Wall clock time and date at job start Tue Mar 31 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.98600 * 2 1 4 4 O 1.43743 * 109.87675 * 238.92314 * 2 1 3 5 5 C 1.44391 * 106.97149 * 214.06159 * 4 2 1 6 6 C 1.54995 * 103.48883 * 40.05681 * 5 4 2 7 7 C 1.54096 * 109.87668 * 121.08829 * 2 1 3 8 8 H 1.09008 * 110.59521 * 240.18634 * 7 2 1 9 9 C 1.52993 * 110.49323 * 2.77575 * 7 2 1 10 10 N 1.46896 * 109.47709 * 185.40352 * 9 7 2 11 11 C 1.46901 * 110.99992 * 291.10607 * 10 9 7 12 12 C 1.50700 * 109.46631 * 302.16857 * 11 10 9 13 13 H 1.08002 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99851 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99586 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99876 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46996 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.47231 * 300.00072 * 16 14 12 19 19 H 1.48491 * 109.47214 * 60.00653 * 16 14 12 20 20 C 1.46906 * 110.99560 * 55.05347 * 10 9 7 21 21 C 1.50697 * 109.46998 * 71.42872 * 20 10 9 22 22 C 1.38229 * 119.61999 * 96.25968 * 21 20 10 23 23 C 1.38631 * 119.15980 * 179.97438 * 22 21 20 24 24 C 1.38667 * 118.42116 * 359.97438 * 23 22 21 25 25 C 1.38185 * 119.16820 * 359.97438 * 24 23 22 26 26 N 1.31852 * 119.61532 * 275.98087 * 21 20 10 27 27 H 1.08996 * 109.46991 * 298.91000 * 1 2 3 28 28 H 1.09005 * 109.47050 * 58.91366 * 1 2 3 29 29 H 1.08996 * 109.46952 * 178.91322 * 1 2 3 30 30 H 1.09005 * 110.61315 * 281.55977 * 5 4 2 31 31 H 1.08997 * 110.61658 * 158.56365 * 5 4 2 32 32 H 1.08995 * 110.90528 * 204.77799 * 6 5 4 33 33 H 1.09007 * 110.90574 * 81.17932 * 6 5 4 34 34 H 1.09002 * 109.46907 * 65.40546 * 9 7 2 35 35 H 1.08999 * 109.47494 * 305.40988 * 9 7 2 36 36 H 1.09003 * 109.46983 * 182.17625 * 11 10 9 37 37 H 1.08992 * 109.47347 * 62.17182 * 11 10 9 38 38 H 0.96999 * 119.99792 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.46975 * 191.42882 * 20 10 9 40 40 H 1.08996 * 109.47342 * 311.42639 * 20 10 9 41 41 H 1.07994 * 120.41739 * 359.94598 * 22 21 20 42 42 H 1.08000 * 120.78251 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.41892 * 179.97438 * 24 23 22 44 44 H 1.07991 * 119.62077 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1578 5 6 3.2380 -1.3641 -0.7648 6 6 2.9196 -1.8914 0.6574 7 6 2.0540 -0.7483 1.2410 8 1 2.6615 -0.0872 1.8593 9 6 0.8900 -1.3191 2.0533 10 7 1.4039 -1.9139 3.2943 11 6 2.1837 -3.1267 3.0132 12 6 1.3227 -4.1169 2.2722 13 1 0.2987 -3.8699 2.0336 14 6 1.8424 -5.3380 1.8980 15 7 3.0895 -5.6386 2.1882 16 14 0.7754 -6.5651 0.9789 17 1 1.5636 -7.7913 0.6948 18 1 -0.4034 -6.9168 1.8108 19 1 0.3176 -5.9634 -0.2991 20 6 2.1997 -0.9407 4.0542 21 6 1.2868 0.1026 4.6453 22 6 0.8518 -0.0307 5.9505 23 6 0.0127 0.9348 6.4848 24 6 -0.3588 2.0034 5.6828 25 6 0.1168 2.0702 4.3871 26 7 0.9168 1.1348 3.9131 27 1 -0.3633 0.4968 0.8996 28 1 -0.3633 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 4.0686 -0.6587 -0.7357 31 1 3.4586 -2.1906 -1.4403 32 1 3.8332 -2.0224 1.2372 33 1 2.3541 -2.8221 0.6097 34 1 0.3792 -2.0839 1.4682 35 1 0.1899 -0.5198 2.2963 36 1 2.5197 -3.5681 3.9515 37 1 3.0489 -2.8690 2.4025 38 1 3.4550 -6.4977 1.9253 39 1 2.7323 -1.4533 4.8553 40 1 2.9179 -0.4605 3.3896 41 1 1.1614 -0.8765 6.5464 42 1 -0.3433 0.8566 7.5014 43 1 -1.0116 2.7737 6.0660 44 1 -0.1674 2.8993 3.7563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602779812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:43 Heat of formation + Delta-G solvation = 8.689401 kcal Electronic energy + Delta-G solvation = -24477.446095 eV Core-core repulsion = 21202.385597 eV Total energy + Delta-G solvation = -3275.060498 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17712 -39.35705 -36.64097 -32.89350 -32.40942 -32.18838 -31.20490 -30.48449 -27.55015 -26.55039 -25.04627 -24.02167 -23.28518 -21.96456 -21.40044 -20.54904 -18.60520 -16.68015 -16.55816 -16.19884 -15.86347 -15.30630 -15.13421 -14.93506 -14.67286 -14.42921 -13.73287 -13.46318 -13.33232 -13.05364 -12.76294 -12.56238 -12.22529 -11.93718 -11.87599 -11.53666 -11.29121 -11.04129 -10.93472 -10.78728 -10.73231 -10.36185 -10.30193 -10.04242 -9.83897 -9.76518 -9.61210 -9.27560 -9.09737 -9.08185 -8.77420 -8.42079 -7.10565 -6.05404 -4.04982 1.29603 1.44863 3.33319 3.37266 3.40914 3.95208 4.39948 4.42443 4.52618 4.91259 4.95213 5.08490 5.20500 5.25150 5.31285 5.32466 5.39779 5.54483 5.67819 5.72178 5.74668 5.81985 5.88876 5.92576 5.99859 6.04532 6.18818 6.26838 6.29315 6.35977 6.37372 6.44182 6.59316 6.63913 6.67146 6.86425 7.01044 7.21447 7.30131 7.43100 7.52040 7.76612 8.05911 8.17999 8.26049 8.53655 9.01536 9.57831 11.04790 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.006150 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.455803 B = 4551.913948 C = 5808.152746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.086 3.914 3 H 0.055 0.945 4 O -0.382 6.382 5 C 0.043 3.957 6 C -0.151 4.151 7 C -0.145 4.145 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.528 5.528 11 C 0.174 3.826 12 C -0.504 4.504 13 H 0.061 0.939 14 C 0.060 3.940 15 N -0.895 5.895 16 Si 0.890 3.110 17 H -0.288 1.288 18 H -0.277 1.277 19 H -0.276 1.276 20 C 0.090 3.910 21 C 0.155 3.845 22 C -0.157 4.157 23 C -0.079 4.079 24 C -0.188 4.188 25 C 0.095 3.905 26 N -0.477 5.477 27 H 0.070 0.930 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.019 0.981 38 H 0.261 0.739 39 H 0.080 0.920 40 H 0.052 0.948 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.127 0.873 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.871 13.759 3.776 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.028 3.972 3 H 0.073 0.927 4 O -0.302 6.302 5 C -0.033 4.033 6 C -0.188 4.188 7 C -0.165 4.165 8 H 0.095 0.905 9 C -0.053 4.053 10 N -0.251 5.251 11 C 0.049 3.951 12 C -0.542 4.542 13 H 0.079 0.921 14 C -0.141 4.141 15 N -0.534 5.534 16 Si 0.718 3.282 17 H -0.214 1.214 18 H -0.203 1.203 19 H -0.201 1.201 20 C -0.039 4.039 21 C 0.017 3.983 22 C -0.177 4.177 23 C -0.105 4.105 24 C -0.208 4.208 25 C -0.062 4.062 26 N -0.186 5.186 27 H 0.089 0.911 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.135 0.865 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.043 0.957 37 H 0.037 0.963 38 H 0.071 0.929 39 H 0.098 0.902 40 H 0.070 0.930 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.145 0.855 44 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.923 13.505 2.998 14.139 hybrid contribution -0.014 -0.515 0.242 0.569 sum -2.937 12.990 3.240 13.706 Atomic orbital electron populations 1.21979 0.94414 1.02947 1.01291 1.22566 0.94793 0.94676 0.85196 0.92710 1.88802 1.40013 1.67827 1.33546 1.23600 0.86862 0.95464 0.97373 1.23622 1.00666 1.00900 0.93591 1.23120 0.99407 0.97262 0.96694 0.90469 1.22298 0.95175 0.98126 0.89725 1.62400 1.37969 1.05111 1.19610 1.20199 0.93105 0.85155 0.96631 1.21060 0.98248 0.99552 1.35383 0.92070 1.24914 0.94987 0.97986 0.96250 1.69937 1.13556 1.22900 1.46986 0.86674 0.80465 0.80632 0.80409 1.21389 1.20268 1.20131 1.21076 0.93014 0.91517 0.98287 1.21389 0.94418 0.92254 0.90221 1.21988 0.99007 0.99781 0.96914 1.21529 0.95655 0.93500 0.99802 1.22024 1.02770 0.99864 0.96114 1.22691 0.93421 0.96695 0.93411 1.67566 1.11732 1.01983 1.37356 0.91103 0.93203 0.91437 0.93637 0.89680 0.90908 0.86488 0.89546 0.91759 0.95709 0.96319 0.92896 0.90151 0.93026 0.84870 0.85350 0.85491 0.83362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.38 37.16 0.31 -2.02 16 2 C 0.09 1.46 4.05 -26.15 -0.11 1.36 16 3 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 4 O -0.38 -7.18 11.19 -35.23 -0.39 -7.57 16 5 C 0.04 0.76 7.72 38.21 0.29 1.06 16 6 C -0.15 -2.96 4.58 -24.72 -0.11 -3.07 16 7 C -0.14 -2.61 2.75 -89.10 -0.25 -2.85 16 8 H 0.08 1.38 5.74 -51.92 -0.30 1.09 16 9 C 0.07 1.45 3.31 -3.83 -0.01 1.43 16 10 N -0.53 -10.83 4.72 -237.52 -1.12 -11.95 16 11 C 0.17 4.17 4.14 -4.97 -0.02 4.15 16 12 C -0.50 -13.24 6.66 -34.44 -0.23 -13.47 16 13 H 0.06 1.63 6.57 -52.49 -0.34 1.29 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.89 -25.13 13.29 55.43 0.74 -24.39 16 16 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 17 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 C 0.09 1.58 5.08 -4.97 -0.03 1.55 16 21 C 0.16 2.46 5.88 -82.59 -0.49 1.98 16 22 C -0.16 -2.17 9.72 -39.44 -0.38 -2.55 16 23 C -0.08 -0.91 10.18 -39.28 -0.40 -1.31 16 24 C -0.19 -2.04 10.11 -39.44 -0.40 -2.44 16 25 C 0.10 1.18 11.18 -17.54 -0.20 0.99 16 26 N -0.48 -7.30 9.05 -9.47 -0.09 -7.39 16 27 H 0.07 1.04 6.71 -51.93 -0.35 0.70 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 1.14 6.87 -51.93 -0.36 0.79 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 32 H 0.07 1.46 6.86 -51.93 -0.36 1.10 16 33 H 0.12 2.72 5.33 -51.93 -0.28 2.44 16 34 H 0.09 1.88 4.94 -51.93 -0.26 1.63 16 35 H 0.06 1.20 5.01 -51.93 -0.26 0.94 16 36 H 0.02 0.65 8.05 -51.93 -0.42 0.23 16 37 H 0.02 0.47 4.17 -51.93 -0.22 0.25 16 38 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 39 H 0.08 1.36 7.83 -51.93 -0.41 0.95 16 40 H 0.05 0.92 5.47 -51.93 -0.28 0.63 16 41 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 43 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -28.84 334.96 -9.28 -38.12 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -6.34 Total: 5.68 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -2.11 Total: -13.67 kcal Atomic # 7 Polarization: -43.27 SS G_CDS: -0.47 Total: -43.74 kcal Atomic # 8 Polarization: -7.18 SS G_CDS: -0.39 Total: -7.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.84 -9.28 -38.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602779812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.810 kcal (2) G-P(sol) polarization free energy of solvation -28.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds