Wall clock time and date at job start Tue Mar 31 2020 07:05:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09001 * 109.98600 * 2 1 4 4 O 1.43743 * 109.87675 * 238.92314 * 2 1 3 5 5 C 1.44391 * 106.97149 * 214.06159 * 4 2 1 6 6 C 1.54995 * 103.48883 * 40.05681 * 5 4 2 7 7 C 1.54096 * 109.87668 * 121.08829 * 2 1 3 8 8 H 1.09008 * 110.59521 * 240.18634 * 7 2 1 9 9 C 1.52993 * 110.49323 * 2.77575 * 7 2 1 10 10 N 1.46896 * 109.47709 * 185.40352 * 9 7 2 11 11 C 1.46901 * 110.99992 * 291.10607 * 10 9 7 12 12 C 1.50700 * 109.46631 * 302.16857 * 11 10 9 13 13 H 1.08002 * 120.00217 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99851 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99586 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99876 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46996 * 180.02562 * 16 14 12 18 18 H 1.48499 * 109.47231 * 300.00072 * 16 14 12 19 19 H 1.48491 * 109.47214 * 60.00653 * 16 14 12 20 20 C 1.46906 * 110.99560 * 55.05347 * 10 9 7 21 21 C 1.50697 * 109.46998 * 71.42872 * 20 10 9 22 22 C 1.38229 * 119.61999 * 96.25968 * 21 20 10 23 23 C 1.38631 * 119.15980 * 179.97438 * 22 21 20 24 24 C 1.38667 * 118.42116 * 359.97438 * 23 22 21 25 25 C 1.38185 * 119.16820 * 359.97438 * 24 23 22 26 26 N 1.31852 * 119.61532 * 275.98087 * 21 20 10 27 27 H 1.08996 * 109.46991 * 298.91000 * 1 2 3 28 28 H 1.09005 * 109.47050 * 58.91366 * 1 2 3 29 29 H 1.08996 * 109.46952 * 178.91322 * 1 2 3 30 30 H 1.09005 * 110.61315 * 281.55977 * 5 4 2 31 31 H 1.08997 * 110.61658 * 158.56365 * 5 4 2 32 32 H 1.08995 * 110.90528 * 204.77799 * 6 5 4 33 33 H 1.09007 * 110.90574 * 81.17932 * 6 5 4 34 34 H 1.09002 * 109.46907 * 65.40546 * 9 7 2 35 35 H 1.08999 * 109.47494 * 305.40988 * 9 7 2 36 36 H 1.09003 * 109.46983 * 182.17625 * 11 10 9 37 37 H 1.08992 * 109.47347 * 62.17182 * 11 10 9 38 38 H 0.96999 * 119.99792 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.46975 * 191.42882 * 20 10 9 40 40 H 1.08996 * 109.47342 * 311.42639 * 20 10 9 41 41 H 1.07994 * 120.41739 * 359.94598 * 22 21 20 42 42 H 1.08000 * 120.78251 * 179.97438 * 23 22 21 43 43 H 1.08000 * 120.41892 * 179.97438 * 24 23 22 44 44 H 1.07991 * 119.62077 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6978 -1.1578 5 6 3.2380 -1.3641 -0.7648 6 6 2.9196 -1.8914 0.6574 7 6 2.0540 -0.7483 1.2410 8 1 2.6615 -0.0872 1.8593 9 6 0.8900 -1.3191 2.0533 10 7 1.4039 -1.9139 3.2943 11 6 2.1837 -3.1267 3.0132 12 6 1.3227 -4.1169 2.2722 13 1 0.2987 -3.8699 2.0336 14 6 1.8424 -5.3380 1.8980 15 7 3.0895 -5.6386 2.1882 16 14 0.7754 -6.5651 0.9789 17 1 1.5636 -7.7913 0.6948 18 1 -0.4034 -6.9168 1.8108 19 1 0.3176 -5.9634 -0.2991 20 6 2.1997 -0.9407 4.0542 21 6 1.2868 0.1026 4.6453 22 6 0.8518 -0.0307 5.9505 23 6 0.0127 0.9348 6.4848 24 6 -0.3588 2.0034 5.6828 25 6 0.1168 2.0702 4.3871 26 7 0.9168 1.1348 3.9131 27 1 -0.3633 0.4968 0.8996 28 1 -0.3633 0.5306 -0.8801 29 1 -0.3633 -1.0275 -0.0195 30 1 4.0686 -0.6587 -0.7357 31 1 3.4586 -2.1906 -1.4403 32 1 3.8332 -2.0224 1.2372 33 1 2.3541 -2.8221 0.6097 34 1 0.3792 -2.0839 1.4682 35 1 0.1899 -0.5198 2.2963 36 1 2.5197 -3.5681 3.9515 37 1 3.0489 -2.8690 2.4025 38 1 3.4550 -6.4977 1.9253 39 1 2.7323 -1.4533 4.8553 40 1 2.9179 -0.4605 3.3896 41 1 1.1614 -0.8765 6.5464 42 1 -0.3433 0.8566 7.5014 43 1 -1.0116 2.7737 6.0660 44 1 -0.1674 2.8993 3.7563 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602779812.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:43 Heat of formation + Delta-G solvation = -9.586437 kcal Electronic energy + Delta-G solvation = -24478.238595 eV Core-core repulsion = 21202.385597 eV Total energy + Delta-G solvation = -3275.852998 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.41957 -40.64089 -38.19332 -34.81796 -33.73741 -33.24347 -32.58403 -31.92519 -29.31560 -27.96575 -26.51741 -25.70007 -24.25466 -23.40396 -22.75525 -22.15490 -20.10254 -18.32730 -18.03841 -17.48928 -16.94918 -16.82564 -16.58532 -16.26511 -16.15306 -16.00957 -15.32250 -14.95439 -14.53114 -14.28349 -14.02803 -14.01635 -13.74058 -13.40508 -13.26888 -12.95625 -12.79353 -12.77090 -12.64190 -12.47063 -12.34340 -11.92207 -11.87979 -11.69517 -11.46781 -11.30828 -11.13202 -10.67354 -10.56350 -10.47227 -10.22406 -9.82206 -8.77628 -8.14669 -6.19365 0.29438 0.49785 1.41505 1.42071 1.49359 2.42086 2.89414 2.99632 3.18744 3.42755 3.63537 3.74632 3.86845 3.95923 4.11049 4.12748 4.21438 4.28842 4.34659 4.37752 4.51091 4.53994 4.57310 4.66887 4.71637 4.82239 4.84346 4.91751 4.95995 4.99035 5.03266 5.17659 5.26192 5.34369 5.37582 5.39547 5.44669 5.50917 5.57661 5.69991 5.92452 6.05725 6.12338 6.41354 6.70168 6.94153 7.20433 7.46745 8.95351 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.006150 C = 0.004820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.455803 B = 4551.913948 C = 5808.152746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.085 3.915 3 H 0.075 0.925 4 O -0.396 6.396 5 C 0.048 3.952 6 C -0.149 4.149 7 C -0.135 4.135 8 H 0.081 0.919 9 C 0.089 3.911 10 N -0.536 5.536 11 C 0.189 3.811 12 C -0.507 4.507 13 H 0.053 0.947 14 C 0.016 3.984 15 N -0.924 5.924 16 Si 0.947 3.053 17 H -0.284 1.284 18 H -0.273 1.273 19 H -0.273 1.273 20 C 0.095 3.905 21 C 0.128 3.872 22 C -0.170 4.170 23 C -0.077 4.077 24 C -0.174 4.174 25 C 0.084 3.916 26 N -0.500 5.500 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.076 0.924 36 H -0.006 1.006 37 H 0.012 0.988 38 H 0.262 0.738 39 H 0.076 0.924 40 H 0.047 0.953 41 H 0.133 0.867 42 H 0.160 0.840 43 H 0.165 0.835 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 16.089 4.032 17.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.027 3.973 3 H 0.092 0.908 4 O -0.316 6.316 5 C -0.028 4.028 6 C -0.186 4.186 7 C -0.155 4.155 8 H 0.100 0.900 9 C -0.039 4.039 10 N -0.260 5.260 11 C 0.064 3.936 12 C -0.545 4.545 13 H 0.071 0.929 14 C -0.183 4.183 15 N -0.565 5.565 16 Si 0.773 3.227 17 H -0.209 1.209 18 H -0.199 1.199 19 H -0.198 1.198 20 C -0.033 4.033 21 C -0.009 4.009 22 C -0.191 4.191 23 C -0.103 4.103 24 C -0.193 4.193 25 C -0.073 4.073 26 N -0.210 5.210 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.012 0.988 37 H 0.029 0.971 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.151 0.849 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -4.415 15.844 3.259 16.768 hybrid contribution 0.406 -1.120 0.238 1.215 sum -4.008 14.724 3.497 15.656 Atomic orbital electron populations 1.21934 0.93395 1.02102 1.02653 1.22695 0.95667 0.95069 0.83855 0.90757 1.88784 1.40492 1.68103 1.34261 1.23616 0.87336 0.96132 0.95696 1.23401 0.99869 0.99892 0.95437 1.23010 0.98600 0.96709 0.97177 0.90044 1.22104 0.95543 0.97270 0.88981 1.62274 1.38018 1.05193 1.20470 1.19854 0.92905 0.86419 0.94442 1.21250 0.97989 1.00168 1.35126 0.92920 1.25587 0.96012 0.99634 0.97069 1.70039 1.14913 1.23331 1.48201 0.85774 0.79008 0.78624 0.79286 1.20927 1.19866 1.19845 1.20995 0.93305 0.91404 0.97620 1.21036 0.95885 0.92668 0.91286 1.22100 0.99822 1.00813 0.96335 1.21919 0.94403 0.92682 1.01288 1.22457 1.01722 0.99970 0.95184 1.23245 0.92674 0.96622 0.94739 1.67461 1.12890 1.02513 1.38121 0.90072 0.91434 0.93385 0.91164 0.89345 0.92035 0.90338 0.92446 0.90580 0.98760 0.97087 0.92930 0.90548 0.93516 0.84865 0.82253 0.81727 0.80630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.30 8.38 71.98 0.60 -3.69 16 2 C 0.09 2.78 4.05 30.97 0.13 2.91 16 3 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 4 O -0.40 -14.47 11.19 -148.98 -1.67 -16.13 16 5 C 0.05 1.68 7.72 72.66 0.56 2.24 16 6 C -0.15 -6.00 4.58 31.89 0.15 -5.85 16 7 C -0.13 -4.88 2.75 -9.81 -0.03 -4.91 16 8 H 0.08 2.91 5.74 -2.38 -0.01 2.89 16 9 C 0.09 3.50 3.31 86.30 0.29 3.79 16 10 N -0.54 -22.83 4.72 -905.39 -4.27 -27.10 16 11 C 0.19 9.57 4.14 85.56 0.35 9.92 16 12 C -0.51 -27.70 6.66 25.60 0.17 -27.53 16 13 H 0.05 2.92 6.57 -2.91 -0.02 2.90 16 14 C 0.02 0.87 5.46 84.66 0.46 1.33 16 15 N -0.92 -53.60 13.29 21.45 0.28 -53.31 16 16 Si 0.95 44.26 29.54 68.60 2.03 46.29 16 17 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 19 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 20 C 0.10 3.45 5.08 85.55 0.43 3.88 16 21 C 0.13 4.02 5.88 42.55 0.25 4.27 16 22 C -0.17 -4.54 9.72 22.36 0.22 -4.32 16 23 C -0.08 -1.54 10.18 22.47 0.23 -1.31 16 24 C -0.17 -3.08 10.11 22.36 0.23 -2.86 16 25 C 0.08 1.83 11.18 84.67 0.95 2.78 16 26 N -0.50 -14.54 9.05 -183.89 -1.66 -16.20 16 27 H 0.08 2.24 6.71 -2.39 -0.02 2.22 16 28 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 29 H 0.05 1.61 6.87 -2.39 -0.02 1.60 16 30 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 31 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 32 H 0.06 2.58 6.86 -2.39 -0.02 2.56 16 33 H 0.08 3.82 5.33 -2.38 -0.01 3.81 16 34 H 0.06 2.59 4.94 -2.39 -0.01 2.58 16 35 H 0.08 2.81 5.01 -2.39 -0.01 2.80 16 36 H -0.01 -0.32 8.05 -2.39 -0.02 -0.34 16 37 H 0.01 0.60 4.17 -2.39 -0.01 0.59 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.08 2.74 7.83 -2.39 -0.02 2.72 16 40 H 0.05 1.71 5.47 -2.39 -0.01 1.70 16 41 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 42 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 43 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 44 H 0.18 2.70 8.06 -2.92 -0.02 2.68 16 Total: -1.00 -63.89 334.96 0.69 -63.20 By element: Atomic # 1 Polarization: 21.61 SS G_CDS: 1.00 Total: 22.61 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: 4.98 Total: -19.34 kcal Atomic # 7 Polarization: -90.97 SS G_CDS: -5.65 Total: -96.62 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -1.67 Total: -16.13 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Total: -63.89 0.69 -63.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602779812.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.610 kcal (2) G-P(sol) polarization free energy of solvation -63.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds