Wall clock time and date at job start Tue Mar 31 2020 08:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47565 * 2 1 4 4 N 1.46907 * 109.46592 * 119.99706 * 2 1 3 5 5 C 1.46898 * 111.00200 * 278.94837 * 4 2 1 6 6 H 1.08999 * 109.47230 * 35.42194 * 5 4 2 7 7 C 1.53000 * 109.47328 * 155.42472 * 5 4 2 8 8 C 1.50698 * 109.46885 * 275.42694 * 5 4 2 9 9 H 1.08001 * 120.00642 * 359.97438 * 8 5 4 10 10 C 1.37879 * 120.00151 * 180.02562 * 8 5 4 11 11 N 1.31510 * 120.00764 * 179.97438 * 10 8 5 12 12 Si 1.86807 * 119.99434 * 359.97438 * 10 8 5 13 13 H 1.48495 * 109.46810 * 90.00593 * 12 10 8 14 14 H 1.48504 * 109.46706 * 210.00106 * 12 10 8 15 15 H 1.48499 * 109.47451 * 330.00134 * 12 10 8 16 16 C 1.50703 * 109.47527 * 239.99411 * 2 1 3 17 17 O 1.21282 * 120.00196 * 240.00774 * 16 2 1 18 18 N 1.34776 * 119.99631 * 60.00415 * 16 2 1 19 19 C 1.46506 * 119.99952 * 359.97438 * 18 16 2 20 20 C 1.46502 * 120.00064 * 180.02562 * 18 16 2 21 21 C 1.50699 * 109.47262 * 89.99724 * 20 18 16 22 22 C 1.38231 * 119.99779 * 90.00240 * 21 20 18 23 23 C 1.38244 * 119.99843 * 179.97438 * 22 21 20 24 24 C 1.38237 * 119.99600 * 0.09027 * 23 22 21 25 25 C 1.38233 * 120.00423 * 359.86589 * 24 23 22 26 26 C 1.38236 * 119.99800 * 0.08693 * 25 24 23 27 27 H 1.08993 * 109.47089 * 291.68212 * 1 2 3 28 28 H 1.08998 * 109.46632 * 51.68647 * 1 2 3 29 29 H 1.09003 * 109.47145 * 171.68110 * 1 2 3 30 30 H 1.00896 * 111.00140 * 42.90476 * 4 2 1 31 31 H 1.08994 * 109.47205 * 185.46261 * 7 5 4 32 32 H 1.08998 * 109.47052 * 305.46112 * 7 5 4 33 33 H 1.08998 * 109.46939 * 65.46008 * 7 5 4 34 34 H 0.96999 * 120.00392 * 179.97438 * 11 10 8 35 35 H 1.08996 * 109.47335 * 270.00111 * 19 18 16 36 36 H 1.09000 * 109.47083 * 30.00565 * 19 18 16 37 37 H 1.09002 * 109.47007 * 150.00239 * 19 18 16 38 38 H 1.08999 * 109.46748 * 329.99544 * 20 18 16 39 39 H 1.09001 * 109.46810 * 210.00102 * 20 18 16 40 40 H 1.07994 * 120.00379 * 359.69938 * 22 21 20 41 41 H 1.07997 * 119.99910 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.99499 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.99867 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.00215 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.9939 0.1970 2.3683 6 1 1.1283 0.8563 2.3042 7 6 1.9033 -0.6410 3.6452 8 6 3.2536 1.0236 2.3982 9 1 3.9990 0.9002 1.6264 10 6 3.4552 1.9367 3.4114 11 7 4.5547 2.6578 3.4379 12 14 2.1663 2.1497 4.7467 13 1 2.4547 1.2177 5.8662 14 1 2.1974 3.5479 5.2462 15 1 0.8222 1.8530 4.1893 16 6 2.0324 -0.7105 -1.2304 17 8 2.7296 -1.6967 -1.1190 18 7 1.7069 -0.2501 -2.4545 19 6 0.8642 0.9408 -2.5890 20 6 2.1949 -0.9411 -3.6507 21 6 1.2018 -1.9978 -4.0606 22 6 0.1823 -1.6843 -4.9398 23 6 -0.7284 -2.6538 -5.3162 24 6 -0.6205 -3.9364 -4.8119 25 6 0.3995 -4.2502 -3.9334 26 6 1.3107 -3.2809 -3.5577 27 1 -0.3633 0.3797 0.9549 28 1 -0.3632 0.6371 -0.8063 29 1 -0.3633 -1.0169 -0.1487 30 1 1.4896 -1.5333 1.3734 31 1 1.7866 0.0185 4.5051 32 1 1.0448 -1.3095 3.5809 33 1 2.8140 -1.2290 3.7592 34 1 4.6963 3.3004 4.1505 35 1 -0.1836 0.6425 -2.6226 36 1 1.0274 1.5995 -1.7361 37 1 1.1220 1.4663 -3.5085 38 1 3.1549 -1.4093 -3.4335 39 1 2.3162 -0.2225 -4.4612 40 1 0.0945 -0.6808 -5.3292 41 1 -1.5252 -2.4088 -6.0028 42 1 -1.3322 -4.6937 -5.1057 43 1 0.4840 -5.2523 -3.5397 44 1 2.1075 -3.5258 -2.8710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602860652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:09 Heat of formation + Delta-G solvation = 9.035776 kcal Electronic energy + Delta-G solvation = -23510.332030 eV Core-core repulsion = 20235.286552 eV Total energy + Delta-G solvation = -3275.045478 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.07166 -38.90288 -36.34842 -35.36112 -33.10252 -31.91992 -30.96619 -30.80139 -27.82773 -26.90043 -26.09356 -25.07421 -23.12108 -22.60701 -21.36131 -20.15429 -18.87595 -16.97731 -16.70780 -16.56523 -16.03556 -15.58094 -15.07544 -14.79653 -14.73650 -14.29926 -14.01343 -13.48313 -13.31182 -13.16587 -13.05266 -12.80497 -12.62792 -12.49153 -12.21848 -12.11136 -11.97220 -11.63262 -11.34759 -11.11497 -11.04022 -10.97809 -10.75262 -10.41883 -10.28455 -9.62711 -9.31850 -9.20083 -8.99723 -8.79682 -8.53685 -8.51547 -7.35919 -6.02934 -4.00204 1.20272 1.32925 3.09227 3.16971 3.26717 3.34093 3.37915 3.81193 4.40865 4.65038 4.73553 4.85708 4.90353 5.02607 5.08306 5.14856 5.23595 5.27016 5.39853 5.42534 5.47362 5.53542 5.58070 5.68253 5.73598 5.90445 5.94049 5.99584 6.11120 6.28680 6.29674 6.35104 6.41698 6.43929 6.54961 6.55847 6.63354 6.77284 6.92306 7.15414 7.54617 7.71333 7.94873 8.23249 8.62956 8.76679 9.10417 9.59699 11.10640 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.003664 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.517811 B = 7640.015893 C = 7826.834727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.077 3.923 3 H 0.112 0.888 4 N -0.651 5.651 5 C 0.184 3.816 6 H 0.002 0.998 7 C -0.155 4.155 8 C -0.497 4.497 9 H 0.081 0.919 10 C 0.067 3.933 11 N -0.901 5.901 12 Si 0.884 3.116 13 H -0.279 1.279 14 H -0.297 1.297 15 H -0.270 1.270 16 C 0.525 3.475 17 O -0.516 6.516 18 N -0.620 5.620 19 C 0.078 3.922 20 C 0.155 3.845 21 C -0.101 4.101 22 C -0.109 4.109 23 C -0.128 4.128 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.094 4.094 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.325 0.675 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.063 0.937 34 H 0.263 0.737 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.092 0.908 39 H 0.081 0.919 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.699 -7.103 -16.954 22.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.037 4.037 3 H 0.130 0.870 4 N -0.281 5.281 5 C 0.076 3.924 6 H 0.020 0.980 7 C -0.212 4.212 8 C -0.535 4.535 9 H 0.099 0.901 10 C -0.134 4.134 11 N -0.540 5.540 12 Si 0.715 3.285 13 H -0.206 1.206 14 H -0.225 1.225 15 H -0.196 1.196 16 C 0.313 3.687 17 O -0.389 6.389 18 N -0.355 5.355 19 C -0.065 4.065 20 C 0.032 3.968 21 C -0.103 4.103 22 C -0.127 4.127 23 C -0.146 4.146 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.113 4.113 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.143 0.857 31 H 0.062 0.938 32 H 0.047 0.953 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.098 0.902 37 H 0.085 0.915 38 H 0.110 0.890 39 H 0.100 0.900 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.513 -7.360 -16.882 21.719 hybrid contribution -1.725 0.288 1.008 2.018 sum -13.237 -7.072 -15.873 21.845 Atomic orbital electron populations 1.22707 0.96652 1.02151 1.03202 1.21363 0.92515 0.99786 0.90004 0.87012 1.60139 1.58177 1.07194 1.02541 1.19650 0.97146 0.90367 0.85282 0.98007 1.22298 1.00249 0.99533 0.99145 1.21039 1.03178 1.18021 1.11296 0.90110 1.24952 0.95186 0.95622 0.97640 1.69887 1.25598 1.24937 1.33537 0.86926 0.82691 0.76071 0.82826 1.20631 1.22508 1.19564 1.20971 0.79471 0.84426 0.83863 1.90625 1.36385 1.25931 1.85965 1.47901 1.52911 1.29303 1.05433 1.21956 0.94318 0.87226 1.03037 1.20306 0.96181 0.93089 0.87237 1.20325 0.97465 0.95223 0.97249 1.21029 0.94712 0.99107 0.97866 1.21090 0.99302 0.93573 1.00613 1.21144 0.98342 0.96675 0.97846 1.21194 0.95336 0.99516 0.98173 1.21300 0.99105 0.92601 0.98271 0.91511 0.91364 0.92817 0.85745 0.93798 0.95298 0.91791 0.92728 0.92771 0.90225 0.91502 0.89004 0.90022 0.86326 0.86343 0.86416 0.86194 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 8.74 37.16 0.32 -2.38 16 2 C 0.08 1.40 2.02 -68.86 -0.14 1.26 16 3 H 0.11 2.18 6.92 -51.93 -0.36 1.82 16 4 N -0.65 -13.81 5.52 -102.17 -0.56 -14.37 16 5 C 0.18 4.31 1.99 -68.87 -0.14 4.17 16 6 H 0.00 0.06 5.87 -51.93 -0.30 -0.25 16 7 C -0.15 -3.38 8.65 37.16 0.32 -3.06 16 8 C -0.50 -14.06 9.04 -34.44 -0.31 -14.37 16 9 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 10 C 0.07 1.93 5.45 -17.82 -0.10 1.84 16 11 N -0.90 -27.66 13.96 55.43 0.77 -26.88 16 12 Si 0.88 21.74 24.32 -169.99 -4.13 17.60 16 13 H -0.28 -6.75 6.92 56.52 0.39 -6.36 16 14 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 16 C 0.52 9.24 7.13 -10.98 -0.08 9.16 16 17 O -0.52 -10.76 15.54 5.56 0.09 -10.68 16 18 N -0.62 -8.38 2.86 -182.95 -0.52 -8.91 16 19 C 0.08 0.79 8.83 59.85 0.53 1.32 16 20 C 0.15 1.86 5.58 -5.19 -0.03 1.83 16 21 C -0.10 -1.20 5.46 -104.63 -0.57 -1.77 16 22 C -0.11 -1.09 9.70 -39.58 -0.38 -1.47 16 23 C -0.13 -1.21 10.05 -39.58 -0.40 -1.60 16 24 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 25 C -0.12 -1.37 10.05 -39.58 -0.40 -1.77 16 26 C -0.09 -1.20 9.70 -39.58 -0.38 -1.59 16 27 H 0.07 1.00 7.04 -51.93 -0.37 0.64 16 28 H 0.07 0.80 4.80 -51.93 -0.25 0.55 16 29 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 30 H 0.33 6.36 8.09 -39.29 -0.32 6.04 16 31 H 0.04 0.99 3.43 -51.93 -0.18 0.81 16 32 H 0.03 0.53 8.01 -51.93 -0.42 0.11 16 33 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 35 H 0.05 0.49 7.14 -51.93 -0.37 0.12 16 36 H 0.08 0.86 5.91 -51.93 -0.31 0.55 16 37 H 0.07 0.53 7.89 -51.93 -0.41 0.12 16 38 H 0.09 1.26 7.36 -51.93 -0.38 0.87 16 39 H 0.08 0.76 7.84 -51.93 -0.41 0.35 16 40 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.13 1.84 7.58 -52.49 -0.40 1.45 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -33.32 347.95 -7.87 -41.19 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.60 Total: 6.82 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.15 Total: -10.02 kcal Atomic # 7 Polarization: -49.85 SS G_CDS: -0.31 Total: -50.16 kcal Atomic # 8 Polarization: -10.76 SS G_CDS: 0.09 Total: -10.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.13 Total: 17.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.32 -7.87 -41.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.225 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds