Wall clock time and date at job start Tue Mar 31 2020 08:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08994 * 109.47565 * 2 1 4 4 N 1.46907 * 109.46592 * 119.99706 * 2 1 3 5 5 C 1.46898 * 111.00200 * 278.94837 * 4 2 1 6 6 H 1.08999 * 109.47230 * 35.42194 * 5 4 2 7 7 C 1.53000 * 109.47328 * 155.42472 * 5 4 2 8 8 C 1.50698 * 109.46885 * 275.42694 * 5 4 2 9 9 H 1.08001 * 120.00642 * 359.97438 * 8 5 4 10 10 C 1.37879 * 120.00151 * 180.02562 * 8 5 4 11 11 N 1.31510 * 120.00764 * 179.97438 * 10 8 5 12 12 Si 1.86807 * 119.99434 * 359.97438 * 10 8 5 13 13 H 1.48495 * 109.46810 * 90.00593 * 12 10 8 14 14 H 1.48504 * 109.46706 * 210.00106 * 12 10 8 15 15 H 1.48499 * 109.47451 * 330.00134 * 12 10 8 16 16 C 1.50703 * 109.47527 * 239.99411 * 2 1 3 17 17 O 1.21282 * 120.00196 * 240.00774 * 16 2 1 18 18 N 1.34776 * 119.99631 * 60.00415 * 16 2 1 19 19 C 1.46506 * 119.99952 * 359.97438 * 18 16 2 20 20 C 1.46502 * 120.00064 * 180.02562 * 18 16 2 21 21 C 1.50699 * 109.47262 * 89.99724 * 20 18 16 22 22 C 1.38231 * 119.99779 * 90.00240 * 21 20 18 23 23 C 1.38244 * 119.99843 * 179.97438 * 22 21 20 24 24 C 1.38237 * 119.99600 * 0.09027 * 23 22 21 25 25 C 1.38233 * 120.00423 * 359.86589 * 24 23 22 26 26 C 1.38236 * 119.99800 * 0.08693 * 25 24 23 27 27 H 1.08993 * 109.47089 * 291.68212 * 1 2 3 28 28 H 1.08998 * 109.46632 * 51.68647 * 1 2 3 29 29 H 1.09003 * 109.47145 * 171.68110 * 1 2 3 30 30 H 1.00896 * 111.00140 * 42.90476 * 4 2 1 31 31 H 1.08994 * 109.47205 * 185.46261 * 7 5 4 32 32 H 1.08998 * 109.47052 * 305.46112 * 7 5 4 33 33 H 1.08998 * 109.46939 * 65.46008 * 7 5 4 34 34 H 0.96999 * 120.00392 * 179.97438 * 11 10 8 35 35 H 1.08996 * 109.47335 * 270.00111 * 19 18 16 36 36 H 1.09000 * 109.47083 * 30.00565 * 19 18 16 37 37 H 1.09002 * 109.47007 * 150.00239 * 19 18 16 38 38 H 1.08999 * 109.46748 * 329.99544 * 20 18 16 39 39 H 1.09001 * 109.46810 * 210.00102 * 20 18 16 40 40 H 1.07994 * 120.00379 * 359.69938 * 22 21 20 41 41 H 1.07997 * 119.99910 * 179.97438 * 23 22 21 42 42 H 1.07998 * 119.99499 * 179.97438 * 24 23 22 43 43 H 1.07997 * 119.99867 * 180.02562 * 25 24 23 44 44 H 1.07996 * 120.00215 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.9939 0.1970 2.3683 6 1 1.1283 0.8563 2.3042 7 6 1.9033 -0.6410 3.6452 8 6 3.2536 1.0236 2.3982 9 1 3.9990 0.9002 1.6264 10 6 3.4552 1.9367 3.4114 11 7 4.5547 2.6578 3.4379 12 14 2.1663 2.1497 4.7467 13 1 2.4547 1.2177 5.8662 14 1 2.1974 3.5479 5.2462 15 1 0.8222 1.8530 4.1893 16 6 2.0324 -0.7105 -1.2304 17 8 2.7296 -1.6967 -1.1190 18 7 1.7069 -0.2501 -2.4545 19 6 0.8642 0.9408 -2.5890 20 6 2.1949 -0.9411 -3.6507 21 6 1.2018 -1.9978 -4.0606 22 6 0.1823 -1.6843 -4.9398 23 6 -0.7284 -2.6538 -5.3162 24 6 -0.6205 -3.9364 -4.8119 25 6 0.3995 -4.2502 -3.9334 26 6 1.3107 -3.2809 -3.5577 27 1 -0.3633 0.3797 0.9549 28 1 -0.3632 0.6371 -0.8063 29 1 -0.3633 -1.0169 -0.1487 30 1 1.4896 -1.5333 1.3734 31 1 1.7866 0.0185 4.5051 32 1 1.0448 -1.3095 3.5809 33 1 2.8140 -1.2290 3.7592 34 1 4.6963 3.3004 4.1505 35 1 -0.1836 0.6425 -2.6226 36 1 1.0274 1.5995 -1.7361 37 1 1.1220 1.4663 -3.5085 38 1 3.1549 -1.4093 -3.4335 39 1 2.3162 -0.2225 -4.4612 40 1 0.0945 -0.6808 -5.3292 41 1 -1.5252 -2.4088 -6.0028 42 1 -1.3322 -4.6937 -5.1057 43 1 0.4840 -5.2523 -3.5397 44 1 2.1075 -3.5258 -2.8710 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602860652.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:22:08 Heat of formation + Delta-G solvation = -14.077706 kcal Electronic energy + Delta-G solvation = -23511.334306 eV Core-core repulsion = 20235.286552 eV Total energy + Delta-G solvation = -3276.047754 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.25074 -39.86676 -37.97124 -36.58367 -34.89280 -33.35568 -32.21740 -31.75717 -29.21110 -27.96151 -27.22911 -27.11679 -24.35154 -23.40313 -22.37170 -21.96873 -20.11023 -18.73801 -18.01747 -17.83142 -17.24496 -16.70371 -16.51469 -16.09260 -15.78624 -15.73611 -15.33761 -14.82550 -14.65769 -14.49155 -14.25486 -14.05337 -13.91141 -13.61767 -13.40501 -13.26875 -13.26628 -12.91183 -12.62260 -12.55548 -12.46175 -12.35193 -12.07173 -12.01225 -11.82540 -11.45777 -11.32711 -10.73644 -10.64189 -9.79989 -9.73593 -9.58519 -9.01315 -8.25654 -6.28769 0.38357 0.52203 1.32710 1.36041 1.47348 1.74284 2.08144 2.33570 2.96076 3.07763 3.43834 3.66200 3.87723 3.97090 4.15238 4.17949 4.21722 4.30678 4.32541 4.36338 4.50660 4.58768 4.60574 4.65168 4.67473 4.73618 4.76485 4.81307 4.85672 4.94564 4.96867 5.11949 5.16922 5.18469 5.39358 5.57869 5.59149 5.63775 5.67448 5.73270 6.04357 6.13802 6.31770 6.54273 6.77002 6.89063 7.31765 7.35954 8.92273 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.003664 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.517811 B = 7640.015893 C = 7826.834727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.076 3.924 3 H 0.090 0.910 4 N -0.672 5.672 5 C 0.191 3.809 6 H 0.012 0.988 7 C -0.152 4.152 8 C -0.502 4.502 9 H 0.023 0.977 10 C 0.008 3.992 11 N -0.953 5.953 12 Si 0.954 3.046 13 H -0.269 1.269 14 H -0.298 1.298 15 H -0.241 1.241 16 C 0.518 3.482 17 O -0.563 6.563 18 N -0.611 5.611 19 C 0.068 3.932 20 C 0.153 3.847 21 C -0.113 4.113 22 C -0.106 4.106 23 C -0.126 4.126 24 C -0.123 4.123 25 C -0.136 4.136 26 C -0.121 4.121 27 H 0.064 0.936 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.335 0.665 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.098 0.902 38 H 0.062 0.938 39 H 0.116 0.884 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.143 0.857 43 H 0.127 0.873 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.835 -6.865 -18.144 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.037 4.037 3 H 0.108 0.892 4 N -0.304 5.304 5 C 0.082 3.918 6 H 0.030 0.970 7 C -0.210 4.210 8 C -0.541 4.541 9 H 0.041 0.959 10 C -0.189 4.189 11 N -0.594 5.594 12 Si 0.781 3.219 13 H -0.195 1.195 14 H -0.225 1.225 15 H -0.165 1.165 16 C 0.306 3.694 17 O -0.440 6.440 18 N -0.345 5.345 19 C -0.074 4.074 20 C 0.031 3.969 21 C -0.114 4.114 22 C -0.124 4.124 23 C -0.144 4.144 24 C -0.141 4.141 25 C -0.154 4.154 26 C -0.140 4.140 27 H 0.083 0.917 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.154 0.846 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.117 0.883 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.161 0.839 43 H 0.145 0.855 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -15.689 -7.120 -18.126 25.007 hybrid contribution -0.364 0.192 1.195 1.264 sum -16.053 -6.928 -16.931 24.338 Atomic orbital electron populations 1.22580 0.93188 1.03194 1.04328 1.21363 0.95190 0.98118 0.89076 0.89190 1.59922 1.59871 1.07670 1.02907 1.19433 0.94608 0.90580 0.87173 0.97023 1.22209 1.01369 0.99704 0.97714 1.21241 1.03959 1.19100 1.09772 0.95864 1.25861 0.97571 0.95048 1.00391 1.70064 1.28288 1.26154 1.34891 0.85788 0.80725 0.76042 0.79391 1.19548 1.22525 1.16514 1.20978 0.79238 0.84002 0.85144 1.90606 1.38554 1.28014 1.86812 1.47914 1.52257 1.29760 1.04523 1.22243 0.94845 0.85901 1.04375 1.20417 0.95154 0.94004 0.87287 1.20284 0.98302 0.94450 0.98339 1.21310 0.93664 1.00649 0.96764 1.21502 0.99549 0.93032 1.00282 1.21484 0.97943 0.97787 0.96846 1.21359 0.95625 0.99587 0.98851 1.21230 0.99462 0.94155 0.99148 0.91673 0.88333 0.92292 0.84613 0.93976 0.91289 0.93298 0.92605 0.90618 0.91044 0.88327 0.91947 0.86591 0.83570 0.83299 0.83930 0.85502 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.63 8.74 71.98 0.63 -4.01 16 2 C 0.08 2.77 2.02 44.17 0.09 2.86 16 3 H 0.09 3.64 6.92 -2.39 -0.02 3.62 16 4 N -0.67 -29.02 5.52 -477.15 -2.63 -31.65 16 5 C 0.19 8.90 1.99 44.17 0.09 8.99 16 6 H 0.01 0.55 5.87 -2.39 -0.01 0.53 16 7 C -0.15 -6.40 8.65 71.98 0.62 -5.78 16 8 C -0.50 -29.51 9.04 25.60 0.23 -29.27 16 9 H 0.02 1.58 8.06 -2.91 -0.02 1.56 16 10 C 0.01 0.46 5.45 84.66 0.46 0.92 16 11 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 12 Si 0.95 44.42 24.32 68.60 1.67 46.08 16 13 H -0.27 -12.07 6.92 99.48 0.69 -11.38 16 14 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 15 H -0.24 -10.06 6.53 99.48 0.65 -9.41 16 16 C 0.52 18.79 7.13 87.66 0.63 19.42 16 17 O -0.56 -25.00 15.54 -3.04 -0.05 -25.05 16 18 N -0.61 -16.14 2.86 -851.11 -2.43 -18.57 16 19 C 0.07 1.20 8.83 127.77 1.13 2.33 16 20 C 0.15 3.63 5.58 85.63 0.48 4.11 16 21 C -0.11 -2.55 5.46 -19.87 -0.11 -2.66 16 22 C -0.11 -1.76 9.70 22.27 0.22 -1.55 16 23 C -0.13 -1.90 10.05 22.27 0.22 -1.67 16 24 C -0.12 -2.07 10.05 22.27 0.22 -1.85 16 25 C -0.14 -2.95 10.05 22.27 0.22 -2.73 16 26 C -0.12 -3.20 9.70 22.27 0.22 -2.99 16 27 H 0.06 1.78 7.04 -2.39 -0.02 1.76 16 28 H 0.10 1.99 4.80 -2.39 -0.01 1.98 16 29 H 0.06 1.52 8.12 -2.39 -0.02 1.50 16 30 H 0.34 13.08 8.09 -89.70 -0.73 12.35 16 31 H 0.04 1.77 3.43 -2.39 -0.01 1.76 16 32 H 0.07 2.33 8.01 -2.39 -0.02 2.31 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 35 H 0.08 1.06 7.14 -2.39 -0.02 1.04 16 36 H 0.07 1.41 5.91 -2.39 -0.01 1.40 16 37 H 0.10 1.16 7.89 -2.39 -0.02 1.14 16 38 H 0.06 1.84 7.36 -2.39 -0.02 1.82 16 39 H 0.12 1.89 7.84 -2.39 -0.02 1.87 16 40 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 41 H 0.15 1.35 8.06 -2.91 -0.02 1.32 16 42 H 0.14 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.13 2.41 8.06 -2.91 -0.02 2.38 16 44 H 0.10 3.15 7.58 -2.91 -0.02 3.12 16 Total: -1.00 -77.95 347.95 2.40 -75.55 By element: Atomic # 1 Polarization: 27.74 SS G_CDS: 0.20 Total: 27.94 kcal Atomic # 6 Polarization: -19.23 SS G_CDS: 5.35 Total: -13.88 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -4.77 Total: -110.64 kcal Atomic # 8 Polarization: -25.00 SS G_CDS: -0.05 Total: -25.05 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.67 Total: 46.08 kcal Total: -77.95 2.40 -75.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602860652.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.468 kcal (2) G-P(sol) polarization free energy of solvation -77.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds