Wall clock time and date at job start Tue Mar 31 2020 08:21:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47081 * 2 1 4 4 C 1.50698 * 109.47434 * 119.99837 * 2 1 3 5 5 C 1.38129 * 120.03746 * 305.01127 * 4 2 1 6 6 C 1.38259 * 120.07287 * 179.71940 * 5 4 2 7 7 C 1.38302 * 120.14268 * 0.25883 * 6 5 4 8 8 C 1.38094 * 120.06832 * 0.02562 * 7 6 5 9 9 C 1.38858 * 120.03738 * 125.26622 * 4 2 1 10 10 N 1.39927 * 120.06758 * 0.02562 * 9 4 2 11 11 C 1.34778 * 119.99449 * 205.14777 * 10 9 4 12 12 O 1.21285 * 120.00560 * 5.49964 * 11 10 9 13 13 C 1.50702 * 119.99414 * 185.50741 * 11 10 9 14 14 N 1.46909 * 109.46916 * 179.97438 * 13 11 10 15 15 C 1.46895 * 110.99771 * 179.97438 * 14 13 11 16 16 H 1.09002 * 109.47680 * 35.00196 * 15 14 13 17 17 C 1.52999 * 109.47230 * 275.00042 * 15 14 13 18 18 C 1.50706 * 109.46932 * 155.00223 * 15 14 13 19 19 H 1.07991 * 119.99987 * 359.97438 * 18 15 14 20 20 C 1.37879 * 119.99773 * 179.97438 * 18 15 14 21 21 N 1.31513 * 120.00360 * 359.97438 * 20 18 15 22 22 Si 1.86800 * 119.99707 * 179.97438 * 20 18 15 23 23 H 1.48498 * 109.47223 * 0.02562 * 22 20 18 24 24 H 1.48503 * 109.47184 * 119.99836 * 22 20 18 25 25 H 1.48497 * 109.47299 * 240.00136 * 22 20 18 26 26 H 1.09004 * 109.47184 * 299.99883 * 1 2 3 27 27 H 1.08998 * 109.47608 * 60.00303 * 1 2 3 28 28 H 1.09005 * 109.46912 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47184 * 240.00117 * 2 1 3 30 30 H 1.08997 * 109.47305 * 59.99814 * 3 2 1 31 31 H 1.08999 * 109.47038 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.46651 * 299.99951 * 3 2 1 33 33 H 1.08001 * 119.96287 * 0.02562 * 5 4 2 34 34 H 1.08007 * 119.92727 * 180.23529 * 6 5 4 35 35 H 1.08001 * 119.96230 * 179.97438 * 7 6 5 36 36 H 1.07993 * 120.03388 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00154 * 25.14772 * 10 9 4 38 38 H 1.09001 * 109.46982 * 299.99439 * 13 11 10 39 39 H 1.08999 * 109.47931 * 59.99904 * 13 11 10 40 40 H 1.00898 * 110.99771 * 303.95423 * 14 13 11 41 41 H 1.09001 * 109.47237 * 60.00581 * 17 15 14 42 42 H 1.09010 * 109.47316 * 180.02562 * 17 15 14 43 43 H 1.09001 * 109.47246 * 299.99920 * 17 15 14 44 44 H 0.96995 * 120.00326 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7103 1.2304 5 6 1.6160 -0.3024 2.4827 6 6 2.0719 -0.9573 3.6118 7 6 2.9501 -2.0190 3.4918 8 6 3.3747 -2.4280 2.2430 9 6 2.9184 -1.7723 1.1069 10 7 3.3466 -2.1842 -0.1600 11 6 3.7629 -3.4518 -0.3513 12 8 3.6731 -4.2618 0.5469 13 6 4.3402 -3.8625 -1.6814 14 7 4.7160 -5.2819 -1.6348 15 6 5.2832 -5.7187 -2.9175 16 1 5.8563 -4.9028 -3.3580 17 6 4.1512 -6.1172 -3.8665 18 6 6.1879 -6.9023 -2.6896 19 1 6.3277 -7.2908 -1.6918 20 6 6.8369 -7.4890 -3.7553 21 7 6.6662 -7.0162 -4.9705 22 14 7.9588 -8.9557 -3.4727 23 1 7.9800 -9.2913 -2.0264 24 1 7.4543 -10.1205 -4.2433 25 1 9.3335 -8.6215 -3.9240 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6765 1.9563 -0.8901 33 1 0.9297 0.5258 2.5798 34 1 1.7419 -0.6388 4.5897 35 1 3.3047 -2.5283 4.3758 36 1 4.0600 -3.2574 2.1499 37 1 3.3439 -1.5576 -0.9004 38 1 3.5965 -3.7087 -2.4633 39 1 5.2229 -3.2602 -1.8961 40 1 5.3562 -5.4617 -0.8759 41 1 3.4969 -5.2611 -4.0313 42 1 4.5722 -6.4417 -4.8182 43 1 3.5781 -6.9331 -3.4260 44 1 7.1231 -7.4287 -5.7201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602863601.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:21:14 Heat of formation + Delta-G solvation = -15.679191 kcal Electronic energy + Delta-G solvation = -22776.377299 eV Core-core repulsion = 19500.260100 eV Total energy + Delta-G solvation = -3276.117199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 290.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.71062 -38.74788 -35.74661 -35.55910 -34.57902 -32.56113 -30.24354 -29.75660 -28.70201 -27.38708 -25.75584 -24.87393 -23.84109 -22.35791 -20.26233 -20.14113 -19.80008 -18.02619 -17.08441 -16.37556 -15.82039 -15.54706 -15.07801 -14.73509 -14.47513 -14.15012 -13.91547 -13.85746 -13.59199 -13.48013 -13.21341 -12.67875 -12.51344 -12.32500 -12.23281 -11.98797 -11.78844 -11.39286 -11.29873 -10.96760 -10.93750 -10.89811 -10.75817 -10.40747 -10.39478 -10.17495 -10.08346 -9.45200 -8.87140 -8.76743 -8.51138 -8.00750 -7.36804 -6.06405 -4.12425 1.25636 1.38378 2.80068 3.07062 3.28164 3.36184 3.41739 3.79473 4.38915 4.43903 4.55972 4.83240 4.94697 4.99932 5.07495 5.14335 5.23105 5.30291 5.32351 5.37492 5.49528 5.57275 5.63520 5.66496 5.72933 5.76808 5.80496 5.95563 5.99580 6.04296 6.28563 6.42011 6.49941 6.57185 6.78745 7.05636 7.06311 7.13884 7.35339 7.47182 7.75758 7.82879 8.21690 8.28292 8.30434 8.59264 8.97413 9.53806 11.00153 Molecular weight = 290.17amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003075 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.994244 B = 9103.264451 C = 9837.106825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.055 4.055 3 C -0.143 4.143 4 C -0.115 4.115 5 C -0.096 4.096 6 C -0.145 4.145 7 C -0.103 4.103 8 C -0.131 4.131 9 C 0.162 3.838 10 N -0.679 5.679 11 C 0.512 3.488 12 O -0.500 6.500 13 C 0.044 3.956 14 N -0.672 5.672 15 C 0.212 3.788 16 H 0.003 0.997 17 C -0.126 4.126 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.062 3.938 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.285 1.285 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.146 0.854 37 H 0.408 0.592 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.341 0.659 41 H 0.003 0.997 42 H 0.082 0.918 43 H 0.033 0.967 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.760 17.952 10.772 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.074 4.074 3 C -0.201 4.201 4 C -0.117 4.117 5 C -0.115 4.115 6 C -0.164 4.164 7 C -0.122 4.122 8 C -0.151 4.151 9 C 0.066 3.934 10 N -0.325 5.325 11 C 0.300 3.700 12 O -0.373 6.373 13 C -0.089 4.089 14 N -0.305 5.305 15 C 0.105 3.895 16 H 0.021 0.979 17 C -0.184 4.184 18 C -0.556 4.556 19 H 0.081 0.919 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.211 1.211 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.245 0.755 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.160 0.840 41 H 0.022 0.978 42 H 0.101 0.899 43 H 0.053 0.947 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.334 17.027 10.995 22.751 hybrid contribution 1.400 -0.041 -0.311 1.434 sum -8.935 16.986 10.684 21.966 Atomic orbital electron populations 1.21836 0.94079 1.02210 1.01818 1.20019 0.96349 0.95827 0.95202 1.21867 1.01233 0.95009 1.01967 1.19545 0.98361 0.98305 0.95514 1.20695 0.99767 0.99695 0.91331 1.21046 0.99714 0.97302 0.98308 1.21052 0.97460 0.96562 0.97091 1.21463 1.01444 1.01409 0.90791 1.17683 0.95165 0.95354 0.85160 1.43820 1.65308 1.13211 1.10177 1.21340 0.76976 0.80437 0.91246 1.90647 1.52167 1.50384 1.44067 1.21827 1.00140 0.94049 0.92852 1.60523 1.49730 1.11547 1.08697 1.19172 0.91446 0.94779 0.84103 0.97948 1.21743 0.97002 0.97583 1.02099 1.21288 1.25767 1.14390 0.94200 0.91944 1.24912 0.96706 0.97331 0.95036 1.69897 1.43024 1.41258 0.98779 0.86436 0.80149 0.82383 0.78441 1.19653 1.20931 1.21080 0.92415 0.92357 0.92416 0.90904 0.92374 0.92537 0.92310 0.86127 0.86362 0.85984 0.83609 0.75487 0.88618 0.92881 0.84003 0.97781 0.89894 0.94745 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 8.95 37.15 0.33 -0.80 16 2 C -0.06 -0.48 2.98 -91.78 -0.27 -0.75 16 3 C -0.14 -1.03 9.05 37.16 0.34 -0.69 16 4 C -0.11 -1.25 4.80 -104.43 -0.50 -1.75 16 5 C -0.10 -0.96 8.75 -39.61 -0.35 -1.31 16 6 C -0.14 -1.48 10.04 -39.55 -0.40 -1.88 16 7 C -0.10 -1.22 10.04 -39.61 -0.40 -1.61 16 8 C -0.13 -1.86 8.72 -39.39 -0.34 -2.20 16 9 C 0.16 2.14 6.41 -83.69 -0.54 1.60 16 10 N -0.68 -8.69 5.05 -9.86 -0.05 -8.74 16 11 C 0.51 8.34 7.67 -10.98 -0.08 8.25 16 12 O -0.50 -9.83 13.37 5.55 0.07 -9.76 16 13 C 0.04 0.76 5.97 -4.97 -0.03 0.73 16 14 N -0.67 -14.66 5.93 -109.21 -0.65 -15.31 16 15 C 0.21 5.31 2.60 -68.87 -0.18 5.13 16 16 H 0.00 0.08 7.80 -51.93 -0.41 -0.33 16 17 C -0.13 -3.10 9.19 37.16 0.34 -2.75 16 18 C -0.52 -14.25 8.59 -34.44 -0.30 -14.55 16 19 H 0.06 1.72 7.62 -52.49 -0.40 1.32 16 20 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -25.14 11.32 55.43 0.63 -24.51 16 22 Si 0.90 21.31 29.54 -169.99 -5.02 16.28 16 23 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.06 0.41 7.13 -51.93 -0.37 0.04 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.62 5.99 -51.93 -0.31 0.31 16 30 H 0.06 0.39 7.70 -51.93 -0.40 -0.01 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.12 0.94 7.10 -52.49 -0.37 0.57 16 34 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 36 H 0.15 2.35 5.79 -52.49 -0.30 2.05 16 37 H 0.41 4.02 6.91 -40.82 -0.28 3.73 16 38 H 0.10 1.53 7.44 -51.93 -0.39 1.14 16 39 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 40 H 0.34 7.61 7.93 -39.29 -0.31 7.30 16 41 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 42 H 0.08 2.21 6.07 -51.92 -0.32 1.89 16 43 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -30.81 353.70 -8.91 -39.72 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.76 Total: 7.95 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -2.47 Total: -10.97 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.07 Total: -48.56 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.07 Total: -9.76 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.81 -8.91 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602863601.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.046 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds