15.71780 -15.20253 -14.92604 -14.84802 -14.36475 -14.22993 -14.07548 -13.83813 -13.53124 -13.32771 -13.20362 -13.07394 -12.74094 -12.59740 -12.48445 -12.19511 -12.02787 -11.73117 -11.67390 -11.46320 -11.05408 -10.98656 -10.87506 -10.59608 -10.50778 -9.66636 -9.55453 -9.31158 -8.15472 -6.24338 0.56576 0.64812 1.41379 1.44203 1.51689 1.69688 2.43556 2.60943 2.95664 3.18094 3.31779 3.76307 3.91014 4.06325 4.21006 4.23532 4.27450 4.33763 4.35829 4.47450 4.53052 4.61548 4.72821 4.76982 4.88141 4.91884 4.92175 5.08925 5.22816 5.27980 5.30603 5.43372 5.54691 5.58266 5.67154 5.73009 5.83255 5.86746 5.93035 5.95113 6.10434 6.25378 6.33846 6.48143 6.55588 6.91901 7.39867 7.43862 8.96376 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.019695 B = 0.003290 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.340273 B = 8509.679666 C = 9269.821221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.074 4.074 3 H 0.052 0.948 4 C 0.032 3.968 5 C -0.529 4.529 6 H 0.061 0.939 7 C -0.003 4.003 8 N -0.936 5.936 9 Si 0.960 3.040 10 H -0.265 1.265 11 H -0.286 1.286 12 H -0.270 1.270 13 C 0.077 3.923 14 N -0.674 5.674 15 C 0.144 3.856 16 H 0.068 0.932 17 C -0.166 4.166 18 C 0.516 3.484 19 N -0.841 5.841 20 O -0.576 6.576 21 C -0.077 4.077 22 C -0.108 4.108 23 C -0.133 4.133 24 C -0.129 4.129 25 C -0.141 4.141 26 C -0.107 4.107 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.042 0.958 30 H -0.007 1.007 31 H -0.018 1.018 32 H 0.261 0.739 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.351 0.649 36 H 0.109 0.891 37 H 0.121 0.879 38 H 0.416 0.584 39 H 0.405 0.595 40 H 0.133 0.867 41 H 0.142 0.858 42 H 0.139 0.861 43 H 0.128 0.872 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.493 0.877 -23.696 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.005 4.005 5 C -0.567 4.567 6 H 0.079 0.921 7 C -0.200 4.200 8 N -0.577 5.577 9 Si 0.785 3.215 10 H -0.190 1.190 11 H -0.211 1.211 12 H -0.195 1.195 13 C -0.052 4.052 14 N -0.305 5.305 15 C 0.033 3.967 16 H 0.086 0.914 17 C -0.207 4.207 18 C 0.301 3.699 19 N -0.405 5.405 20 O -0.455 6.455 21 C -0.077 4.077 22 C -0.126 4.126 23 C -0.151 4.151 24 C -0.147 4.147 25 C -0.159 4.159 26 C -0.126 4.126 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.011 0.989 31 H 0.000 1.000 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.171 0.829 36 H 0.127 0.873 37 H 0.139 0.861 38 H 0.247 0.753 39 H 0.236 0.764 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.157 0.843 43 H 0.146 0.854 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.237 1.563 -23.512 24.375 hybrid contribution -0.347 -1.119 0.871 1.460 sum -6.584 0.444 -22.640 23.582 Atomic orbital electron populations 1.21635 0.94465 1.00917 1.01178 1.20994 0.96600 0.98736 0.92928 0.92988 1.19007 0.93994 0.94744 0.92774 1.21630 1.34425 1.08522 0.92083 0.92076 1.25942 0.95301 0.96086 1.02633 1.70097 1.40332 1.23009 1.24269 0.85581 0.79046 0.78700 0.78219 1.18954 1.21140 1.19512 1.21873 0.99242 0.94671 0.89365 1.60542 1.15735 1.53709 1.00549 1.20125 0.98014 0.90350 0.88200 0.91417 1.22453 1.01472 0.99040 0.97777 1.20733 0.86132 0.79570 0.83493 1.43754 1.20107 1.39714 1.36945 1.90718 1.20149 1.65180 1.69492 1.19724 0.94766 0.97159 0.96091 1.21119 0.98819 0.94948 0.97762 1.21412 0.98863 0.98913 0.95902 1.21403 0.93847 0.99280 1.00196 1.21328 0.99802 0.95928 0.98800 1.21167 0.97988 0.97561 0.95843 0.93596 0.91133 0.93932 0.98858 1.00004 0.93003 0.93303 0.94652 0.82855 0.87338 0.86127 0.75293 0.76368 0.84876 0.84062 0.84282 0.85441 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.23 8.77 71.98 0.63 -3.60 16 2 C -0.07 -2.94 2.55 -10.79 -0.03 -2.97 16 3 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 4 C 0.03 1.70 4.45 29.85 0.13 1.83 16 5 C -0.53 -29.87 8.41 25.60 0.22 -29.66 16 6 H 0.06 3.31 7.06 -2.91 -0.02 3.29 16 7 C 0.00 -0.14 5.46 84.66 0.46 0.32 16 8 N -0.94 -57.52 13.29 21.45 0.28 -57.23 16 9 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 13 C 0.08 2.57 4.95 86.30 0.43 3.00 16 14 N -0.67 -17.95 5.66 -495.46 -2.81 -20.76 16 15 C 0.14 3.63 1.97 44.17 0.09 3.71 16 16 H 0.07 2.10 7.23 -2.39 -0.02 2.08 16 17 C -0.17 -3.02 5.15 29.85 0.15 -2.86 16 18 C 0.52 10.61 7.78 87.66 0.68 11.30 16 19 N -0.84 -9.98 8.87 -173.54 -1.54 -11.52 16 20 O -0.58 -16.77 13.70 -3.02 -0.04 -16.81 16 21 C -0.08 -1.97 4.51 -19.87 -0.09 -2.06 16 22 C -0.11 -2.38 9.30 22.27 0.21 -2.17 16 23 C -0.13 -2.64 10.05 22.27 0.22 -2.41 16 24 C -0.13 -2.62 10.05 22.27 0.22 -2.40 16 25 C -0.14 -3.32 10.05 22.27 0.22 -3.10 16 26 C -0.11 -2.96 8.16 22.27 0.18 -2.78 16 27 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.07 1.85 6.83 -2.38 -0.02 1.83 16 29 H 0.04 1.61 6.95 -2.39 -0.02 1.59 16 30 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 31 H -0.02 -1.07 8.14 -2.39 -0.02 -1.09 16 32 H 0.26 15.17 8.31 -92.70 -0.77 14.40 16 33 H 0.05 1.81 7.89 -2.39 -0.02 1.79 16 34 H 0.04 1.09 7.42 -2.39 -0.02 1.08 16 35 H 0.35 7.66 6.29 -89.69 -0.56 7.10 16 36 H 0.11 1.82 7.36 -2.38 -0.02 1.80 16 37 H 0.12 1.54 8.11 -2.39 -0.02 1.52 16 38 H 0.42 2.25 8.83 -92.71 -0.82 1.43 16 39 H 0.41 4.25 8.93 -92.70 -0.83 3.43 16 40 H 0.13 2.44 7.22 -2.91 -0.02 2.42 16 41 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 43 H 0.13 2.55 8.06 -2.91 -0.02 2.53 16 44 H 0.11 3.37 6.85 -2.91 -0.02 3.35 16 Total: -1.00 -72.95 355.99 0.47 -72.48 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -1.19 Total: 21.09 kcal Atomic # 6 Polarization: -37.58 SS G_CDS: 3.73 Total: -33.85 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -4.06 Total: -89.52 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: -0.04 Total: -16.81 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -72.95 0.47 -72.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602673980.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.143 kcal (2) G-P(sol) polarization free energy of solvation -72.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds