Wall clock time and date at job start Tue Mar 31 2020 08:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.50699 * 109.47093 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99801 * 0.02562 * 14 13 12 16 16 N 1.34772 * 120.00293 * 180.02562 * 14 13 12 17 17 C 1.46500 * 120.00224 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46896 * 179.97438 * 17 16 14 19 19 C 1.53004 * 109.46755 * 179.97438 * 18 17 16 20 20 C 1.50696 * 109.46714 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00382 * 269.72822 * 20 19 18 22 22 C 1.38241 * 119.99964 * 179.77209 * 21 20 19 23 23 C 1.38230 * 119.99733 * 0.50093 * 22 21 20 24 24 C 1.38235 * 120.00547 * 359.75182 * 23 22 21 25 25 C 1.38238 * 119.99712 * 359.97438 * 24 23 22 26 26 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 28 28 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 29 29 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 30 30 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 31 31 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 32 32 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 33 33 H 0.97005 * 119.99290 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.47138 * 299.99921 * 17 16 14 35 35 H 1.09004 * 109.46798 * 60.00147 * 17 16 14 36 36 H 1.09001 * 109.47283 * 299.99980 * 18 17 16 37 37 H 1.08995 * 109.47106 * 60.00335 * 18 17 16 38 38 H 1.08993 * 109.47352 * 299.99776 * 19 18 17 39 39 H 1.09004 * 109.46773 * 60.00396 * 19 18 17 40 40 H 1.08000 * 120.00021 * 359.97438 * 21 20 19 41 41 H 1.08002 * 119.99940 * 180.23230 * 22 21 20 42 42 H 1.08003 * 120.00124 * 179.72656 * 23 22 21 43 43 H 1.07994 * 120.00495 * 179.97438 * 24 23 22 44 44 H 1.08000 * 119.99892 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5885 -0.5212 -3.5558 15 8 2.8688 -1.6981 -3.4701 16 7 2.7296 0.1212 -4.7322 17 6 3.2210 -0.6023 -5.9075 18 6 3.2865 0.3510 -7.1025 19 6 3.8003 -0.4044 -8.3298 20 6 3.8642 0.5343 -9.5070 21 6 2.7713 0.6708 -10.3424 22 6 2.8284 1.5355 -11.4194 23 6 3.9818 2.2559 -11.6670 24 6 5.0766 2.1155 -10.8347 25 6 5.0176 1.2551 -9.7544 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 0.7089 1.1611 3.4845 30 1 2.9172 -1.1204 -1.0288 31 1 1.0871 0.6165 -2.5525 32 1 2.7588 1.0464 -2.1181 33 1 2.5050 1.0624 -4.8007 34 1 4.2162 -0.9964 -5.7017 35 1 2.5443 -1.4255 -6.1366 36 1 2.2911 0.7448 -7.3082 37 1 3.9629 1.1745 -6.8737 38 1 4.7957 -0.7978 -8.1240 39 1 3.1242 -1.2282 -8.5588 40 1 1.8718 0.1043 -10.1517 41 1 1.9732 1.6449 -12.0699 42 1 4.0280 2.9281 -12.5111 43 1 5.9779 2.6780 -11.0284 44 1 5.8730 1.1451 -9.1043 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602861112.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:34 Heat of formation + Delta-G solvation = -48.383107 kcal Electronic energy + Delta-G solvation = -21434.743705 eV Core-core repulsion = 18157.208358 eV Total energy + Delta-G solvation = -3277.535347 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.72784 -40.12535 -37.58081 -36.74016 -34.55457 -34.40396 -31.72731 -31.53978 -30.61980 -27.82298 -27.17444 -25.75092 -23.42249 -23.05225 -22.01560 -21.71915 -21.18483 -18.87853 -17.71198 -17.67120 -17.06413 -16.94944 -16.68492 -16.31182 -15.94043 -15.63657 -15.20719 -15.10034 -14.58716 -14.35033 -14.24111 -14.21354 -13.81444 -13.57484 -13.23501 -13.04107 -12.91916 -12.80673 -12.68351 -12.52436 -12.30437 -12.18676 -12.01258 -12.00362 -11.74395 -11.60228 -10.98127 -10.77956 -10.55685 -10.07299 -9.78460 -9.56601 -9.07444 -8.13818 -6.27035 0.47749 0.53632 1.42806 1.44873 1.52562 1.67078 2.16696 2.43215 2.92159 3.14602 3.69630 3.72184 3.92829 3.93313 4.15450 4.18641 4.28499 4.34209 4.38201 4.44463 4.48789 4.53500 4.67147 4.73434 4.80222 4.84271 4.89849 5.08244 5.12630 5.18132 5.19354 5.24601 5.29298 5.44918 5.50305 5.61977 5.65724 5.67074 5.76936 5.84498 6.16967 6.22136 6.41729 6.53398 6.76756 6.94426 7.31263 7.42673 8.91532 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.042445 B = 0.001969 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.523064 B =14219.193140 C =14337.334692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.216 3.784 3 H -0.017 1.017 4 C -0.542 4.542 5 H 0.053 0.947 6 C 0.016 3.984 7 N -0.914 5.914 8 Si 0.962 3.038 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.272 1.272 12 N -0.681 5.681 13 C 0.042 3.958 14 C 0.516 3.484 15 O -0.572 6.572 16 N -0.720 5.720 17 C 0.120 3.880 18 C -0.110 4.110 19 C -0.076 4.076 20 C -0.089 4.089 21 C -0.130 4.130 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.129 4.129 25 C -0.130 4.130 26 H 0.022 0.978 27 H 0.061 0.939 28 H 0.029 0.971 29 H 0.264 0.736 30 H 0.334 0.666 31 H 0.106 0.894 32 H 0.064 0.936 33 H 0.415 0.585 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.839 5.348 -28.623 29.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 H 0.000 1.000 4 C -0.580 4.580 5 H 0.071 0.929 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.787 3.213 9 H -0.205 1.205 10 H -0.200 1.200 11 H -0.197 1.197 12 N -0.313 5.313 13 C -0.090 4.090 14 C 0.303 3.697 15 O -0.450 6.450 16 N -0.374 5.374 17 C -0.003 4.003 18 C -0.147 4.147 19 C -0.114 4.114 20 C -0.090 4.090 21 C -0.148 4.148 22 C -0.147 4.147 23 C -0.154 4.154 24 C -0.147 4.147 25 C -0.148 4.148 26 H 0.041 0.959 27 H 0.079 0.921 28 H 0.048 0.952 29 H 0.073 0.927 30 H 0.152 0.848 31 H 0.124 0.876 32 H 0.082 0.918 33 H 0.252 0.748 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.336 4.382 -28.603 29.425 hybrid contribution 0.815 0.555 1.140 1.507 sum 6.151 4.937 -27.463 28.573 Atomic orbital electron populations 1.21568 0.97427 0.98798 0.99516 1.18983 0.92948 0.91134 0.86135 0.99973 1.21525 1.31938 1.12743 0.91792 0.92870 1.25685 0.95154 0.95718 1.01831 1.69990 1.37159 1.23782 1.24322 0.85555 0.78717 0.78582 0.78415 1.20533 1.20026 1.19677 1.60387 1.33142 1.32716 1.05093 1.21878 1.02563 0.94647 0.89937 1.20838 0.76741 0.87100 0.85049 1.90663 1.51118 1.17828 1.85404 1.45870 1.67620 1.14869 1.09012 1.21384 0.99173 0.95382 0.84385 1.21647 1.02950 0.97959 0.92188 1.20493 1.02982 0.96649 0.91228 1.19998 0.94200 0.97978 0.96781 1.21316 0.98649 0.99413 0.95415 1.21442 0.98775 0.96573 0.97893 1.21456 0.93544 1.00128 1.00279 1.21440 0.99360 0.98719 0.95181 1.21315 0.98151 0.97054 0.98292 0.95856 0.92059 0.95213 0.92689 0.84844 0.87604 0.91812 0.74822 0.92386 0.92435 0.90422 0.90448 0.90210 0.90211 0.85171 0.84636 0.84591 0.84657 0.85193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.74 9.19 71.98 0.66 -5.08 16 2 C 0.22 11.15 2.60 44.17 0.11 11.27 16 3 H -0.02 -0.94 7.80 -2.39 -0.02 -0.96 16 4 C -0.54 -30.60 8.59 25.60 0.22 -30.38 16 5 H 0.05 3.01 7.62 -2.91 -0.02 2.99 16 6 C 0.02 0.88 5.30 84.66 0.45 1.33 16 7 N -0.91 -52.30 11.32 21.45 0.24 -52.06 16 8 Si 0.96 44.17 29.54 68.60 2.03 46.20 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.68 -30.92 5.93 -499.46 -2.96 -33.88 16 13 C 0.04 1.47 5.97 85.56 0.51 1.98 16 14 C 0.52 16.87 7.87 87.66 0.69 17.55 16 15 O -0.57 -23.84 16.20 -3.04 -0.05 -23.89 16 16 N -0.72 -16.02 5.56 -463.05 -2.57 -18.59 16 17 C 0.12 2.32 5.67 86.38 0.49 2.81 16 18 C -0.11 -1.41 5.31 30.60 0.16 -1.24 16 19 C -0.08 -0.93 5.35 29.85 0.16 -0.77 16 20 C -0.09 -1.24 5.13 -19.87 -0.10 -1.35 16 21 C -0.13 -1.76 9.70 22.27 0.22 -1.55 16 22 C -0.13 -1.62 10.05 22.27 0.22 -1.40 16 23 C -0.14 -1.66 10.05 22.27 0.22 -1.44 16 24 C -0.13 -1.63 10.05 22.27 0.22 -1.41 16 25 C -0.13 -1.77 9.70 22.27 0.22 -1.55 16 26 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 28 H 0.03 1.28 7.45 -2.38 -0.02 1.26 16 29 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 30 H 0.33 15.76 7.92 -89.70 -0.71 15.05 16 31 H 0.11 3.37 7.44 -2.39 -0.02 3.35 16 32 H 0.06 2.04 8.05 -2.39 -0.02 2.02 16 33 H 0.42 6.58 8.47 -92.70 -0.79 5.79 16 34 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 39 H 0.08 0.94 8.08 -2.38 -0.02 0.92 16 40 H 0.13 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.14 1.19 8.06 -2.91 -0.02 1.16 16 42 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 44 H 0.13 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -69.17 366.70 0.64 -68.53 By element: Atomic # 1 Polarization: 25.42 SS G_CDS: -0.51 Total: 24.91 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: 4.46 Total: -11.23 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -5.29 Total: -104.52 kcal Atomic # 8 Polarization: -23.84 SS G_CDS: -0.05 Total: -23.89 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -69.17 0.64 -68.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602861112.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.146 kcal (2) G-P(sol) polarization free energy of solvation -69.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds