Wall clock time and date at job start Tue Mar 31 2020 08:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46896 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46755 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.46714 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00382 * 269.72822 * 20 19 18 22 22 C 1.38241 * 119.99964 * 179.77209 * 21 20 19 23 23 C 1.38230 * 119.99733 * 0.50093 * 22 21 20 24 24 C 1.38235 * 120.00547 * 359.75182 * 23 22 21 25 25 C 1.38238 * 119.99712 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 31 31 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 32 32 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 33 33 H 0.97005 * 119.99290 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.47138 * 299.99921 * 17 16 14 35 35 H 1.09004 * 109.46798 * 60.00147 * 17 16 14 36 36 H 1.09001 * 109.47283 * 299.99980 * 18 17 16 37 37 H 1.08995 * 109.47106 * 60.00335 * 18 17 16 38 38 H 1.08993 * 109.47352 * 299.99776 * 19 18 17 39 39 H 1.09004 * 109.46773 * 60.00396 * 19 18 17 40 40 H 1.08000 * 120.00021 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.99940 * 180.23230 * 22 21 20 42 42 H 1.08003 * 120.00124 * 179.72656 * 23 22 21 43 43 H 1.07994 * 120.00495 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99892 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 3.2865 0.3510 -7.1025 19 6 3.8003 -0.4044 -8.3298 20 6 3.8642 0.5343 -9.5070 21 6 2.7713 0.6708 -10.3424 22 6 2.8284 1.5355 -11.4194 23 6 3.9818 2.2559 -11.6670 24 6 5.0766 2.1155 -10.8347 25 6 5.0176 1.2551 -9.7544 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.9172 -1.1204 -1.0288 31 1 1.0871 0.6165 -2.5525 32 1 2.7588 1.0464 -2.1181 33 1 2.5050 1.0624 -4.8007 34 1 4.2162 -0.9964 -5.7017 35 1 2.5443 -1.4255 -6.1366 36 1 2.2911 0.7448 -7.3082 37 1 3.9629 1.1745 -6.8737 38 1 4.7957 -0.7978 -8.1240 39 1 3.1242 -1.2282 -8.5588 40 1 1.8718 0.1043 -10.1517 41 1 1.9732 1.6449 -12.0699 42 1 4.0280 2.9281 -12.5111 43 1 5.9779 2.6780 -11.0284 44 1 5.8730 1.1451 -9.1043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602861112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:34 Heat of formation + Delta-G solvation = -27.805248 kcal Electronic energy + Delta-G solvation = -21433.851382 eV Core-core repulsion = 18157.208358 eV Total energy + Delta-G solvation = -3276.643025 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.72866 -39.29221 -36.15765 -35.40562 -33.63836 -32.46823 -31.23125 -30.54668 -29.03142 -26.56865 -25.33538 -24.40206 -22.92066 -22.27312 -21.26727 -20.16603 -19.68906 -17.21022 -17.11103 -16.12764 -16.04276 -15.90946 -15.37605 -15.26142 -14.80871 -14.50031 -13.86324 -13.74834 -13.68357 -13.45372 -13.20283 -13.07058 -12.51932 -12.40540 -12.28952 -11.89304 -11.72573 -11.43965 -11.24002 -11.18097 -11.02643 -10.89405 -10.75326 -10.35152 -10.12948 -10.04628 -9.42545 -9.26933 -9.02983 -8.95778 -8.82922 -8.45882 -7.27290 -6.01988 -4.07779 0.99987 1.05250 3.01062 3.26094 3.33830 3.37375 3.41602 3.48228 4.33286 4.42499 4.45680 4.65629 4.74230 4.76604 4.90504 4.94467 5.12234 5.16614 5.25539 5.28554 5.35240 5.37241 5.43705 5.60484 5.68555 5.71648 5.83048 5.91322 5.92796 5.95012 6.12081 6.17245 6.29669 6.54669 6.66344 6.84748 7.12051 7.20066 7.44604 7.65642 7.80425 7.89302 8.27224 8.38466 8.53332 8.67770 9.02287 9.57926 11.04486 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.042445 B = 0.001969 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.523064 B =14219.193140 C =14337.334692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.002 0.998 4 C -0.517 4.517 5 H 0.061 0.939 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.673 5.673 13 C 0.044 3.956 14 C 0.512 3.488 15 O -0.526 6.526 16 N -0.742 5.742 17 C 0.120 3.880 18 C -0.124 4.124 19 C -0.079 4.079 20 C -0.079 4.079 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.127 4.127 24 C -0.119 4.119 25 C -0.117 4.117 26 H 0.033 0.967 27 H 0.082 0.918 28 H 0.003 0.997 29 H 0.261 0.739 30 H 0.340 0.660 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.398 0.602 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 4.692 -27.529 28.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.104 3.896 3 H 0.020 0.980 4 C -0.556 4.556 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.727 3.273 9 H -0.213 1.213 10 H -0.201 1.201 11 H -0.203 1.203 12 N -0.306 5.306 13 C -0.090 4.090 14 C 0.299 3.701 15 O -0.400 6.400 16 N -0.396 5.396 17 C -0.004 4.004 18 C -0.162 4.162 19 C -0.117 4.117 20 C -0.079 4.079 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.145 4.145 24 C -0.137 4.137 25 C -0.135 4.135 26 H 0.052 0.948 27 H 0.100 0.900 28 H 0.022 0.978 29 H 0.071 0.929 30 H 0.159 0.841 31 H 0.110 0.890 32 H 0.066 0.934 33 H 0.232 0.768 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.140 0.860 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.139 0.861 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.045 3.678 -27.458 28.159 hybrid contribution 0.900 0.703 0.914 1.463 sum 5.945 4.382 -26.544 27.552 Atomic orbital electron populations 1.21735 0.97768 0.99550 0.99308 1.19160 0.92734 0.92286 0.85377 0.98044 1.21219 1.31501 1.12582 0.90302 0.92091 1.24920 0.95047 0.95020 0.99058 1.69886 1.36650 1.22891 1.23584 0.86544 0.79072 0.79818 0.81873 1.21326 1.20140 1.20319 1.60501 1.33416 1.31721 1.04923 1.21810 1.01197 0.94959 0.90988 1.21092 0.77001 0.87841 0.84183 1.90675 1.48705 1.16000 1.84616 1.46062 1.69466 1.14118 1.09991 1.21271 0.99932 0.94904 0.84253 1.21767 1.02340 0.98624 0.93468 1.20532 1.02743 0.96732 0.91696 1.19901 0.93927 0.97664 0.96447 1.21101 0.98252 0.99039 0.95134 1.21167 0.98069 0.96729 0.97733 1.21160 0.93633 0.99944 0.99777 1.21165 0.98604 0.98659 0.95279 1.21101 0.97803 0.96832 0.97806 0.94788 0.89968 0.97792 0.92876 0.84099 0.88957 0.93418 0.76798 0.91715 0.91656 0.91062 0.91104 0.90495 0.90479 0.86004 0.86125 0.86247 0.86134 0.86023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 9.19 37.16 0.34 -2.80 16 2 C 0.21 5.44 2.60 -68.87 -0.18 5.26 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.49 8.59 -34.44 -0.30 -14.79 16 5 H 0.06 1.70 7.62 -52.49 -0.40 1.30 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.47 11.32 55.43 0.63 -24.85 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.67 -15.26 5.93 -109.22 -0.65 -15.91 16 13 C 0.04 0.78 5.97 -4.97 -0.03 0.75 16 14 C 0.51 8.61 7.87 -10.99 -0.09 8.53 16 15 O -0.53 -10.96 16.20 5.55 0.09 -10.87 16 16 N -0.74 -8.91 5.56 -60.29 -0.33 -9.25 16 17 C 0.12 1.25 5.67 -4.04 -0.02 1.23 16 18 C -0.12 -0.92 5.31 -26.73 -0.14 -1.06 16 19 C -0.08 -0.55 5.35 -27.88 -0.15 -0.69 16 20 C -0.08 -0.61 5.13 -104.62 -0.54 -1.14 16 21 C -0.12 -0.87 9.70 -39.58 -0.38 -1.26 16 22 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 23 C -0.13 -0.87 10.05 -39.59 -0.40 -1.27 16 24 C -0.12 -0.84 10.05 -39.58 -0.40 -1.23 16 25 C -0.12 -0.88 9.70 -39.58 -0.38 -1.26 16 26 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.08 2.22 6.07 -51.93 -0.32 1.91 16 28 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 29 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.34 7.92 7.92 -39.30 -0.31 7.61 16 31 H 0.09 1.56 7.44 -51.93 -0.39 1.17 16 32 H 0.05 0.80 8.05 -51.93 -0.42 0.38 16 33 H 0.40 3.67 8.47 -40.82 -0.35 3.33 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.50 8.09 -51.93 -0.42 0.08 16 39 H 0.08 0.50 8.08 -51.93 -0.42 0.08 16 40 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 41 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 42 H 0.12 0.59 8.06 -52.48 -0.42 0.17 16 43 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 44 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -32.41 366.70 -10.09 -42.49 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -7.17 Total: 5.67 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -3.16 Total: -9.37 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.35 Total: -50.00 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.41 -10.09 -42.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.688 kcal (2) G-P(sol) polarization free energy of solvation -32.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds